import sys from os import environ import string sys.path.append(environ["PYTHON_MODULE_PATH"]) import CompuCellSetup CompuCellSetup.setSimulationXMLFileName("Simulation/ConnectivityTest.xml") sim,simthread = CompuCellSetup.getCoreSimulationObjects() CompuCellSetup.initializeSimulationObjects(sim,simthread) from PySteppables import SteppableRegistry steppableRegistry=SteppableRegistry() from ConnectivityElongationSteppable import ConnectivityElongationSteppable connectivityElongationSteppable=ConnectivityElongationSteppable(_simulator=sim,_frequency=50) steppableRegistry.registerSteppable(connectivityElongationSteppable) CompuCellSetup.mainLoop(sim,simthread,steppableRegistry)
import sys from os import environ import string sys.path.append(environ["PYTHON_MODULE_PATH"]) import CompuCellSetup CompuCellSetup.setSimulationXMLFileName("Simulation/elongationFlexTest.xml") sim, simthread = CompuCellSetup.getCoreSimulationObjects() CompuCellSetup.initializeSimulationObjects(sim, simthread) from PySteppables import SteppableRegistry steppableRegistry = SteppableRegistry() from elongationFlexSteppables import ElongationFlexSteppable elongationFlexSteppable = ElongationFlexSteppable(_simulator=sim, _frequency=50) steppableRegistry.registerSteppable(elongationFlexSteppable) CompuCellSetup.mainLoop(sim, simthread, steppableRegistry)
{"Name": "ExternalPotential"}) externalPotential.ElementCC3D("Lambda", {"x": -10, "y": 0, "z": 0}) pifInitializer = cc3d.ElementCC3D("Steppable", {"Type": "PIFInitializer"}) pifInitializer.ElementCC3D("PIFName", {}, "Simulation/elasticitytest.piff") CompuCellSetup.setSimulationXMLDescription(cc3d) import sys from os import environ import string sys.path.append(environ["PYTHON_MODULE_PATH"]) import CompuCellSetup sim, simthread = CompuCellSetup.getCoreSimulationObjects() configureSimulation(sim) CompuCellSetup.initializeSimulationObjects(sim, simthread) from PySteppables import SteppableRegistry steppableRegistry = SteppableRegistry() from elasticitytestSteppables import ElasticityLocalSteppable elasticitySteppable = ElasticityLocalSteppable(_simulator=sim, _frequency=50) steppableRegistry.registerSteppable(elasticitySteppable) CompuCellSetup.mainLoop(sim, simthread, steppableRegistry)
CompuCellSetup.setSimulationXMLDescription(cc3d) import sys from os import environ import string sys.path.append(environ["PYTHON_MODULE_PATH"]) import CompuCellSetup sim,simthread = CompuCellSetup.getCoreSimulationObjects() #Create extra player fields here or add attributes pyAttributeAdder,listAdder=CompuCellSetup.attachListToCells(sim) configureSimulation(sim) CompuCellSetup.initializeSimulationObjects(sim,simthread) from PySteppables import SteppableRegistry steppableRegistry=SteppableRegistry() from CellDiffusionCalculatorSteppable import * CellDiffusionCalculator=CellDiffusionCalculatorSteppable(_simulator=sim,_frequency=50) steppableRegistry.registerSteppable(CellDiffusionCalculator) CompuCellSetup.mainLoop(sim,simthread,steppableRegistry)
import sys from os import environ import string sys.path.append(environ["PYTHON_MODULE_PATH"]) import CompuCellSetup sim,simthread = CompuCellSetup.getCoreSimulationObjects() CompuCellSetup.initializeSimulationObjects(sim,simthread) import CompuCell #Create extra player fields here or add attributes from PySteppables import SteppableRegistry steppableRegistry=SteppableRegistry() from VascularTumorSteppables import MitosisSteppable mitosisSteppable=MitosisSteppable(sim,1) steppableRegistry.registerSteppable(mitosisSteppable) from VascularTumorSteppables import VolumeParamSteppable #sim,frequency,areaThresh,nutrientThresh,necroticThresh volumeParamSteppable=VolumeParamSteppable(sim,1) steppableRegistry.registerSteppable(volumeParamSteppable) CompuCellSetup.mainLoop(sim,simthread,steppableRegistry)
import sys from os import environ import string sys.path.append(environ["PYTHON_MODULE_PATH"]) import CompuCellSetup CompuCellSetup.setSimulationXMLFileName("Simulation/elongationFlexTest.xml") sim,simthread = CompuCellSetup.getCoreSimulationObjects() CompuCellSetup.initializeSimulationObjects(sim,simthread) from PySteppables import SteppableRegistry steppableRegistry=SteppableRegistry() from elongationFlexSteppables import ElongationFlexSteppable elongationFlexSteppable=ElongationFlexSteppable(_simulator=sim,_frequency=50) steppableRegistry.registerSteppable(elongationFlexSteppable) CompuCellSetup.mainLoop(sim,simthread,steppableRegistry)
externalPotential.ElementCC3D("Lambda",{"x":-10,"y":0, "z":0}) pifInitializer=cc3d.ElementCC3D("Steppable",{"Type":"PIFInitializer"}) pifInitializer.ElementCC3D("PIFName",{},"Simulation/elasticitytest.piff") CompuCellSetup.setSimulationXMLDescription(cc3d) import sys from os import environ import string sys.path.append(environ["PYTHON_MODULE_PATH"]) import CompuCellSetup sim,simthread = CompuCellSetup.getCoreSimulationObjects() configureSimulation(sim) CompuCellSetup.initializeSimulationObjects(sim,simthread) from PySteppables import SteppableRegistry steppableRegistry=SteppableRegistry() from elasticitytestSteppables import ElasticityLocalSteppable elasticitySteppable=ElasticityLocalSteppable(_simulator=sim,_frequency=50) steppableRegistry.registerSteppable(elasticitySteppable) CompuCellSetup.mainLoop(sim,simthread,steppableRegistry)
import sys from os import environ import string sys.path.append(environ["PYTHON_MODULE_PATH"]) import CompuCellSetup sim, simthread = CompuCellSetup.getCoreSimulationObjects() CompuCellSetup.initializeSimulationObjects(sim, simthread) import CompuCell #Create extra player fields here or add attributes from PySteppables import SteppableRegistry steppableRegistry = SteppableRegistry() from VascularTumorSteppables import MitosisSteppable mitosisSteppable = MitosisSteppable(sim, 1) steppableRegistry.registerSteppable(mitosisSteppable) from VascularTumorSteppables import VolumeParamSteppable #sim,frequency,areaThresh,nutrientThresh,necroticThresh volumeParamSteppable = VolumeParamSteppable(sim, 1) steppableRegistry.registerSteppable(volumeParamSteppable) CompuCellSetup.mainLoop(sim, simthread, steppableRegistry)