def rooFit203():
print ">>> setup model..."
x = RooRealVar("x", "x", -10, 10)
mean = RooRealVar("mean", "mean of gaussian", 0, -10, 10)
gauss = RooGaussian("gauss", "gaussian PDF", x, mean, RooConst(1))
# Construct px = 1 (flat in x)
px = RooPolynomial("px", "px", x)
# Construct model = f*gx + (1-f)px
f = RooRealVar("f", "f", 0., 1.)
model = RooAddPdf("model", "model", RooArgList(gauss, px), RooArgList(f))
data = model.generate(RooArgSet(x), 10000) # RooDataSet
print ">>> fit to full data range..."
result_full = model.fitTo(data, Save(kTRUE)) # RooFitResult
print "\n>>> fit \"signal\" range..."
# Define "signal" range in x as [-3,3]
x.setRange("signal", -3, 3)
result_sig = model.fitTo(data, Save(kTRUE),
Range("signal")) # RooFitResult
print "\n>>> plot and print results..."
# Make plot frame in x and add data and fitted model
frame1 = x.frame(Title("Fitting a sub range")) # RooPlot
data.plotOn(frame1, Name("data"))
model.plotOn(frame1, Range("Full"), LineColor(kBlue),
Name("model")) # Add shape in full ranged dashed
model.plotOn(frame1, LineStyle(kDashed), LineColor(kRed),
Name("model2")) # By default only fitted range is shown
print "\n>>> result of fit on all data:"
result_full.Print()
print "\n>>> result of fit in in signal region (note increased error on signal fraction):"
result_sig.Print()
print ">>> draw on canvas..."
canvas = TCanvas("canvas", "canvas", 100, 100, 800, 600)
legend = TLegend(0.2, 0.85, 0.4, 0.65)
legend.SetTextSize(0.032)
legend.SetBorderSize(0)
legend.SetFillStyle(0)
gPad.SetLeftMargin(0.14)
gPad.SetRightMargin(0.02)
frame1.GetYaxis().SetLabelOffset(0.008)
frame1.GetYaxis().SetTitleOffset(1.4)
frame1.GetYaxis().SetTitleSize(0.045)
frame1.GetXaxis().SetTitleSize(0.045)
frame1.Draw()
legend.AddEntry("data", "data", 'LEP')
legend.AddEntry("model", "fit (full range)", 'L')
legend.AddEntry("model2", "fit (signal range)", 'L')
legend.Draw()
canvas.SaveAs("rooFit203.png")
def rooFit510():
print ">>> create and fill workspace..."
workspace = RooWorkspace("workspace") # RooWorkspace
fillWorkspace(workspace)
print ">>>\n>>> retrieve model from workspace..."
# Exploit convention encoded in named set "parameters" and "observables"
# to use workspace contents w/o need for introspected
model = workspace.pdf("model") # RooAbsPdf
print ">>> generate and fit data in given observables"
data = model.generate(workspace.set("observables"), 1000) # RooDataSet
model.fitTo(data)
print ">>> plot model and data of first observables..."
frame1 = workspace.set("observables").first().frame() # RooPlot
data.plotOn(frame1, Name("data"), Binning(50))
model.plotOn(frame1, Name("model"))
print ">>> overlay plots with reference parameters as stored in snapshots..."
workspace.loadSnapshot("reference_fit")
model.plotOn(frame1, LineColor(kRed), Name("model_ref"))
workspace.loadSnapshot("reference_fit_bkgonly")
model.plotOn(frame1, LineColor(kRed), LineStyle(kDashed), Name("bkg_ref"))
print "\n>>> draw on canvas..."
canvas = TCanvas("canvas", "canvas", 100, 100, 800, 600)
legend = TLegend(0.2, 0.8, 0.4, 0.6)
legend.SetTextSize(0.032)
legend.SetBorderSize(0)
legend.SetFillStyle(0)
gPad.SetLeftMargin(0.15)
gPad.SetRightMargin(0.02)
frame1.GetYaxis().SetLabelOffset(0.008)
frame1.GetYaxis().SetTitleOffset(1.5)
frame1.GetYaxis().SetTitleSize(0.045)
frame1.GetXaxis().SetTitleSize(0.045)
frame1.Draw()
legend.AddEntry("data", "data", 'LEP')
legend.AddEntry("model", "model", 'L')
legend.AddEntry("model_ref", "model fit", 'L')
legend.AddEntry("bkg_ref", "background only fit", 'L')
legend.Draw()
canvas.SaveAs("rooFit510.png")
# Print workspace contents
workspace.Print()
# Workspace will remain in memory after macro finishes
gDirectory.Add(workspace)
def rooFit208():
print ">>> setup component pdfs..."
t = RooRealVar("t", "t", -10, 30)
ml = RooRealVar("ml", "mean landau", 5., -20, 20)
sl = RooRealVar("sl", "sigma landau", 1, 0.1, 10)
landau = RooLandau("lx", "lx", t, ml, sl)
mg = RooRealVar("mg", "mg", 0)
sg = RooRealVar("sg", "sg", 2, 0.1, 10)
gauss = RooGaussian("gauss", "gauss", t, mg, sg)
print ">>> construct convolution pdf..."
# Set #bins to be used for FFT sampling to 10000
t.setBins(10000, "cache")
# Construct landau (x) gauss
convolution = RooFFTConvPdf("lxg", "landau (X) gauss", t, landau, gauss)
print ">>> sample, fit and plot convoluted pdf..."
data = convolution.generate(RooArgSet(t), 10000) # RooDataSet
convolution.fitTo(data)
print "\n>>> plot everything..."
frame1 = t.frame(Title("landau #otimes gauss convolution")) # RooPlot
data.plotOn(frame1, Binning(50), Name("data"))
convolution.plotOn(frame1, Name("lxg"))
gauss.plotOn(frame1, LineStyle(kDashed), LineColor(kRed), Name("gauss"))
landau.plotOn(frame1, LineStyle(kDashed), LineColor(kGreen),
Name("landau"))
print "\n>>> draw pfds and fits on canvas..."
canvas = TCanvas("canvas", "canvas", 100, 100, 800, 600)
legend = TLegend(0.6, 0.8, 0.8, 0.6)
legend.SetTextSize(0.032)
legend.SetBorderSize(0)
legend.SetFillStyle(0)
gPad.SetLeftMargin(0.15)
gPad.SetRightMargin(0.02)
frame1.GetYaxis().SetLabelOffset(0.008)
frame1.GetYaxis().SetTitleOffset(1.5)
frame1.GetYaxis().SetTitleSize(0.045)
frame1.GetXaxis().SetTitleSize(0.045)
frame1.Draw()
legend.AddEntry("data", "data", 'LEP')
legend.AddEntry("lxg", "convolution", 'L')
legend.AddEntry("landau", "landau", 'L')
legend.AddEntry("gauss", "gauss", 'L')
legend.Draw()
canvas.SaveAs("rooFit208.png")
def rooFit106():
print ">>> setup model..."
x = RooRealVar("x", "x", -3, 3)
mean = RooRealVar("mean", "mean of gaussian", 1, -10, 10)
sigma = RooRealVar("sigma", "width of gaussian", 1, 0.1, 10)
gauss = RooGaussian("gauss", "gauss", x, mean, sigma)
data = gauss.generate(RooArgSet(x), 10000) # RooDataSet
gauss.fitTo(data)
print ">>> plot pdf and data..."
frame = x.frame(Name("frame"), Title("RooPlot with decorations"),
Bins(40)) # RooPlot
data.plotOn(frame)
gauss.plotOn(frame)
print ">>> RooGaussian::paramOn - add box with pdf parameters..."
# https://root.cern.ch/doc/master/classRooAbsPdf.html#aa43b2556a1b419bad2b020ba9b808c1b
# Layout(Double_t xmin, Double_t xmax, Double_t ymax)
# left edge of box starts at 20% of x-axis
gauss.paramOn(frame, Layout(0.55))
print ">>> RooDataSet::statOn - add box with data statistics..."
# https://root.cern.ch/doc/master/classRooAbsData.html#a538d58020b296a1623323a84d2bb8acb
# x size of box is from 55% to 99% of x-axis range, top of box is at 80% of y-axis range)
data.statOn(frame, Layout(0.20, 0.55, 0.8))
print ">>> add text and arrow..."
text = TText(2, 100, "Signal")
text.SetTextSize(0.04)
text.SetTextColor(kRed)
frame.addObject(text)
arrow = TArrow(2, 100, -1, 50, 0.01, "|>")
arrow.SetLineColor(kRed)
arrow.SetFillColor(kRed)
arrow.SetLineWidth(3)
frame.addObject(arrow)
print ">>> persist frame with all decorations in ROOT file..."
file = TFile("rooFit106.root", "RECREATE")
frame.Write()
file.Close()
# To read back and plot frame with all decorations in clean root session do
# [0] TFile f("rooFit106.root")
# [1] xframe->Draw()
print ">>> draw functions and toy data on canvas..."
canvas = TCanvas("canvas", "canvas", 100, 100, 800, 600)
gPad.SetLeftMargin(0.15)
gPad.SetRightMargin(0.05)
frame.GetYaxis().SetTitleOffset(1.6)
frame.GetYaxis().SetLabelOffset(0.010)
frame.GetYaxis().SetTitleSize(0.045)
frame.GetYaxis().SetLabelSize(0.042)
frame.GetXaxis().SetTitleSize(0.045)
frame.GetXaxis().SetLabelSize(0.042)
frame.Draw()
canvas.SaveAs("rooFit106.png")
def rooFit503():
print ">>> open and workspace file, list its contents and get workspace object..."
file = TFile("rooFit502_workspace.root")
file.ls()
workspace = file.Get("workspace") # RooWorkspace
print "\n>>> retrieve pdf, data from workspace..."
x = workspace.var("x") # RooRealVar
model = workspace.pdf("model") # RooAbsPdf
data = workspace.data("modelData")
print ">>> print model tree:..."
model.Print("t")
print "\n>>> fit model to data..."
model.fitTo(data)
frame1 = x.frame(Title("Model and data read from workspace")) # RooPlot
print ">>> plot everything..."
data.plotOn(frame1, Name("data"), Binning(40))
model.plotOn(frame1, Name("model"))
model.plotOn(frame1, Components("bkg"), LineStyle(kDashed), Name("bkg"))
model.plotOn(frame1, Components("bkg,sig2"), LineStyle(kDotted),
Name("bkgsig2"))
print "\n>>> draw on canvas..."
canvas = TCanvas("canvas", "canvas", 100, 100, 800, 600)
legend = TLegend(0.2, 0.8, 0.4, 0.6)
legend.SetTextSize(0.032)
legend.SetBorderSize(0)
legend.SetFillStyle(0)
gPad.SetLeftMargin(0.15)
gPad.SetRightMargin(0.02)
frame1.GetYaxis().SetLabelOffset(0.008)
frame1.GetYaxis().SetTitleOffset(1.5)
frame1.GetYaxis().SetTitleSize(0.045)
frame1.GetXaxis().SetTitleSize(0.045)
frame1.Draw()
legend.AddEntry("data", "data", 'LEP')
legend.AddEntry("model", "model", 'L')
legend.AddEntry("bkg", "background only", 'L')
legend.AddEntry("bkgsig2", "background + signal 2", 'L')
legend.Draw()
canvas.SaveAs("rooFit503.png")
def rooFit107():
print ">>> setup model..."
x = RooRealVar("x","x",-3,3)
mean = RooRealVar("mean","mean of gaussian",1,-10,10)
sigma = RooRealVar("sigma","width of gaussian",1,0.1,10)
gauss = RooGaussian("gauss","gauss",x,mean,sigma)
data = gauss.generate(RooArgSet(x),1000) # RooDataSet
gauss.fitTo(data)
print ">>> plot pdf and data..."
frame1 = x.frame(Name("frame1"),Title("Red Curve / SumW2 Histo errors"),Bins(20)) # RooPlot
frame2 = x.frame(Name("frame2"),Title("Dashed Curve / No XError bars"),Bins(20)) # RooPlot
frame3 = x.frame(Name("frame3"),Title("Filled Curve / Blue Histo"),Bins(20)) # RooPlot
frame4 = x.frame(Name("frame4"),Title("Partial Range / Filled Bar chart"),Bins(20)) # RooPlot
print ">>> data plotting styles..."
data.plotOn(frame1,DataError(RooAbsData.SumW2))
data.plotOn(frame2,XErrorSize(0)) # Remove horizontal error bars
data.plotOn(frame3,MarkerColor(kBlue),LineColor(kBlue)) # Blue markers and error bors
data.plotOn(frame4,DrawOption("B"),DataError(RooAbsData.None),
XErrorSize(0),FillColor(kGray)) # Filled bar chart
print ">>> data plotting styles..."
gauss.plotOn(frame1,LineColor(kRed))
gauss.plotOn(frame2,LineStyle(kDashed)) # Change line style to dashed
gauss.plotOn(frame3,DrawOption("F"),FillColor(kOrange),MoveToBack()) # Filled shapes in green color
gauss.plotOn(frame4,Range(-8,3),LineColor(kMagenta))
print ">>> draw pfds and fits on canvas..."
canvas = TCanvas("canvas","canvas",100,100,1000,1200)
canvas.Divide(2,2)
for i, frame in enumerate([frame1,frame2,frame3,frame4],1):
canvas.cd(i)
gPad.SetLeftMargin(0.15); gPad.SetRightMargin(0.05)
frame.GetYaxis().SetTitleOffset(1.6)
frame.GetYaxis().SetLabelOffset(0.010)
frame.GetYaxis().SetTitleSize(0.045)
frame.GetYaxis().SetLabelSize(0.042)
frame.GetXaxis().SetTitleSize(0.045)
frame.GetXaxis().SetLabelSize(0.042)
frame.Draw()
canvas.SaveAs("rooFit107.png")
print(signaldata.numEntries())
print(rigthsidedata.numEntries())
leftsidehist.Scale(theRatio)
rightsidehist.Scale(theRatio)
sidehist = leftsidehist.Clone()
sidehist.Add(rightsidehist)
plotpad.cd()
kkFrame = tt_mass.frame(Range(fitphimin, fitphimax), Title("#phi mass"))
# kkbins = RooBinning(-15,15)
# kkbins.addUniform(30,fitphimin,fitphimax)
traKFitData.plotOn(kkFrame, Name("Data"))
kkTot.plotOn(kkFrame, RooFit.Normalization(1.0 / float(nfit)), Name("Pdf"))
traKFitData.plotOn(kkFrame)
kkTot.paramOn(kkFrame, RooFit.Layout(0.57, 0.99, 0.65))
kkFrame.Draw()
pullpad.cd()
hpull = kkFrame.pullHist("Data", "Pdf")
pullframe = mmtt_mass.frame(Title("Pull Distribution"),
Range(fitphimin, fitphimax))
pullframe.SetAxisRange(-5.0, 5.0, "Y")
#pullframe.GetXaxis().SetTitleSize(0.04)
#pullframe.GetYaxis().SetTitleSize(0.03)
gStyle.SetTitleFontSize(0.07)
pullframe.addPlotable(hpull, "P")
def rooFit204():
print ">>> setup model signal components: gaussians..."
x = RooRealVar("x","x",0,10)
mean = RooRealVar("mean","mean of gaussian",5)
sigma1 = RooRealVar("sigma1","width of gaussians",0.5)
sigma2 = RooRealVar("sigma2","width of gaussians",1)
sig1 = RooGaussian("sig1","Signal component 1",x,mean,sigma1)
sig2 = RooGaussian("sig2","Signal component 2",x,mean,sigma2)
sig1frac = RooRealVar("sig1frac","fraction of component 1 in signal",0.8,0.,1.)
sig = RooAddPdf("sig","Signal",RooArgList(sig1,sig2),RooArgList(sig1frac))
print ">>> setup model background components: Chebychev polynomial..."
a0 = RooRealVar("a0","a0",0.5,0.,1.)
a1 = RooRealVar("a1","a1",-0.2,0.,1.)
bkg = RooChebychev("bkg","Background",x,RooArgList(a0,a1))
print ">>> construct extended components with specified range..."
# Define signal range in which events counts are to be defined
x.setRange("signalRange",5,6)
# Associated nsig/nbkg as expected number of events with sig/bkg _in_the_range_ "signalRange"
nsig = RooRealVar("nsig","number of signal events in signalRange", 500,0.,10000)
nbkg = RooRealVar("nbkg","number of background events in signalRange",500,0,10000)
esig = RooExtendPdf("esig","extended signal pdf", sig,nsig,"signalRange")
ebkg = RooExtendPdf("ebkg","extended background pdf",bkg,nbkg,"signalRange")
print ">>> sum extended components..."
# Construct sum of two extended p.d.f. (no coefficients required)
model = RooAddPdf("model","(g1+g2)+a",RooArgList(ebkg,esig))
print ">>> sample data, fit model..."
data = model.generate(RooArgSet(x),1000) # RooDataSet
result = model.fitTo(data,Extended(kTRUE),Save()) # RooFitResult
print "\n>>> fit result:"
result.Print()
print "\n>>> plot everything..."
frame1 = x.frame(Title("Fitting a sub range")) # RooPlot
data.plotOn(frame1,Binning(50),Name("data"))
model.plotOn(frame1,LineColor(kBlue),Name("model"))
argset1 = RooArgSet(bkg)
model.plotOn(frame1,Components(argset1),LineStyle(kDashed),LineColor(kBlue),Name("bkg"),Normalization(1.0,RooAbsReal.RelativeExpected))
#model.plotOn(frame1,Components(argset1),LineStyle(kDashed),LineColor(kRed),Name("bkg2"))
print ">>> draw on canvas..."
canvas = TCanvas("canvas","canvas",100,100,800,600)
legend = TLegend(0.2,0.85,0.4,0.7)
legend.SetTextSize(0.032)
legend.SetBorderSize(0)
legend.SetFillStyle(0)
gPad.SetLeftMargin(0.14); gPad.SetRightMargin(0.02)
frame1.GetYaxis().SetLabelOffset(0.008)
frame1.GetYaxis().SetTitleOffset(1.4)
frame1.GetYaxis().SetTitleSize(0.045)
frame1.GetXaxis().SetTitleSize(0.045)
frame1.Draw()
legend.AddEntry("data", "data", 'LEP')
legend.AddEntry("model", "fit", 'L')
legend.AddEntry("bkg", "background only",'L')
#legend.AddEntry("bkg2", "background only (no extended norm)",'L')
legend.Draw()
canvas.SaveAs("rooFit204.png")
def rooFit202():
print ">>> setup model component: gaussian signals and Chebychev polynomial background..."
x = RooRealVar("x", "x", 0, 10)
mean = RooRealVar("mean", "mean of gaussian", 5)
sigma1 = RooRealVar("sigma1", "width of gaussian", 0.5)
sigma2 = RooRealVar("sigma2", "width of gaussian", 1.0)
sig1 = RooGaussian("sig1", "Signal component 1", x, mean, sigma1)
sig2 = RooGaussian("sig2", "Signal component 2", x, mean, sigma2)
a0 = RooRealVar("a0", "a0", 0.5, 0., 1.)
a1 = RooRealVar("a1", "a1", -0.2, 0., 1.)
bkg = RooChebychev("bkg", "Background", x, RooArgList(a0, a1))
# Sum the signal components into a composite signal p.d.f.
sig1frac = RooRealVar("sig1frac", "fraction of component 1 in signal", 0.8,
0., 1.)
sig = RooAddPdf("sig", "Signal", RooArgList(sig1, sig2),
RooArgList(sig1frac))
print ">>>\n>>> METHOD 1"
print ">>> construct extended composite model..."
# Sum the composite signal and background into an extended pdf nsig*sig+nbkg*bkg
nsig = RooRealVar("nsig", "number of signal events", 500, 0., 10000)
nbkg = RooRealVar("nbkg", "number of background events", 500, 0, 10000)
model = RooAddPdf("model", "(g1+g2)+a", RooArgList(bkg, sig),
RooArgList(nbkg, nsig))
print ">>> sample, fit and plot extended model...\n"
# Generate a data sample of expected number events in x from model
# nsig + nbkg = model.expectedEvents()
# NOTE: since the model predicts a specific number events, one can
# omit the requested number of events to be generated
# Introduce Poisson fluctuation with Extended(kTRUE)
data = model.generate(RooArgSet(x), Extended(kTRUE)) # RooDataSet
# Fit model to data, extended ML term automatically included
# NOTE: Composite extended pdfs can only be successfully fit if the extended likelihood
# term -log(Poisson(Nobs,Nexp)) is included in the minimization because they have
# one extra degree of freedom in their parameterization that is constrained by
# this extended term. If a pdf is capable of calculating an extended term (i.e.
# any extended RooAddPdf), the extended term is AUTOMATICALLY included in the
# likelihood calculation. Override this behaviour with Extended():
# Extended(kTRUE) ADD extended likelihood term
# Extended(kFALSE) DO NOT ADD extended likelihood
#model.fitTo(data,Extended(kTRUE))
model.fitTo(data)
print "\n>>> plot data, model and model components..."
# Plot data and PDF overlaid, use expected number of events for pdf projection
# normalization, rather than observed number of events, data.numEntries()
frame1 = x.frame(Title("extended ML fit example")) # RooPlot
data.plotOn(frame1, Binning(30), Name("data"))
model.plotOn(frame1, Normalization(1.0, RooAbsReal.RelativeExpected),
Name("model"))
# Overlay the background components of model
# NOTE: By default, the pdf is normalized to event count of the last dataset added
# to the plot frame. Use "RelativeExpected" to normalize to the expected
# event count of the pdf instead
argset1 = RooArgSet(bkg)
argset2 = RooArgSet(sig1)
argset3 = RooArgSet(sig2)
argset4 = RooArgSet(bkg, sig2)
model.plotOn(frame1, Components(argset1), LineStyle(kDashed),
LineColor(kBlue),
Normalization(1.0, RooAbsReal.RelativeExpected), Name("bkg"))
#model.plotOn(frame1,Components(argset1),LineStyle(kDashed),LineColor(kBlue), Name("bkg2"))
model.plotOn(frame1, Components(argset2), LineStyle(kDotted),
LineColor(kMagenta),
Normalization(1.0, RooAbsReal.RelativeExpected), Name("sig1"))
model.plotOn(frame1, Components(argset3), LineStyle(kDotted),
LineColor(kPink),
Normalization(1.0, RooAbsReal.RelativeExpected), Name("sig2"))
model.plotOn(frame1, Components(argset4), LineStyle(kDashed),
LineColor(kAzure - 4),
Normalization(1.0, RooAbsReal.RelativeExpected),
Name("bkgsig2"))
print "\n>>> structure of composite pdf:"
model.Print("t") # "tree" mode
print "\n>>> parameters:"
params = model.getVariables() # RooArgSet
params.Print("v")
params.Print()
print "\n>>> params.find(\"...\").getVal():"
print ">>> sigma1 = %.2f" % params.find("sigma1").getVal()
print ">>> sigma2 = %.2f" % params.find("sigma2").getVal()
print ">>> nsig = %6.2f, sig1frac = %5.2f" % (
params.find("nsig").getVal(), params.find("sig1frac").getVal())
print ">>> nbkg = %6.2f" % params.find("nbkg").getVal()
print ">>>\n>>> components:"
comps = model.getComponents() # RooArgSet
sig = comps.find("sig") # RooAbsArg
sigVars = sig.getVariables() # RooArgSet
sigVars.Print()
print ">>>\n>>> METHOD 2"
print ">>> construct extended components first..."
# Associated nsig/nbkg as expected number of events with sig/bkg
nsig = RooRealVar("nsig", "number of signal events", 500, 0., 10000)
nbkg = RooRealVar("nbkg", "number of background events", 500, 0, 10000)
esig = RooExtendPdf("esig", "extended signal pdf", sig, nsig)
ebkg = RooExtendPdf("ebkg", "extended background pdf", bkg, nbkg)
print ">>> sum extended components without coefficients..."
# Construct sum of two extended p.d.f. (no coefficients required)
model2 = RooAddPdf("model2", "(g1+g2)+a", RooArgList(ebkg, esig))
# METHOD 2 is functionally completely equivalent to METHOD 1.
# Its advantage is that the yield parameter is associated to the shape pdf
# directly, while in METHOD 1 the association is made after constructing
# a RooAddPdf. Also, class RooExtendPdf offers extra functionality to
# interpret event counts in a different range.
print ">>> plot model..."
model2.plotOn(frame1, LineStyle(kDashed), LineColor(kRed),
Normalization(1.0, RooAbsReal.RelativeExpected),
Name("model2"))
print ">>> draw on canvas..."
canvas = TCanvas("canvas", "canvas", 100, 100, 800, 600)
legend = TLegend(0.2, 0.85, 0.4, 0.65)
legend.SetTextSize(0.032)
legend.SetBorderSize(0)
legend.SetFillStyle(0)
gPad.SetLeftMargin(0.14)
gPad.SetRightMargin(0.02)
frame1.GetYaxis().SetLabelOffset(0.008)
frame1.GetYaxis().SetTitleOffset(1.4)
frame1.GetYaxis().SetTitleSize(0.045)
frame1.GetXaxis().SetTitleSize(0.045)
frame1.Draw()
legend.AddEntry("data", "data", 'LEP')
legend.AddEntry("model", "composite model", 'L')
legend.AddEntry("model2", "composite model (method 2)", 'L')
legend.AddEntry("bkg", "background only", 'L')
#legend.AddEntry("bkg2", "background only (no extended norm)", 'L')
legend.AddEntry("sig1", "signal 1", 'L')
legend.AddEntry("sig2", "signal 2", 'L')
legend.AddEntry("bkgsig2", "background + signal 2", 'L')
legend.Draw()
canvas.SaveAs("rooFit202.png")
def rooFit110():
print ">>> setup model..."
x = RooRealVar("x","x",-10,10)
mean = RooConst(-2)
sigma = RooConst(3)
gauss = RooGaussian("gauss","gauss",x,mean,sigma)
frame1 = x.frame(Title("Gaussian pdf")) # RooPlot
gauss.plotOn(frame1)
print ">>> retrieve raw & normalized values of RooFit pdfs...\n>>>"
# Return 'raw' unnormalized value of gauss
print ">>> raw value: gauss.getVal( ) = %.3f" % gauss.getVal() + " depends on x range"
print ">>> normalization: gauss.getVal(x) = %.3f" % gauss.getVal(RooArgSet(x))
print ">>> normalization: gauss.getNorm(x) = %.3f" % gauss.getNorm(RooArgSet(x))
print ">>> 1/(sigma*sqrt(2*pi)) = %.3f" % (1/(sigma.getValV()*sqrt(2*pi)))
# Create object representing integral over gauss
# which is used to calculate gauss_Norm[x] == gauss / gauss_Int[x]
igauss = gauss.createIntegral(RooArgSet(x)) # RooAbsReal
print ">>> integral: igauss.getVal( ) = %.3f" % igauss.getVal()
print ">>> igauss.getVal(x) = %.3f" % igauss.getVal(RooArgSet(x))
print ">>> 1/igauss.getVal(x) = %.3f" % (1/igauss.getVal(RooArgSet(x)))
print ">>> gauss.getVal()/igauss.getVal(x) = %.3f" % (gauss.getVal()/igauss.getVal(RooArgSet(x)))
# maximum
print ">>> maximum: gauss.getMaxVal(x) = %.3f" % gauss.getMaxVal(RooArgSet(x))
print ">>> gauss.getMax(0) = %.3f" % gauss.maxVal(0)
print ">>> gauss.getMax(1) = %.3f" % gauss.maxVal(1)
print ">>> gauss.asTF(x).GetMaximumX() = %.3f" % gauss.asTF(RooArgList(x)).GetMaximumX()
print ">>> gauss.asTF(x).GetMaximum() = %.3f" % gauss.asTF(RooArgList(x)).GetMaximum()
xmaxVal = gauss.asTF(RooArgList(x)).GetMaximumX()
xmax = RooRealVar("x_max","x_max",xmaxVal)
x.setVal(xmaxVal)
print ">>> gauss.getVal( ) = %.3f" % gauss.getVal()
print ">>> gauss.getVal(xmax) = %.3f" % gauss.getVal(RooArgSet(x))
print ">>> gauss.getVal(xmax) = %.3f" % gauss.getVal(RooArgSet(xmax))
print ">>> plot"
frame2 = x.frame(Title("integral of Gaussian pdf")) # RooPlot
line1 = RooLinearVar("line1","line1",x,RooConst(0),RooConst(gauss.getVal()))
line2 = RooLinearVar("line2","line2",x,RooConst(0),RooConst(gauss.getVal(RooArgSet(x))))
igauss.plotOn(frame2,LineColor(kBlue), Name(igauss.GetName()))
line1.plotOn( frame2,LineColor(kRed), Name(line1.GetName()))
line2.plotOn( frame2,LineColor(kGreen),Name(line2.GetName()))
print ">>>\n>>> integrate normalized pdf over subrange..."
# Define a range named "signal" in x from -5,5
x.setRange("signal",-5,5)
# Create an integral of gauss_Norm[x] over x in range "signal"
# This is the fraction of of p.d.f. gauss_Norm[x] which is in
# the range named "signal"
igauss_sig = gauss.createIntegral(RooArgSet(x),NormSet(RooArgSet(x)),Range("signal")) # RooAbsReal
print ">>> gauss_Int[x|signal]_Norm[x] = %.2f" % igauss_sig.getVal()
print ">>> construct cumulative distribution function from pdf..."
# Create the cumulative distribution function of
# gauss, i.e. calculate Int[-10,x] gauss(x') dx'
gauss_cdf = gauss.createCdf(RooArgSet(x)) # RooAbsReal
frame3 = x.frame(Title("cdf of Gaussian pdf")) # RooPlot
gauss_cdf.plotOn(frame3)
print ">>> draw functions on canvas..."
canvas = TCanvas("canvas","canvas",100,100,2000,400)
legend = TLegend(0.6,0.6,0.8,0.42)
legend.SetTextSize(0.032)
legend.SetBorderSize(0)
legend.SetFillStyle(0)
canvas.Divide(3)
for i, frame in enumerate([frame1,frame2,frame3],1):
canvas.cd(i)
gPad.SetLeftMargin(0.14); gPad.SetRightMargin(0.04)
frame.GetYaxis().SetTitleOffset(1.6)
frame.GetYaxis().SetLabelOffset(0.010)
frame.GetYaxis().SetTitleSize(0.045)
frame.GetYaxis().SetLabelSize(0.042)
frame.GetXaxis().SetTitleSize(0.045)
frame.GetXaxis().SetLabelSize(0.042)
frame.Draw()
if i is 2:
legend.AddEntry(line1.GetName(), " gauss.getVal( )",'L')
legend.AddEntry(line2.GetName(), " gauss.getVal(x)",'L')
legend.AddEntry(igauss.GetName(),"igauss.getVal( )",'L')
legend.Draw()
canvas.SaveAs("rooFit110.png")
def rooFit111():
print ">>> setup model..."
x = RooRealVar("x", "x", -10, 10)
mean = RooRealVar("mean", "mean of gaussian", 1, -10, 10)
sigma = RooRealVar("sigma", "width of gaussian", 1, 0.1, 10)
gauss = RooGaussian("gauss", "gaussian PDF", x, mean, sigma)
print ">>> create and plot derivatives wrt x..."
dgdx = gauss.derivative(x, 1) # RooAbsReal
d2gdx2 = gauss.derivative(x, 2) # RooAbsReal
d3gdx3 = gauss.derivative(x, 3) # RooAbsReal
print ">>> plot gaussian and its first two derivatives..."
frame1 = x.frame(Title("d^{n}(Gauss)/dx^{n}")) # RooPlot
norm1 = 10
gauss.plotOn(frame1, LineColor(kBlue), Name(gauss.GetName()),
Normalization(norm1))
dgdx.plotOn(frame1, LineColor(kMagenta), Name("dgdx"))
d2gdx2.plotOn(frame1, LineColor(kRed), Name("d2gdx2"))
d3gdx3.plotOn(frame1, LineColor(kOrange), Name("d3gdx3"))
print ">>> create and plot derivatives wrt sigma..."
dgds = gauss.derivative(sigma, 1) # RooAbsReal
d2gds2 = gauss.derivative(sigma, 2) # RooAbsReal
d3gds3 = gauss.derivative(sigma, 3) # RooAbsReal
print ">>> plot gaussian and its first two derivatives..."
frame2 = sigma.frame(Title("d^{n}(Gauss)/d(sigma)^{n}"),
Range(0., 2.)) # RooPlot
(norm2, norm21, norm22) = (8000, 15, 5)
gauss.plotOn(frame2, LineColor(kBlue), Name(gauss.GetName()),
Normalization(norm2))
dgds.plotOn(frame2, LineColor(kMagenta), Name("dgds"),
Normalization(norm21))
d2gds2.plotOn(frame2, LineColor(kRed), Name("d2gds2"),
Normalization(norm22))
d3gds3.plotOn(frame2, LineColor(kOrange), Name("d3gds3"))
print ">>> draw pdfs and fits on canvas..."
canvas = TCanvas("canvas", "canvas", 100, 100, 1400, 600)
legend1 = TLegend(0.22, 0.85, 0.4, 0.65)
legend2 = TLegend(0.60, 0.85, 0.8, 0.65)
for legend in [legend1, legend2]:
legend.SetTextSize(0.032)
legend.SetBorderSize(0)
legend.SetFillStyle(0)
canvas.Divide(2)
canvas.cd(1)
gPad.SetLeftMargin(0.15)
gPad.SetRightMargin(0.02)
frame1.GetYaxis().SetLabelOffset(0.008)
frame1.GetYaxis().SetTitleOffset(1.6)
frame1.GetYaxis().SetTitleSize(0.045)
frame1.GetXaxis().SetTitleSize(0.045)
frame1.Draw()
legend1.AddEntry(gauss.GetName(), "gaussian G (#times%s)" % norm1, 'L')
legend1.AddEntry("dgdx", "d(G)/dx", 'L')
legend1.AddEntry("d2gdx2", "d^{2}(G)/dx^{2}", 'L')
legend1.AddEntry("d3gdx3", "d^{3}(G)/dx^{3}", 'L')
legend1.Draw()
canvas.cd(2)
gPad.SetLeftMargin(0.15)
gPad.SetRightMargin(0.02)
frame2.GetYaxis().SetLabelOffset(0.008)
frame2.GetYaxis().SetTitleOffset(1.6)
frame2.GetYaxis().SetTitleSize(0.045)
frame2.GetXaxis().SetTitleSize(0.045)
frame2.Draw()
legend2.AddEntry(gauss.GetName(), "gaussian G (#times%s)" % norm2, 'L')
legend2.AddEntry("dgds", "d(G)/ds (#times%s)" % norm21, 'L')
legend2.AddEntry("d2gds2", "d^{2}(G)/ds^{2} (#times%s)" % norm22, 'L')
legend2.AddEntry("d3gds3", "d^{3}(G)/ds^{3}", 'L')
legend2.Draw()
canvas.SaveAs("rooFit111.png")
def rooFit205():
print ">>> setup model signal components: gaussians..."
x = RooRealVar("x", "x", 0, 10)
mean = RooRealVar("mean", "mean of gaussians", 5)
sigma1 = RooRealVar("sigma1", "width of gaussians", 0.5)
sigma2 = RooRealVar("sigma2", "width of gaussians", 1)
sig1 = RooGaussian("sig1", "Signal component 1", x, mean, sigma1)
sig2 = RooGaussian("sig2", "Signal component 2", x, mean, sigma2)
sig1frac = RooRealVar("sig1frac", "fraction of component 1 in signal", 0.8,
0., 1.)
sig = RooAddPdf("sig", "Signal", RooArgList(sig1, sig2),
RooArgList(sig1frac))
print ">>> setup model background components: Chebychev polynomial plus exponential..."
a0 = RooRealVar("a0", "a0", 0.5, 0., 1.)
a1 = RooRealVar("a1", "a1", -0.2, 0., 1.)
bkg1 = RooChebychev("bkg1", "Background 1", x, RooArgList(a0, a1))
alpha = RooRealVar("alpha", "alpha", -1)
bkg2 = RooExponential("bkg2", "Background 2", x, alpha)
bkg1frac = RooRealVar("bkg1frac", "fraction of component 1 in background",
0.2, 0., 1.)
bkg = RooAddPdf("bkg", "Signal", RooArgList(bkg1, bkg2),
RooArgList(bkg1frac))
print ">>> sum signal and background component..."
bkgfrac = RooRealVar("bkgfrac", "fraction of background", 0.5, 0., 1.)
model = RooAddPdf("model", "g1+g2+a", RooArgList(bkg, sig),
RooArgList(bkgfrac))
print ">>> setup basic plot with data and full pdf..."
data = model.generate(RooArgSet(x), 1000) # RooDataSet
frame1 = x.frame(
Title("Component plotting of pdf=(sig1+sig2)+(bkg1+bkg2)")) # RooPlot
data.plotOn(frame1, Name("data"))
model.plotOn(frame1, Name("model"))
print ">>> clone frame for reuse..."
frame2 = frame1.Clone("frame2") # RooPlot
frame2.SetTitle("Get components with regular expressions")
print ">>> make omponent by object reference..."
# Plot multiple background components specified by object reference
# Note that specified components may occur at any level in object tree
# (e.g bkg is component of 'model' and 'sig2' is component 'sig')
argset1 = RooArgSet(bkg)
argset2 = RooArgSet(bkg2)
argset3 = RooArgSet(bkg, sig2)
model.plotOn(frame1, Components(argset1), LineColor(kRed), Name("bkgs1"))
model.plotOn(frame1, Components(argset2), LineStyle(kDashed),
LineColor(kRed), Name("bkg2"))
model.plotOn(frame1, Components(argset3), LineStyle(kDotted),
Name("bkgssig21"))
print "\n>>> make component by name / regular expressions..."
model.plotOn(frame2, Components("bkg"), LineColor(kAzure - 4),
Name("bkgs2")) # by name
model.plotOn(frame2, Components("bkg1,sig2"), LineColor(kAzure - 4),
LineStyle(kDotted), Name("bkg1sig22")) # by name
model.plotOn(frame2, Components("sig*"), LineColor(kAzure - 4),
LineStyle(kDashed), Name("sigs2")) # with regexp (wildcard *)
model.plotOn(frame2, Components("bkg1,sig*"), LineColor(kYellow),
LineStyle(kDashed),
Name("bkg1sigs2")) # with regexp (,) #Invisible()
print "\n>>> draw pfds and fits on canvas..."
canvas = TCanvas("canvas", "canvas", 100, 100, 1400, 600)
legend1 = TLegend(0.22, 0.85, 0.4, 0.65)
legend2 = TLegend(0.22, 0.85, 0.4, 0.65)
for legend in [legend1, legend2]:
legend.SetTextSize(0.032)
legend.SetBorderSize(0)
legend.SetFillStyle(0)
canvas.Divide(2)
canvas.cd(1)
gPad.SetLeftMargin(0.15)
gPad.SetRightMargin(0.02)
frame1.GetYaxis().SetLabelOffset(0.008)
frame1.GetYaxis().SetTitleOffset(1.6)
frame1.GetYaxis().SetTitleSize(0.045)
frame1.GetXaxis().SetTitleSize(0.045)
frame1.Draw()
legend1.AddEntry("data", "data", 'LEP')
legend1.AddEntry("model", "model", 'L')
legend1.AddEntry("bkgs1", "bkg", 'L')
legend1.AddEntry("bkg2", "bkg2", 'L')
legend1.AddEntry("bkgssig21", "bkg,sig2", 'L')
legend1.Draw()
canvas.cd(2)
gPad.SetLeftMargin(0.15)
gPad.SetRightMargin(0.02)
frame2.GetYaxis().SetLabelOffset(0.008)
frame2.GetYaxis().SetTitleOffset(1.6)
frame2.GetYaxis().SetTitleSize(0.045)
frame2.GetXaxis().SetTitleSize(0.045)
frame2.Draw()
legend2.AddEntry("data", "data", 'LEP')
legend2.AddEntry("model", "model", 'L')
legend2.AddEntry("bkgs2", "\"bkg\"", 'L')
legend2.AddEntry("bkg1sig22", "\"bkg1,sig2\"", 'L')
legend2.AddEntry("sigs2", "\"sig*\"", 'L')
legend2.AddEntry("bkg1sigs2", "\"bkg1,sig*\"", 'L')
legend2.Draw()
canvas.SaveAs("rooFit205.png")
def rooFit201():
print ">>> setup model component: gaussian signals and Chebychev polynomial background..."
x = RooRealVar("x","x",0,11)
mean = RooRealVar("mean","mean of gaussians",5)
sigma1 = RooRealVar("sigma1","width of gaussians",0.5)
sigma2 = RooRealVar("sigma2","width of gaussians",1)
sig1 = RooGaussian("sig1","Signal component 1",x,mean,sigma1)
sig2 = RooGaussian("sig2","Signal component 2",x,mean,sigma2)
a0 = RooRealVar("a0","a0",0.5,0.,1.)
a1 = RooRealVar("a1","a1",-0.2,0.,1.)
bkg = RooChebychev("bkg","Background",x,RooArgList(a0,a1))
print ">>>\n>>> METHOD 1 - Two RooAddPdfs"
print ">>> add signal components..."
# Sum the signal components into a composite signal p.d.f.
sig1frac = RooRealVar("sig1frac","fraction of component 1 in signal",0.8,0.,1.)
sig = RooAddPdf("sig","Signal",RooArgList(sig1,sig2),RooArgList(sig1frac))
print ">>> add signal and background..."
# Sum the composite signal and background
bkgfrac = RooRealVar("bkgfrac","fraction of background",0.5,0.,1.)
model = RooAddPdf("model","g1+g2+a",RooArgList(bkg,sig),RooArgList(bkgfrac))
print ">>> sample, fit and plot model..."
data = model.generate(RooArgSet(x),1000) # RooDataSet
model.fitTo(data)
frame1 = x.frame(Title("Example of composite pdf=(sig1+sig2)+bkg")) # RooPlot
data.plotOn(frame1,Binning(50),Name("data"))
model.plotOn(frame1,Name("model"))
# Overlay the background component of model with a dashed line
argset1 = RooArgSet(bkg)
model.plotOn(frame1,Components(argset1),LineWidth(2),Name("bkg")) #,LineStyle(kDashed)
# Overlay the background+sig2 components of model with a dotted line
argset2 = RooArgSet(bkg,sig2)
model.plotOn(frame1,Components(argset2),LineWidth(2),LineStyle(kDashed),LineColor(kAzure-4),Name("bkgsig2")) #,LineStyle(kDotted)
print "\n>>> structure of composite pdf:"
model.Print("t") # "tree" mode
print "\n>>> parameters:"
params = model.getVariables() # RooArgSet
params.Print("v")
params.Print()
print "\n>>> params.find(\"...\").getVal():"
print ">>> sigma1 = %.2f" % params.find("sigma1").getVal()
print ">>> sigma2 = %.2f" % params.find("sigma2").getVal()
print ">>> bkgfrac = %5.2f" % params.find("bkgfrac").getVal()
print ">>> sig1frac = %5.2f" % params.find("sig1frac").getVal()
print ">>>\n>>> components:"
comps = model.getComponents() # RooArgSet
sig = comps.find("sig") # RooAbsArg
sigVars = sig.getVariables() # RooArgSet
sigVars.Print()
print ">>>\n>>> METHOD 2 - One RooAddPdf with recursive fractions"
# Construct sum of models on one go using recursive fraction interpretations
# model2 = bkg + (sig1 + sig2)
model2 = RooAddPdf("model","g1+g2+a",RooArgList(bkg,sig1,sig2),RooArgList(bkgfrac,sig1frac),kTRUE)
# NB: Each coefficient is interpreted as the fraction of the
# left-hand component of the i-th recursive sum, i.e.
# sum4 = A + ( B + ( C + D ) )
# with fraction fA, fB and fC expands to
# sum4 = fA*A + (1-fA)*(fB*B + (1-fB)*(fC*C + (1-fC)*D))
print ">>> plot recursive addition model..."
argset3 = RooArgSet(bkg,sig2)
model2.plotOn(frame1,LineColor(kRed),LineStyle(kDashDotted),LineWidth(3),Name("model2"))
model2.plotOn(frame1,Components(argset3),LineColor(kMagenta),LineStyle(kDashDotted),LineWidth(3),Name("bkgsig22"))
model2.Print("t")
print ">>> draw pdfs and fits on canvas..."
canvas = TCanvas("canvas","canvas",100,100,800,600)
legend = TLegend(0.57,0.87,0.95,0.65)
legend.SetTextSize(0.030)
legend.SetBorderSize(0)
legend.SetFillStyle(0)
gPad.SetLeftMargin(0.14); gPad.SetRightMargin(0.02)
frame1.GetYaxis().SetLabelOffset(0.008)
frame1.GetYaxis().SetTitleOffset(1.4)
frame1.GetYaxis().SetTitleSize(0.045)
frame1.GetXaxis().SetTitleSize(0.045)
frame1.Draw()
legend.AddEntry("data", "data", 'LEP')
legend.AddEntry("model", "composite model", 'L')
legend.AddEntry("model2", "composite model (method 2)", 'L')
legend.AddEntry("bkg", "background only", 'L')
legend.AddEntry("bkgsig2", "background + signal 2", 'L')
legend.AddEntry("bkgsig22","background + signal 2 (method 2)",'L')
legend.Draw()
canvas.SaveAs("rooFit201.png")
def rooFit206():
print ">>> setup model signal components: gaussians..."
x = RooRealVar("x", "x", 0, 10)
mean = RooRealVar("mean", "mean of gaussians", 5)
sigma1 = RooRealVar("sigma1", "width of gaussians", 0.5)
sigma2 = RooRealVar("sigma2", "width of gaussians", 1)
sig1 = RooGaussian("sig1", "Signal component 1", x, mean, sigma1)
sig2 = RooGaussian("sig2", "Signal component 2", x, mean, sigma2)
sig1frac = RooRealVar("sig1frac", "fraction of component 1 in signal", 0.8,
0., 1.)
sig = RooAddPdf("sig", "Signal", RooArgList(sig1, sig2),
RooArgList(sig1frac))
print ">>> setup model background components: Chebychev polynomial plus exponential..."
a0 = RooRealVar("a0", "a0", 0.5, 0., 1.)
a1 = RooRealVar("a1", "a1", -0.2, 0., 1.)
bkg1 = RooChebychev("bkg1", "Background 1", x, RooArgList(a0, a1))
alpha = RooRealVar("alpha", "alpha", -1)
bkg2 = RooExponential("bkg2", "Background 2", x, alpha)
bkg1frac = RooRealVar("bkg1frac", "fraction of component 1 in background",
0.2, 0., 1.)
bkg = RooAddPdf("bkg", "Signal", RooArgList(bkg1, bkg2),
RooArgList(bkg1frac))
print ">>> sum signal and background component..."
bkgfrac = RooRealVar("bkgfrac", "fraction of background", 0.5, 0., 1.)
model = RooAddPdf("model", "g1+g2+a", RooArgList(bkg, sig),
RooArgList(bkgfrac))
print ">>> composite tree in ASCII:"
model.Print("t")
print "\n>>> write to txt file"
model.printCompactTree("", "rooFit206_asciitree.txt")
print ">>> draw composite tree graphically..."
# Print GraphViz DOT file with representation of tree
model.graphVizTree("rooFit206_model.dot")
# Make graphic output file with one of the GraphViz tools
# (freely available from www.graphviz.org)
#
# 'Top-to-bottom graph'
# unix> dot -Tgif -o rooFit206_model_dot.gif rooFit206_model.dot
#
# 'Spring-model graph'
# unix> fdp -Tgif -o rooFit206_model_fdp.gif rooFit206_model.dot
print ">>> plot everything..."
data = model.generate(RooArgSet(x), 1000) # RooDataSet
frame1 = x.frame(
Title("Component plotting of pdf=(sig1+sig2)+(bkg1+bkg2)")) # RooPlot
data.plotOn(frame1, Name("data"), Binning(40))
model.plotOn(frame1, Name("model"))
argset1 = RooArgSet(bkg)
argset2 = RooArgSet(bkg2)
argset3 = RooArgSet(bkg, sig2)
model.plotOn(frame1, Components(argset1), LineColor(kRed), Name("bkg"))
model.plotOn(frame1, Components(argset2), LineStyle(kDashed),
LineColor(kRed), Name("bkg2"))
model.plotOn(frame1, Components(argset3), LineStyle(kDotted),
Name("bkgsig2"))
print "\n>>> draw pfds and fits on canvas..."
canvas = TCanvas("canvas", "canvas", 100, 100, 800, 600)
legend = TLegend(0.22, 0.85, 0.4, 0.65)
legend.SetTextSize(0.032)
legend.SetBorderSize(0)
legend.SetFillStyle(0)
gPad.SetLeftMargin(0.15)
gPad.SetRightMargin(0.02)
frame1.GetYaxis().SetLabelOffset(0.008)
frame1.GetYaxis().SetTitleOffset(1.6)
frame1.GetYaxis().SetTitleSize(0.045)
frame1.GetXaxis().SetTitleSize(0.045)
frame1.Draw()
legend.AddEntry("data", "data", 'LEP')
legend.AddEntry("model", "model", 'L')
legend.AddEntry("bkg", "bkg", 'L')
legend.AddEntry("bkg2", "bkg2", 'L')
legend.AddEntry("bkgsig2", "bkg,sig2", 'L')
legend.Draw()
canvas.SaveAs("rooFit206.png")