class CreateDiscreteWidget(CreateTaskBase): """ Descript. : """ def __init__(self, parent=None, name=None, fl=0): """ Descript. : """ CreateTaskBase.__init__(self, parent, name, Qt.WindowFlags(fl), "Standart") if not name: self.setObjectName("create_discrete_widget") # Hardware objects ---------------------------------------------------- # Internal variables -------------------------------------------------- self.init_models() # Graphic elements ---------------------------------------------------- self._acq_widget = AcquisitionWidget( self, "acquisition_widget", layout='vertical', acq_params=self._acquisition_parameters, path_template=self._path_template) self._data_path_widget = DataPathWidget(self, 'create_dc_path_widget', data_model=self._path_template, layout='vertical') self._processing_widget = ProcessingWidget( self, data_model=self._processing_parameters) # Layout -------------------------------------------------------------- _main_vlayout = QVBoxLayout(self) _main_vlayout.addWidget(self._acq_widget) _main_vlayout.addWidget(self._data_path_widget) _main_vlayout.addWidget(self._processing_widget) _main_vlayout.addStretch(0) _main_vlayout.setSpacing(2) _main_vlayout.setContentsMargins(0, 0, 0, 0) # SizePolicies -------------------------------------------------------- # Qt signal/slot connections ------------------------------------------ self._acq_widget.acqParametersChangedSignal.\ connect(self.acq_parameters_changed) self._data_path_widget.pathTemplateChangedSignal.\ connect(self.path_template_changed) self._acq_widget.madEnergySelectedSignal.connect(\ self.mad_energy_selected) self._processing_widget.enableProcessingSignal.connect(\ self._run_processing_toggled) self._acq_widget.acq_widget_layout.set_max_osc_range_button.clicked.\ connect(self.set_max_osc_total_range_clicked) # Other --------------------------------------------------------------- #self._processing_widget.processing_widget.\ # run_processing_parallel_cbox.hide() def init_models(self): """ Descript. : """ CreateTaskBase.init_models(self) self._energy_scan_result = queue_model_objects.EnergyScanResult() self._processing_parameters = queue_model_objects.ProcessingParameters( ) if self._beamline_setup_hwobj is not None: has_shutter_less = self._beamline_setup_hwobj.\ detector_has_shutterless() self._acquisition_parameters.shutterless = has_shutter_less self._acquisition_parameters = self._beamline_setup_hwobj.\ get_default_acquisition_parameters("default_acquisition_values") def set_tunable_energy(self, state): """ Descript. : """ self._acq_widget.set_tunable_energy(state) def update_processing_parameters(self, crystal): """ Descript. : """ self._processing_parameters.space_group = crystal.space_group self._processing_parameters.cell_a = crystal.cell_a self._processing_parameters.cell_alpha = crystal.cell_alpha self._processing_parameters.cell_b = crystal.cell_b self._processing_parameters.cell_beta = crystal.cell_beta self._processing_parameters.cell_c = crystal.cell_c self._processing_parameters.cell_gamma = crystal.cell_gamma self._processing_widget.update_data_model(self._processing_parameters) def single_item_selection(self, tree_item): """ Descript. : """ CreateTaskBase.single_item_selection(self, tree_item) if isinstance(tree_item, Qt4_queue_item.SampleQueueItem): sample_model = tree_item.get_model() #self._processing_parameters = copy.deepcopy(self._processing_parameters) self._processing_parameters = sample_model.processing_parameters self._processing_widget.update_data_model( self._processing_parameters) elif isinstance(tree_item, Qt4_queue_item.BasketQueueItem): self.setDisabled(False) elif isinstance(tree_item, Qt4_queue_item.DataCollectionQueueItem): dc = tree_item.get_model() self._acq_widget.use_kappa(False) if not dc.is_helical(): if dc.is_executed(): self.setDisabled(True) else: self.setDisabled(False) sample_data_model = self.get_sample_item(tree_item).get_model() energy_scan_result = sample_data_model.crystals[ 0].energy_scan_result self._acq_widget.set_energies(energy_scan_result) #self._acq_widget.disable_inverse_beam(True) self._path_template = dc.get_path_template() self._data_path_widget.update_data_model(self._path_template) self._acquisition_parameters = dc.acquisitions[ 0].acquisition_parameters self._acq_widget.update_data_model( self._acquisition_parameters, self._path_template) #self.get_acquisition_widget().use_osc_start(True) if len(dc.acquisitions) == 1: self.select_shape_with_cpos(self._acquisition_parameters.\ centred_position) self._processing_parameters = dc.processing_parameters self._processing_widget.update_data_model( self._processing_parameters) else: self.setDisabled(True) else: self.setDisabled(True) def approve_creation(self): """ Descript. : """ result = CreateTaskBase.approve_creation(self) try: #This is very EMBL specific and soon will be removed if self._beamline_setup_hwobj.detector_hwobj.get_roi_mode_name( ) == "16M": file_size = 18. total_num_of_images = 14400 else: file_size = 18. / 4 total_num_of_images = 14400 * 4 num_images = float( self._acq_widget.acq_widget_layout.num_images_ledit.text()) total, free, perc = self._beamline_setup_hwobj.machine_info_hwobj.get_ramdisk_size( ) free_mb = free / (2**20) if num_images > total_num_of_images * free_mb / (125.8 * 1024): msg = "Ramdisk size (%d GB) is not enough to run the collection with " % ( free_mb / 1024) msg += "%d frames." % num_images logging.getLogger("GUI").error(msg) result = False except: pass return result # Called by the owning widget (task_toolbox_widget) to create # a collection. When a data collection group is selected. def _create_task(self, sample, shape): """ Descript. : """ tasks = [] if isinstance(shape, GraphicsItemPoint): snapshot = self._graphics_manager_hwobj.get_scene_snapshot(shape) cpos = copy.deepcopy(shape.get_centred_position()) cpos.snapshot_image = snapshot else: cpos = queue_model_objects.CentredPosition() cpos.snapshot_image = self._graphics_manager_hwobj.get_scene_snapshot( ) tasks.extend(self.create_dc(sample, cpos=cpos)) self._path_template.run_number += 1 return tasks def create_dc(self, sample, run_number=None, start_image=None, num_images=None, osc_start=None, sc=None, cpos=None, inverse_beam=False): """ Descript. : """ tasks = [] # Acquisition for start position acq = self._create_acq(sample) if run_number: acq.path_template.run_number = run_number if start_image: acq.acquisition_parameters.first_image = start_image acq.path_template.start_num = start_image if num_images: acq.acquisition_parameters.num_images = num_images acq.path_template.num_files = num_images if osc_start: acq.acquisition_parameters.osc_start = osc_start if inverse_beam: acq.acquisition_parameters.inverse_beam = False acq.acquisition_parameters.centred_position = cpos processing_parameters = copy.deepcopy(self._processing_parameters) dc = queue_model_objects.DataCollection([acq], sample.crystals[0], processing_parameters) dc.set_name(acq.path_template.get_prefix()) dc.set_number(acq.path_template.run_number) dc.experiment_type = queue_model_enumerables.EXPERIMENT_TYPE.NATIVE dc.run_processing_after = self._processing_widget.processing_widget.\ run_processing_after_cbox.isChecked() dc.run_processing_parallel = self._processing_widget.processing_widget.\ run_processing_parallel_cbox.isChecked() and \ acq.acquisition_parameters.num_images > 19 tasks.append(dc) return tasks def execute_task(self, sample): #All this should be in queue_entry level group_data = { 'sessionId': self._session_hwobj.session_id, 'experimentType': 'OSC' } gid = self._beamline_setup_hwobj.lims_client_hwobj.\ _store_data_collection_group(group_data) sample.lims_group_id = gid task_list = self._create_task(sample, None) task_list[0].lims_group_id = gid param_list = queue_model_objects.to_collect_dict(task_list[0], \ self._session_hwobj, sample, None) self._beamline_setup_hwobj.collect_hwobj.collect(\ queue_model_enumerables.COLLECTION_ORIGIN_STR.MXCUBE, param_list) def set_max_osc_total_range_clicked(self): num_images = int( self._acq_widget.acq_widget_layout.num_images_ledit.text()) (lower, upper), exp_time = self._acq_widget.update_osc_total_range_limits() self._acq_widget.acq_widget_layout.osc_start_ledit.setText(\ "%.2f" % lower) self._acq_widget.acq_widget_layout.osc_total_range_ledit.setText(\ "%.2f" % abs(upper - lower)) self._acq_widget.acq_widget_layout.num_images_ledit.setText(\ "%d" % (abs(upper - lower) / float(self._acq_widget.acq_widget_layout.osc_range_ledit.text())))
class CreateHelicalWidget(CreateTaskBase): def __init__(self, parent = None,name = None, fl = 0): CreateTaskBase.__init__(self, parent, name, fl, 'Helical') if not name: self.setObjectName("create_helical_widget") self.init_models() # Hardware objects ---------------------------------------------------- # Internal variables -------------------------------------------------- self._lines_map = {} # Graphic elements ---------------------------------------------------- self._lines_widget = loadUi(os.path.join(\ os.path.dirname(__file__), "ui_files/Qt4_helical_line_widget_layout.ui")) self._acq_widget = AcquisitionWidget(self, "acquisition_widget", layout='vertical', acq_params=self._acquisition_parameters, path_template=self._path_template) self._data_path_widget = DataPathWidget(self, 'create_dc_path_widget', data_model=self._path_template, layout='vertical') self._processing_widget = ProcessingWidget(self, data_model=self._processing_parameters) # Layout -------------------------------------------------------------- _main_vlayout = QVBoxLayout(self) _main_vlayout.addWidget(self._lines_widget) _main_vlayout.addWidget(self._acq_widget) _main_vlayout.addWidget(self._data_path_widget) _main_vlayout.addWidget(self._processing_widget) _main_vlayout.addStretch(0) _main_vlayout.setSpacing(6) _main_vlayout.setContentsMargins(2, 2, 2, 2) # SizePolicies -------------------------------------------------------- # Qt signal/slot connections ------------------------------------------ self._lines_widget.lines_treewidget.itemSelectionChanged.connect(\ self.lines_treewidget_selection_changed) self._lines_widget.create_line_button.clicked.connect(\ self.create_line_button_clicked) self._lines_widget.create_auto_line_button.clicked.connect(\ self.create_auto_line_button_clicked) self._lines_widget.remove_line_button.clicked.connect(\ self.remove_line_button_clicked) self._lines_widget.overlay_cbox.stateChanged.connect(\ self.overlay_toggled) self._lines_widget.overlay_slider.valueChanged.connect(\ self.overlay_alpha_changed) self._lines_widget.swap_points_button.clicked.connect(\ self.swap_points_clicked) self._acq_widget.acqParametersChangedSignal.\ connect(self.acq_parameters_changed) self._acq_widget.madEnergySelectedSignal.connect(\ self.mad_energy_selected) self._acq_widget.acq_widget_layout.set_max_osc_range_button.clicked.\ connect(self.set_max_osc_total_range_clicked) self._data_path_widget.pathTemplateChangedSignal.\ connect(self.path_template_changed) self._processing_widget.enableProcessingSignal.connect(\ self._run_processing_toggled) # Other --------------------------------------------------------------- for col in range(self._lines_widget.lines_treewidget.columnCount()): self._lines_widget.lines_treewidget.resizeColumnToContents(col) #self._processing_widget.processing_widget.\ # run_processing_parallel_cbox.setChecked(False) self.enable_widgets(False) def enable_widgets(self, state): self._acq_widget.setEnabled(state) self._data_path_widget.setEnabled(state) self._processing_widget.setEnabled(state) def init_models(self): CreateTaskBase.init_models(self) self._energy_scan_result = queue_model_objects.EnergyScanResult() self._processing_parameters = queue_model_objects.ProcessingParameters() if self._beamline_setup_hwobj is not None: has_shutter_less = self._beamline_setup_hwobj.\ detector_has_shutterless() self._acquisition_parameters.shutterless = has_shutter_less self._acquisition_parameters = self._beamline_setup_hwobj.\ get_default_acquisition_parameters("default_helical_values") def set_beamline_setup(self, bl_setup_hwobj): CreateTaskBase.set_beamline_setup(self, bl_setup_hwobj) # At startup, if scene loaded from file, then update listwidget shapes = self._graphics_manager_hwobj.get_shapes() for shape in shapes: if isinstance(shape, GraphicsItemLine): self.shape_created(shape, "Line") def shape_created(self, shape, shape_type): if shape_type == "Line": self._lines_widget.lines_treewidget.clearSelection() #info_str_list = QStringList() info_str_list = [] info_str_list.append(shape.get_display_name()) info_str_list.append("%d" % shape.get_points_index()[0]) info_str_list.append("%d" % shape.get_points_index()[1]) lines_treewidget_item = QTreeWidgetItem(\ self._lines_widget.lines_treewidget, info_str_list) lines_treewidget_item.setSelected(True) self._lines_map[shape] = lines_treewidget_item self.lines_treewidget_selection_changed() def shape_deleted(self, shape, shape_type): if shape_type == "Line" and self._lines_map.get(shape): shape_index = self._lines_widget.lines_treewidget.\ indexFromItem(self._lines_map[shape]) self._lines_widget.lines_treewidget.\ takeTopLevelItem(shape_index.row()) self._lines_map.pop(shape) def shape_changed(self, shape, shape_type): lines_treewidget_item = self._lines_map.get(shape) if lines_treewidget_item: lines_treewidget_item.setText(1, "%d" % shape.get_points_index()[0]) lines_treewidget_item.setText(2, "%d" % shape.get_points_index()[1]) def approve_creation(self): base_result = CreateTaskBase.approve_creation(self) if len(self._lines_widget.lines_treewidget.selectedItems()) == 0: logging.getLogger("GUI").\ warning("No lines selected, please select one or more lines.") return False else: return base_result def update_processing_parameters(self, crystal): self._processing_parameters.space_group = crystal.space_group self._processing_parameters.cell_a = crystal.cell_a self._processing_parameters.cell_alpha = crystal.cell_alpha self._processing_parameters.cell_b = crystal.cell_b self._processing_parameters.cell_beta = crystal.cell_beta self._processing_parameters.cell_c = crystal.cell_c self._processing_parameters.cell_gamma = crystal.cell_gamma self._processing_widget.update_data_model(self._processing_parameters) def select_shape_with_cpos(self, start_cpos, end_cpos, num_images): selected_line = None self._lines_widget.overlay_slider.setEnabled(False) self._lines_widget.overlay_cbox.setEnabled(False) self._graphics_manager_hwobj.de_select_all() for shape in self._graphics_manager_hwobj.get_shapes(): if isinstance(shape, GraphicsItemLine): (start_cpos_index, end_cpos_index) = shape.get_points_index() if start_cpos_index == start_cpos.index and \ end_cpos_index == end_cpos.index: self._graphics_manager_hwobj.select_shape(shape) shape.set_num_images(num_images) selected_line = shape self._lines_widget.overlay_slider.setEnabled(True) self._lines_widget.overlay_cbox.setEnabled(True) #de-select previous selected list items and #select the current shape (Line). """ for (list_item, shape) in self._lines_map.iteritems(): if selected_line == shape: list_item.setSelected(True) else: list_item.setSelected(False) """ def single_item_selection(self, tree_item): CreateTaskBase.single_item_selection(self, tree_item) if isinstance(tree_item, Qt4_queue_item.SampleQueueItem): sample_model = tree_item.get_model() self._processing_parameters = sample_model.processing_parameters #self._processing_parameters = copy.deepcopy(self._processing_parameters) self._processing_widget.update_data_model(self._processing_parameters) elif isinstance(tree_item, Qt4_queue_item.BasketQueueItem): self.setDisabled(False) elif isinstance(tree_item, Qt4_queue_item.DataCollectionQueueItem): data_collection = tree_item.get_model() if data_collection.is_helical(): self.setDisabled(tree_item.get_model().is_executed()) self._path_template = data_collection.get_path_template() self._data_path_widget.update_data_model(self._path_template) self._acquisition_parameters = data_collection.acquisitions[0].\ acquisition_parameters if len(data_collection.acquisitions) == 2: start_cpos = data_collection.acquisitions[0].acquisition_parameters.\ centred_position end_cpos = data_collection.acquisitions[1].acquisition_parameters.\ centred_position num_images = data_collection.acquisitions[0].acquisition_parameters.\ num_images self.select_shape_with_cpos(start_cpos, end_cpos, num_images) self._acq_widget.update_data_model(self._acquisition_parameters, self._path_template) #self.get_acquisition_widget().use_osc_start(True) self._processing_parameters = data_collection.processing_parameters self._processing_widget.update_data_model(self._processing_parameters) else: self.setDisabled(True) else: self.setDisabled(True) if isinstance(tree_item, Qt4_queue_item.SampleQueueItem) or \ isinstance(tree_item, Qt4_queue_item.DataCollectionGroupQueueItem) or \ isinstance(tree_item, Qt4_queue_item.DataCollectionQueueItem): self._processing_widget.update_data_model(self._processing_parameters) self._acq_widget.update_data_model(self._acquisition_parameters, self._path_template) def _create_task(self, sample, shape): data_collections = [] for shape in self.get_selected_shapes(): snapshot = self._graphics_manager_hwobj.get_scene_snapshot(shape) # Acquisition for start position start_acq = self._create_acq(sample) start_graphical_point, end_graphical_point = \ shape.get_graphical_points() start_acq.acquisition_parameters.\ centred_position = copy.deepcopy(start_graphical_point.get_centred_position()) start_acq.acquisition_parameters.centred_position.\ snapshot_image = snapshot start_acq.path_template.suffix = self._session_hwobj.suffix # Add another acquisition for the end position end_acq = self._create_acq(sample) end_acq.acquisition_parameters.\ centred_position = copy.deepcopy(end_graphical_point.get_centred_position()) end_acq.acquisition_parameters.centred_position.\ snapshot_image = snapshot end_acq.path_template.suffix = self._session_hwobj.suffix processing_parameters = copy.deepcopy(self._processing_parameters) dc = queue_model_objects.DataCollection([start_acq, end_acq], sample.crystals[0], processing_parameters) dc.set_name(start_acq.path_template.get_prefix()) dc.set_number(start_acq.path_template.run_number) dc.set_experiment_type(EXPERIMENT_TYPE.HELICAL) dc.set_requires_centring(False) dc.run_processing_after = self._processing_widget.processing_widget.\ run_processing_after_cbox.isChecked() dc.run_processing_parallel = self._processing_widget.processing_widget.\ run_processing_parallel_cbox.isChecked() data_collections.append(dc) self._path_template.run_number += 1 return data_collections def set_max_osc_total_range_clicked(self): num_images = int(self._acq_widget.acq_widget_layout.num_images_ledit.text()) (lower, upper), exp_time = self._acq_widget.update_osc_total_range_limits() self._acq_widget.acq_widget_layout.osc_start_ledit.setText(\ "%.2f" % lower) self._acq_widget.acq_widget_layout.osc_total_range_ledit.setText(\ "%.2f" % abs(upper - lower)) self._acq_widget.acq_widget_layout.osc_range.setText(\ "%.2f" % (abs(lower - upper) / 2 / num_images)) def lines_treewidget_selection_changed(self): self.enable_widgets(\ len(self._lines_widget.lines_treewidget.selectedItems()) > 0) self._lines_widget.remove_line_button.setEnabled(\ len(self._lines_widget.lines_treewidget.selectedItems()) > 0) self._lines_widget.swap_points_button.setEnabled(\ len(self._lines_widget.lines_treewidget.selectedItems()) > 0) for shape, list_item in self._lines_map.iteritems(): self._graphics_manager_hwobj.select_shape(shape, list_item.isSelected()) self._acq_widget.emit_acq_parameters_changed() def create_line_button_clicked(self): self._graphics_manager_hwobj.create_line() def create_auto_line_button_clicked(self): self._graphics_manager_hwobj.create_auto_line() def remove_line_button_clicked(self): line_to_delete = None for line, treewidget_item in self._lines_map.iteritems(): if treewidget_item.isSelected(): line_to_delete = line break if line_to_delete: self._graphics_manager_hwobj.delete_shape(line_to_delete) self.lines_treewidget_selection_changed() def get_selected_shapes(self): selected_lines = [] for line, treewidget_item in self._lines_map.iteritems(): if treewidget_item.isSelected(): selected_lines.append(line) return selected_lines def overlay_toggled(self, state): self._graphics_manager_hwobj.set_display_overlay(state) def overlay_alpha_changed(self, alpha_value): for line, treewidget_item in self._lines_map.iteritems(): if treewidget_item.isSelected(): line.set_fill_alpha(alpha_value) def swap_points_clicked(self): for line, treewidget_item in self._lines_map.iteritems(): if treewidget_item.isSelected(): self._graphics_manager_hwobj.swap_line_points(line)
class CreateDiscreteWidget(CreateTaskBase): """ Descript. : """ def __init__(self, parent=None, name=None, fl=0): """ Descript. : """ CreateTaskBase.__init__(self, parent, name, Qt.WindowFlags(fl), "Standard") if not name: self.setObjectName("create_discrete_widget") # Hardware objects ---------------------------------------------------- # Internal variables -------------------------------------------------- self.init_models() # Graphic elements ---------------------------------------------------- self._acq_widget = AcquisitionWidget(self, "acquisition_widget", layout='vertical', acq_params=self._acquisition_parameters, path_template=self._path_template) self._data_path_widget = DataPathWidget(self, 'create_dc_path_widget', data_model=self._path_template, layout='vertical') self._processing_widget = ProcessingWidget(self, data_model=self._processing_parameters) # Layout -------------------------------------------------------------- _main_vlayout = QVBoxLayout(self) _main_vlayout.addWidget(self._acq_widget) _main_vlayout.addWidget(self._data_path_widget) _main_vlayout.addWidget(self._processing_widget) _main_vlayout.addStretch(0) _main_vlayout.setSpacing(6) _main_vlayout.setContentsMargins(2, 2, 2, 2) # SizePolicies -------------------------------------------------------- # Qt signal/slot connections ------------------------------------------ self._acq_widget.acqParametersChangedSignal.\ connect(self.acq_parameters_changed) self._data_path_widget.pathTemplateChangedSignal.\ connect(self.path_template_changed) self._acq_widget.madEnergySelectedSignal.connect(\ self.mad_energy_selected) self._processing_widget.enableProcessingSignal.connect(\ self._run_processing_toggled) # Other --------------------------------------------------------------- def init_models(self): """ Descript. : """ CreateTaskBase.init_models(self) #self._energy_scan_result = queue_model_objects.EnergyScanResult() self._processing_parameters = queue_model_objects.ProcessingParameters() if self._beamline_setup_hwobj is not None: has_shutter_less = self._beamline_setup_hwobj.\ detector_has_shutterless() self._acquisition_parameters.shutterless = has_shutter_less self._acquisition_parameters = self._beamline_setup_hwobj.\ get_default_acquisition_parameters("default_acquisition_values") self._processing_widget.processing_widget.run_processing_parallel_cbox.setChecked(\ self._beamline_setup_hwobj._get_run_processing_parallel()) def set_tunable_energy(self, state): """ Descript. : """ self._acq_widget.set_tunable_energy(state) def update_processing_parameters(self, crystal): """ Descript. : """ self._processing_parameters.space_group = crystal.space_group self._processing_parameters.cell_a = crystal.cell_a self._processing_parameters.cell_alpha = crystal.cell_alpha self._processing_parameters.cell_b = crystal.cell_b self._processing_parameters.cell_beta = crystal.cell_beta self._processing_parameters.cell_c = crystal.cell_c self._processing_parameters.cell_gamma = crystal.cell_gamma self._processing_widget.update_data_model(self._processing_parameters) def single_item_selection(self, tree_item): """ Descript. : """ CreateTaskBase.single_item_selection(self, tree_item) if isinstance(tree_item, Qt4_queue_item.SampleQueueItem): sample_model = tree_item.get_model() #self._processing_parameters = copy.deepcopy(self._processing_parameters) self._processing_parameters = sample_model.processing_parameters self._processing_widget.update_data_model(self._processing_parameters) elif isinstance(tree_item, Qt4_queue_item.BasketQueueItem): self.setDisabled(False) elif isinstance(tree_item, Qt4_queue_item.DataCollectionQueueItem): dc = tree_item.get_model() self._acq_widget.use_kappa(False) if not dc.is_helical(): if dc.is_executed(): self.setDisabled(True) else: self.setDisabled(False) sample_data_model = self.get_sample_item(tree_item).get_model() energy_scan_result = sample_data_model.crystals[0].energy_scan_result self._acq_widget.set_energies(energy_scan_result) #self._acq_widget.disable_inverse_beam(True) self._path_template = dc.get_path_template() self._data_path_widget.update_data_model(self._path_template) self._acquisition_parameters = dc.acquisitions[0].acquisition_parameters self._acq_widget.update_data_model(self._acquisition_parameters, self._path_template) #self.get_acquisition_widget().use_osc_start(True) if len(dc.acquisitions) == 1: self.select_shape_with_cpos(self._acquisition_parameters.\ centred_position) self._processing_parameters = dc.processing_parameters self._processing_widget.update_data_model(self._processing_parameters) else: self.setDisabled(True) else: self.setDisabled(True) def approve_creation(self): """ Descript. : """ result = CreateTaskBase.approve_creation(self) try: #This is very EMBL specific and soon will be removed if self._beamline_setup_hwobj.detector_hwobj.get_roi_mode_name() == "16M": file_size = 18. total_num_of_images = 14400 else: file_size = 18. / 4 total_num_of_images = 14400 * 4 num_images = float(self._acq_widget.acq_widget_layout.num_images_ledit.text()) total, free, perc = self._beamline_setup_hwobj.machine_info_hwobj.get_ramdisk_size() free_mb = free / (2 ** 20) if num_images > total_num_of_images * free_mb / (125.8 * 1024): msg = "Ramdisk size (%d GB) is not enough to run the collection with " % (free_mb / 1024) msg += "%d frames." % num_images logging.getLogger("GUI").error(msg) result = False except: pass return result # Called by the owning widget (task_toolbox_widget) to create # a collection. When a data collection group is selected. def _create_task(self, sample, shape): """ Descript. : """ tasks = [] if isinstance(shape, GraphicsItemPoint): snapshot = self._graphics_manager_hwobj.get_scene_snapshot(shape) cpos = copy.deepcopy(shape.get_centred_position()) cpos.snapshot_image = snapshot else: cpos = queue_model_objects.CentredPosition() cpos.snapshot_image = self._graphics_manager_hwobj.get_scene_snapshot() tasks.extend(self.create_dc(sample, cpos=cpos)) self._path_template.run_number += 1 return tasks def create_dc(self, sample, run_number = None, start_image = None, num_images = None, osc_start = None, sc = None, cpos=None, inverse_beam = False): """ Descript. : """ tasks = [] # Acquisition for start position acq = self._create_acq(sample) if run_number: acq.path_template.run_number = run_number if start_image: acq.acquisition_parameters.first_image = start_image acq.path_template.start_num = start_image if num_images: acq.acquisition_parameters.num_images = num_images acq.path_template.num_files = num_images if osc_start: acq.acquisition_parameters.osc_start = osc_start if inverse_beam: acq.acquisition_parameters.inverse_beam = False acq.acquisition_parameters.centred_position = cpos processing_parameters = copy.deepcopy(self._processing_parameters) dc = queue_model_objects.DataCollection([acq], sample.crystals[0], processing_parameters) dc.set_name(acq.path_template.get_prefix()) dc.set_number(acq.path_template.run_number) dc.experiment_type = queue_model_enumerables.EXPERIMENT_TYPE.NATIVE dc.run_processing_after = self._processing_widget.processing_widget.\ run_processing_after_cbox.isChecked() if self._processing_widget.processing_widget.\ run_processing_parallel_cbox.isChecked(): dc.run_processing_parallel = "Undefined" tasks.append(dc) return tasks def execute_task(self, sample): #All this should be in queue_entry level group_data = {'sessionId': self._session_hwobj.session_id, 'experimentType': 'OSC'} gid = self._beamline_setup_hwobj.lims_client_hwobj.\ _store_data_collection_group(group_data) sample.lims_group_id = gid task_list = self._create_task(sample, None) task_list[0].lims_group_id = gid param_list = queue_model_objects.to_collect_dict(task_list[0], \ self._session_hwobj, sample, None) self._beamline_setup_hwobj.collect_hwobj.collect(\ queue_model_enumerables.COLLECTION_ORIGIN_STR.MXCUBE, param_list) def set_max_osc_total_range_clicked(self): num_images = int(self._acq_widget.acq_widget_layout.num_images_ledit.text()) (lower, upper), exp_time = self._acq_widget.update_osc_total_range_limits() self._acq_widget.acq_widget_layout.osc_start_ledit.setText(\ "%.3f" % (lower + 0.001)) self._acq_widget.acq_widget_layout.osc_total_range_ledit.setText(\ "%.3f" % abs(upper - lower)) self._acq_widget.acq_widget_layout.num_images_ledit.setText(\ "%d" % (abs(upper - lower) / float(self._acq_widget.acq_widget_layout.osc_range_ledit.text())))
class CreateHelicalWidget(CreateTaskBase): def __init__(self, parent=None, name=None, fl=0): CreateTaskBase.__init__(self, parent, name, fl, 'Helical') if not name: self.setObjectName("create_helical_widget") self.init_models() # Hardware objects ---------------------------------------------------- # Internal variables -------------------------------------------------- self._lines_map = {} # Graphic elements ---------------------------------------------------- self._lines_widget = loadUi(os.path.join(\ os.path.dirname(__file__), "ui_files/Qt4_helical_line_widget_layout.ui")) self._acq_widget = AcquisitionWidget( self, "acquisition_widget", layout='vertical', acq_params=self._acquisition_parameters, path_template=self._path_template) self._data_path_widget = DataPathWidget(self, 'create_dc_path_widget', data_model=self._path_template, layout='vertical') self._processing_widget = ProcessingWidget( self, data_model=self._processing_parameters) # Layout -------------------------------------------------------------- _main_vlayout = QVBoxLayout(self) _main_vlayout.addWidget(self._lines_widget) _main_vlayout.addWidget(self._acq_widget) _main_vlayout.addWidget(self._data_path_widget) _main_vlayout.addWidget(self._processing_widget) _main_vlayout.addStretch(0) _main_vlayout.setSpacing(6) _main_vlayout.setContentsMargins(2, 2, 2, 2) # SizePolicies -------------------------------------------------------- # Qt signal/slot connections ------------------------------------------ self._lines_widget.lines_treewidget.itemSelectionChanged.connect(\ self.lines_treewidget_selection_changed) self._lines_widget.create_line_button.clicked.connect(\ self.create_line_button_clicked) self._lines_widget.create_auto_line_button.clicked.connect(\ self.create_auto_line_button_clicked) self._lines_widget.remove_line_button.clicked.connect(\ self.remove_line_button_clicked) self._lines_widget.overlay_cbox.stateChanged.connect(\ self.overlay_toggled) self._lines_widget.overlay_slider.valueChanged.connect(\ self.overlay_alpha_changed) self._lines_widget.swap_points_button.clicked.connect(\ self.swap_points_clicked) self._acq_widget.acqParametersChangedSignal.\ connect(self.acq_parameters_changed) self._acq_widget.madEnergySelectedSignal.connect(\ self.mad_energy_selected) self._acq_widget.acq_widget_layout.set_max_osc_range_button.clicked.\ connect(self.set_max_osc_total_range_clicked) self._data_path_widget.pathTemplateChangedSignal.\ connect(self.path_template_changed) self._processing_widget.enableProcessingSignal.connect(\ self._run_processing_toggled) # Other --------------------------------------------------------------- for col in range(self._lines_widget.lines_treewidget.columnCount()): self._lines_widget.lines_treewidget.resizeColumnToContents(col) #self._processing_widget.processing_widget.\ # run_processing_parallel_cbox.setChecked(False) self.enable_widgets(False) def enable_widgets(self, state): self._acq_widget.setEnabled(state) self._data_path_widget.setEnabled(state) self._processing_widget.setEnabled(state) def init_models(self): CreateTaskBase.init_models(self) self._energy_scan_result = queue_model_objects.EnergyScanResult() self._processing_parameters = queue_model_objects.ProcessingParameters( ) if self._beamline_setup_hwobj is not None: has_shutter_less = self._beamline_setup_hwobj.\ detector_has_shutterless() self._acquisition_parameters.shutterless = has_shutter_less self._acquisition_parameters = self._beamline_setup_hwobj.\ get_default_acquisition_parameters("default_helical_values") def set_beamline_setup(self, bl_setup_hwobj): CreateTaskBase.set_beamline_setup(self, bl_setup_hwobj) # At startup, if scene loaded from file, then update listwidget shapes = self._graphics_manager_hwobj.get_shapes() for shape in shapes: if isinstance(shape, GraphicsItemLine): self.shape_created(shape, "Line") def shape_created(self, shape, shape_type): if shape_type == "Line": self._lines_widget.lines_treewidget.clearSelection() #info_str_list = QStringList() info_str_list = [] info_str_list.append(shape.get_display_name()) info_str_list.append("%d" % shape.get_points_index()[0]) info_str_list.append("%d" % shape.get_points_index()[1]) lines_treewidget_item = QTreeWidgetItem(\ self._lines_widget.lines_treewidget, info_str_list) lines_treewidget_item.setSelected(True) self._lines_map[shape] = lines_treewidget_item self.lines_treewidget_selection_changed() def shape_deleted(self, shape, shape_type): if shape_type == "Line" and self._lines_map.get(shape): shape_index = self._lines_widget.lines_treewidget.\ indexFromItem(self._lines_map[shape]) self._lines_widget.lines_treewidget.\ takeTopLevelItem(shape_index.row()) self._lines_map.pop(shape) def shape_changed(self, shape, shape_type): lines_treewidget_item = self._lines_map.get(shape) if lines_treewidget_item: lines_treewidget_item.setText(1, "%d" % shape.get_points_index()[0]) lines_treewidget_item.setText(2, "%d" % shape.get_points_index()[1]) def approve_creation(self): base_result = CreateTaskBase.approve_creation(self) if len(self._lines_widget.lines_treewidget.selectedItems()) == 0: logging.getLogger("GUI").\ warning("No lines selected, please select one or more lines.") return False else: return base_result def update_processing_parameters(self, crystal): self._processing_parameters.space_group = crystal.space_group self._processing_parameters.cell_a = crystal.cell_a self._processing_parameters.cell_alpha = crystal.cell_alpha self._processing_parameters.cell_b = crystal.cell_b self._processing_parameters.cell_beta = crystal.cell_beta self._processing_parameters.cell_c = crystal.cell_c self._processing_parameters.cell_gamma = crystal.cell_gamma self._processing_widget.update_data_model(self._processing_parameters) def select_shape_with_cpos(self, start_cpos, end_cpos, num_images): selected_line = None self._lines_widget.overlay_slider.setEnabled(False) self._lines_widget.overlay_cbox.setEnabled(False) self._graphics_manager_hwobj.de_select_all() for shape in self._graphics_manager_hwobj.get_shapes(): if isinstance(shape, GraphicsItemLine): (start_cpos_index, end_cpos_index) = shape.get_points_index() if start_cpos_index == start_cpos.index and \ end_cpos_index == end_cpos.index: self._graphics_manager_hwobj.select_shape(shape) shape.set_num_images(num_images) selected_line = shape self._lines_widget.overlay_slider.setEnabled(True) self._lines_widget.overlay_cbox.setEnabled(True) #de-select previous selected list items and #select the current shape (Line). """ for (list_item, shape) in self._lines_map.iteritems(): if selected_line == shape: list_item.setSelected(True) else: list_item.setSelected(False) """ def single_item_selection(self, tree_item): CreateTaskBase.single_item_selection(self, tree_item) if isinstance(tree_item, Qt4_queue_item.SampleQueueItem): sample_model = tree_item.get_model() self._processing_parameters = sample_model.processing_parameters #self._processing_parameters = copy.deepcopy(self._processing_parameters) self._processing_widget.update_data_model( self._processing_parameters) elif isinstance(tree_item, Qt4_queue_item.BasketQueueItem): self.setDisabled(False) elif isinstance(tree_item, Qt4_queue_item.DataCollectionQueueItem): data_collection = tree_item.get_model() if data_collection.is_helical(): self.setDisabled(tree_item.get_model().is_executed()) self._path_template = data_collection.get_path_template() self._data_path_widget.update_data_model(self._path_template) self._acquisition_parameters = data_collection.acquisitions[0].\ acquisition_parameters if len(data_collection.acquisitions) == 2: start_cpos = data_collection.acquisitions[0].acquisition_parameters.\ centred_position end_cpos = data_collection.acquisitions[1].acquisition_parameters.\ centred_position num_images = data_collection.acquisitions[0].acquisition_parameters.\ num_images self.select_shape_with_cpos(start_cpos, end_cpos, num_images) self._acq_widget.update_data_model( self._acquisition_parameters, self._path_template) #self.get_acquisition_widget().use_osc_start(True) self._processing_parameters = data_collection.processing_parameters self._processing_widget.update_data_model( self._processing_parameters) else: self.setDisabled(True) else: self.setDisabled(True) if isinstance(tree_item, Qt4_queue_item.SampleQueueItem) or \ isinstance(tree_item, Qt4_queue_item.DataCollectionGroupQueueItem) or \ isinstance(tree_item, Qt4_queue_item.DataCollectionQueueItem): self._processing_widget.update_data_model( self._processing_parameters) self._acq_widget.update_data_model(self._acquisition_parameters, self._path_template) def _create_task(self, sample, shape): data_collections = [] for shape in self.get_selected_shapes(): snapshot = self._graphics_manager_hwobj.get_scene_snapshot(shape) # Acquisition for start position start_acq = self._create_acq(sample) start_graphical_point, end_graphical_point = \ shape.get_graphical_points() start_acq.acquisition_parameters.\ centred_position = copy.deepcopy(start_graphical_point.get_centred_position()) start_acq.acquisition_parameters.centred_position.\ snapshot_image = snapshot start_acq.path_template.suffix = self._session_hwobj.suffix # Add another acquisition for the end position end_acq = self._create_acq(sample) end_acq.acquisition_parameters.\ centred_position = copy.deepcopy(end_graphical_point.get_centred_position()) end_acq.acquisition_parameters.centred_position.\ snapshot_image = snapshot end_acq.path_template.suffix = self._session_hwobj.suffix processing_parameters = copy.deepcopy(self._processing_parameters) dc = queue_model_objects.DataCollection([start_acq, end_acq], sample.crystals[0], processing_parameters) dc.set_name(start_acq.path_template.get_prefix()) dc.set_number(start_acq.path_template.run_number) dc.set_experiment_type(EXPERIMENT_TYPE.HELICAL) dc.set_requires_centring(False) dc.run_processing_after = self._processing_widget.processing_widget.\ run_processing_after_cbox.isChecked() dc.run_processing_parallel = self._processing_widget.processing_widget.\ run_processing_parallel_cbox.isChecked() data_collections.append(dc) self._path_template.run_number += 1 return data_collections def set_max_osc_total_range_clicked(self): num_images = int( self._acq_widget.acq_widget_layout.num_images_ledit.text()) (lower, upper), exp_time = self._acq_widget.update_osc_total_range_limits() self._acq_widget.acq_widget_layout.osc_start_ledit.setText(\ "%.2f" % lower) self._acq_widget.acq_widget_layout.osc_total_range_ledit.setText(\ "%.2f" % abs(upper - lower)) self._acq_widget.acq_widget_layout.osc_range.setText(\ "%.2f" % (abs(lower - upper) / 2 / num_images)) def lines_treewidget_selection_changed(self): self.enable_widgets(\ len(self._lines_widget.lines_treewidget.selectedItems()) > 0) self._lines_widget.remove_line_button.setEnabled(\ len(self._lines_widget.lines_treewidget.selectedItems()) > 0) self._lines_widget.swap_points_button.setEnabled(\ len(self._lines_widget.lines_treewidget.selectedItems()) > 0) for shape, list_item in self._lines_map.iteritems(): self._graphics_manager_hwobj.select_shape(shape, list_item.isSelected()) self._acq_widget.emit_acq_parameters_changed() def create_line_button_clicked(self): self._graphics_manager_hwobj.create_line() def create_auto_line_button_clicked(self): self._graphics_manager_hwobj.create_auto_line() def remove_line_button_clicked(self): line_to_delete = None for line, treewidget_item in self._lines_map.iteritems(): if treewidget_item.isSelected(): line_to_delete = line break if line_to_delete: self._graphics_manager_hwobj.delete_shape(line_to_delete) self.lines_treewidget_selection_changed() def get_selected_shapes(self): selected_lines = [] for line, treewidget_item in self._lines_map.iteritems(): if treewidget_item.isSelected(): selected_lines.append(line) return selected_lines def overlay_toggled(self, state): self._graphics_manager_hwobj.set_display_overlay(state) def overlay_alpha_changed(self, alpha_value): for line, treewidget_item in self._lines_map.iteritems(): if treewidget_item.isSelected(): line.set_fill_alpha(alpha_value) def swap_points_clicked(self): for line, treewidget_item in self._lines_map.iteritems(): if treewidget_item.isSelected(): self._graphics_manager_hwobj.swap_line_points(line)