print "Caught exception when trying to add values from %s to statistics collector" % filename
continue
#Serialization
if pickle_location != '':
for aminoacid in aminoacids:
statistics_collector_from_pdb.restype_av_scores[aminoacid].pickle_res_type_average_scores(pickle_location+aminoacid+'.txt')
#deserialize archived files
if archive_listfile != '' and pdb_listfile == '':
if add_arch == True:
for archive in archive_list:
f = file(archive, 'rb')
statistics_collector_from_pdb.add_archived_data( cPickle.load(f) )
f.close()
statistics_collector_from_archive = statistics_collector_from_pdb
elif add_arch ==False:
for archive in archive_list:
f = file(archive, 'rb')
statistics_collector_from_archive.add_archived_data( cPickle.load(f) )
f.close()
#Deserialization of one particular file (faster)
#aminoacids = ['GLU']
# = '/home/rahel/uni/wise1314/python/pdbstats/pickle11k/GLU.txt'
#statistics_collector_from_archive.add_archived_data(cPickle.load(file(archive, 'rb')))
for filename in all_file_names:
pe_instance = PoseEnergies()
pe_instance.loadFile(filename)
statistics_collector_from_pdb.add_pose_energies(pe_instance)
for aminoacid in aminoacids:
statistics_collector_from_pdb.restype_av_scores[aminoacid].pickle_res_type_average_scores('pickle-test/'+aminoacid+'.txt')
for aminoacid in aminoacids:
filename = 'pickle-test/'+ aminoacid + '.txt'
f = file(filename, 'rb')
loaded_object = cPickle.load(f)
statistics_collector_from_archive.add_archived_data( loaded_object)
#archived_res_type_average_scores[aminoacid] = loaded_object
f.close()
if not statistics_collector_from_pdb.calculate_averages_and_stddevs('GLU', 'faketerm1') == statistics_collector_from_archive.calculate_averages_and_stddevs('GLU', 'faketerm1'):
error3_seen = True
elif not statistics_collector_from_pdb.calculate_averages_and_stddevs('ASP', 'faketerm1') == statistics_collector_from_archive.calculate_averages_and_stddevs('ASP', 'faketerm1'):
error3_seen = True
elif not statistics_collector_from_pdb.calculate_averages_and_stddevs('MET', 'faketerm2') == statistics_collector_from_archive.calculate_averages_and_stddevs('MET', 'faketerm2'):
error3_seen = True
#elif not statistics_collector_from_pdb.calculate_averages_and_stddevs('ALA', 'faketerm4') == statistics_collector_from_archive.calculate_averages_and_stddevs('ALA', 'faketerm4'):
# error3_seen = True
