initial_conditions['S1'] = 2.0
initial_conditions['S2'] = 3.0
rr = RoadRunnerPy(_path=model_file)
rr.stepSize = step_size
rr.loadSBML(_externalPath=model_file)
# setting initial conditions - this has to be done after loadingSBML
for name, value in initial_conditions.iteritems():
try: # have to catch exceptions in case initial conditions contain "unsettable" entries such as reaction rate etc...
rr.model[name] = value
except:
pass
for i in range(20):
rr.timestep()
rr_from = rr
path_from = rr_from.path
initial_conditions_from = rr_from.model
rr_to = RoadRunnerPy(_path=path_from)
rr_to.stepSize = step_size
rr_to.loadSBML(_externalPath=path_from)
print
# setting initial conditions - this has to be done after loadingSBML
for name, value in initial_conditions_from.iteritems():
try:
initial_conditions['S1'] = 2.0
initial_conditions['S2'] = 3.0
rr = RoadRunnerPy(_path=model_file)
rr.stepSize = step_size
rr.loadSBML(_externalPath=model_file)
# setting initial conditions - this has to be done after loadingSBML
for name, value in initial_conditions.iteritems():
try: # have to catch exceptions in case initial conditions contain "unsettable" entries such as reaction rate etc...
rr.model[name] = value
except:
pass
for i in range(20):
rr.timestep()
rr_from = rr
path_from = rr_from.path
initial_conditions_from = rr_from.model
# from roadrunner import RoadRunner
rr_to_1 = RoadRunnerPy(sbml=rr_from.getCurrentSBML())
rr_to_1.stepSize = step_size
print
for i in range(20):
rr_from.timestep()
rr_to_1.timestep()
print 'STEP=',i
