def prepareQuery(cls, filename, width):
"""
prepare the query to be submitted
@return: query
@rtype: XSDataQuery
"""
query = XSDataQuery()
query.setRemoveItems(XSDataBoolean(0))
dirname, basename = os.path.split(filename)
prefix, ext = os.path.splitext(basename)
suffix = ext
bStarted = False
strNum = ""
for i, c in enumerate(prefix[-1::-1]):
if bStarted and not c.isdigit():
prefix = prefix[:-i]
break
if c.isdigit():
bStarted = True
strNum = c + strNum
else:
suffix = c + suffix
if strNum == "":
EDVerbose.WARNING("EDPluginControlMedianFilterImagev1_0.prepareQuery: No number in this filename !!! ")
query.setItem([XSDataString(filename)])
else:
num = int(strNum)
l = len(strNum)
minNum = num - width // 2
maxNum = minNum + width
query.setItem([XSDataString(os.path.join(dirname, prefix + "0" * (l - len(str(i))) + str(i) + suffix))
for i in range(minNum, maxNum)])
return query
def process(self, _edObject=None):
EDPluginControl.process(self)
self.DEBUG("EDPluginWaitMultiFile.process global time-out is set to: %s (default value)" % (self.getTimeOut()))
self.setTimeInit()
################################################################################
# Initialize the accumulator with the query
################################################################################
xsdiAccumulator = XSDataInputAccumulator()
xsdQuery = XSDataQuery()
xsdQuery.setRemoveItems(XSDataBoolean(1))
xsdQuery.setItem(self.listXsdStrings)
xsdiAccumulator.setQuery([xsdQuery])
edPluginAccumulator = self.loadPlugin(self.__strControlledPluginAccumulator)
edPluginAccumulator.setDataInput(xsdiAccumulator)
edPluginAccumulator.connectSUCCESS(self.doSuccessAccumulator)
edPluginAccumulator.connectFAILURE(self.doFailureAccumulator)
edPluginAccumulator.execute()
for oneXSDImage in self.listXsdFiles:
xsdiWaitFile = XSDataInputWaitFile()
xsdiWaitFile.setExpectedFile(oneXSDImage)
xsdiWaitFile.setExpectedSize(self.dataInput.expectedSize)
xsdiWaitFile.setTimeOut(self.dataInput.timeOut)
edPluginWaitFile = self.loadPlugin(self.__strControlledPluginWaitFile)
edPluginWaitFile.setDataInput(xsdiWaitFile)
edPluginWaitFile.connectSUCCESS(self.doSuccessWaitFile)
edPluginWaitFile.connectFAILURE(self.doFailureWaitFile)
edPluginWaitFile.execute()
def __init__(self):
"""
"""
EDPluginControl.__init__(self)
self.setXSDataInputClass(XSDataInputMedianFilterImage)
self.__strControlledPluginAccumulator = "EDPluginAccumulatorv1_0"
self.__strControlledPluginMedian = "EDPluginExecMedianFilterv1_0"
self.__edPluginExecAccumulator = None
self.__edPluginExecMedian = None
self.query = XSDataQuery()
self.xsdMedian = None
self.filename = None
self.outputImage = None
self.width = None
self.xsdOut = None
def prepareQuery(cls, filename, width):
"""
prepare the query to be submitted
@return: query
@rtype: XSDataQuery
"""
query = XSDataQuery()
query.setRemoveItems(XSDataBoolean(0))
dirname, basename = os.path.split(filename)
prefix, ext = os.path.splitext(basename)
suffix = ext
bStarted = False
strNum = ""
for i, c in enumerate(prefix[-1::-1]):
if bStarted and not c.isdigit():
prefix = prefix[:-i]
break
if c.isdigit():
bStarted = True
strNum = c + strNum
else:
suffix = c + suffix
if strNum == "":
EDVerbose.WARNING(
"EDPluginControlMedianFilterImagev1_0.prepareQuery: No number in this filename !!! "
)
query.setItem([XSDataString(filename)])
else:
num = int(strNum)
l = len(strNum)
minNum = num - width // 2
maxNum = minNum + width
query.setItem([
XSDataString(
os.path.join(
dirname,
prefix + "0" * (l - len(str(i))) + str(i) + suffix))
for i in range(minNum, maxNum)
])
return query
def process(self, _edObject=None):
EDPluginControl.process(self)
self.DEBUG("EDPluginControlAlignStackv1_0.process")
for iFrame in self.iFrames:
edPluginExecAccumulator = self.loadPlugin(
self.__strControlledPluginAccumulator)
queryRaw = XSDataQuery()
queryShift = XSDataQuery()
queryRaw.setRemoveItems(XSDataBoolean(False))
queryShift.setRemoveItems(XSDataBoolean(False))
xsdataAcc = XSDataInputAccumulator()
if (EDPluginControlAlignStackv1_0.__iRefFrame
== iFrame) or (self.bDoAlign == False):
EDPluginControlAlignStackv1_0.__dictAbsShift[iFrame] = (0.0,
0.0)
EDPluginControlAlignStackv1_0.__dictRelShift[iFrame] = (0.0,
0.0)
self.hdf5_offset(index=iFrame, offset=[0.0, 0.0])
edPluginExecShift = self.loadPlugin(
self.__strControlledPluginShift)
xsdata = XSDataInputShiftImage(
index=XSDataInteger(iFrame),
offset=[
XSDataDouble(i) for i in
EDPluginControlAlignStackv1_0.__dictAbsShift[iFrame]
],
inputImage=self.getFrameRef(iFrame),
outputImage=XSDataImageExt(
shared=XSDataString("Shifted-%06i" % iFrame)))
edPluginExecShift.setDataInput(xsdata)
edPluginExecShift.connectSUCCESS(self.doSuccessExecShiftImage)
edPluginExecShift.connectFAILURE(self.doFailureExecShiftImage)
self.queue.put(edPluginExecShift)
if (self.bDoAlign == False):
self.executeControlledPlugins()
return
elif EDPluginControlAlignStackv1_0.__iRefFrame < iFrame:
if self.bAlwaysMOvsRef:
queryRaw.setItem([
XSDataString(
"raw %04i" %
(EDPluginControlAlignStackv1_0.__iRefFrame)),
XSDataString("raw %04i" % iFrame)
])
xsdataAcc.setQuery([queryRaw])
else:
queryRaw.setItem([
XSDataString("raw %04i" % (iFrame - 1)),
XSDataString("raw %04i" % iFrame)
])
queryShift.setItem([
XSDataString("shift %04i" % i) for i in range(
EDPluginControlAlignStackv1_0.__iRefFrame +
1, iFrame + 1)
])
xsdataAcc.setQuery([queryRaw, queryShift])
elif EDPluginControlAlignStackv1_0.__iRefFrame > iFrame:
if self.bAlwaysMOvsRef:
queryRaw.setItem([
XSDataString("raw %04i" % iFrame),
XSDataString(
"raw %04i" %
(EDPluginControlAlignStackv1_0.__iRefFrame))
])
xsdataAcc.setQuery([queryRaw])
else:
queryRaw.setItem([
XSDataString("raw %04i" % (iFrame + 1)),
XSDataString("raw %04i" % iFrame)
])
queryShift.setItem([
XSDataString("shift %04i" % i) for i in range(
EDPluginControlAlignStackv1_0.__iRefFrame -
1, iFrame - 1, -1)
])
xsdataAcc.setQuery([queryRaw, queryShift])
if (EDPluginControlAlignStackv1_0.__iRefFrame == iFrame):
self.saveReferenceFrame(iFrame)
xsdataAcc.setItem([XSDataString("raw %04i" % iFrame)])
edPluginExecAccumulator.setDataInput(xsdataAcc)
edPluginExecAccumulator.connectSUCCESS(
self.doSuccessExecAccumultor)
edPluginExecAccumulator.connectFAILURE(
self.doFailureExecAccumulator)
self.queue.put(edPluginExecAccumulator)
self.executeControlledPlugins()
def process(self, _edObject=None):
EDPluginControl.process(self)
self.DEBUG("EDPluginControlAlignStackv1_0.process")
for iFrame in self.iFrames:
edPluginExecAccumulator = self.loadPlugin(self.__strControlledPluginAccumulator)
queryRaw = XSDataQuery()
queryShift = XSDataQuery()
queryRaw.setRemoveItems(XSDataBoolean(False))
queryShift.setRemoveItems(XSDataBoolean(False))
xsdataAcc = XSDataInputAccumulator()
if (EDPluginControlAlignStackv1_0.__iRefFrame == iFrame) or (self.bDoAlign == False) :
EDPluginControlAlignStackv1_0.__dictAbsShift[iFrame] = (0.0, 0.0)
EDPluginControlAlignStackv1_0.__dictRelShift[iFrame] = (0.0, 0.0)
self.hdf5_offset(index=iFrame, offset=[0.0, 0.0])
edPluginExecShift = self.loadPlugin(self.__strControlledPluginShift)
xsdata = XSDataInputShiftImage(index=XSDataInteger(iFrame),
offset=[XSDataDouble(i) for i in EDPluginControlAlignStackv1_0.__dictAbsShift[iFrame]],
inputImage=self.getFrameRef(iFrame),
outputImage=XSDataImageExt(shared=XSDataString("Shifted-%06i" % iFrame)))
edPluginExecShift.setDataInput(xsdata)
edPluginExecShift.connectSUCCESS(self.doSuccessExecShiftImage)
edPluginExecShift.connectFAILURE(self.doFailureExecShiftImage)
self.queue.put(edPluginExecShift)
if (self.bDoAlign == False):
self.executeControlledPlugins()
return
elif EDPluginControlAlignStackv1_0.__iRefFrame < iFrame:
if self.bAlwaysMOvsRef:
queryRaw.setItem([XSDataString("raw %04i" % (EDPluginControlAlignStackv1_0.__iRefFrame)), XSDataString("raw %04i" % iFrame)])
xsdataAcc.setQuery([queryRaw])
else:
queryRaw.setItem([XSDataString("raw %04i" % (iFrame - 1)), XSDataString("raw %04i" % iFrame)])
queryShift.setItem([XSDataString("shift %04i" % i) for i in range(EDPluginControlAlignStackv1_0.__iRefFrame + 1, iFrame + 1)])
xsdataAcc.setQuery([queryRaw, queryShift])
elif EDPluginControlAlignStackv1_0.__iRefFrame > iFrame:
if self.bAlwaysMOvsRef:
queryRaw.setItem([ XSDataString("raw %04i" % iFrame), XSDataString("raw %04i" % (EDPluginControlAlignStackv1_0.__iRefFrame))])
xsdataAcc.setQuery([queryRaw])
else:
queryRaw.setItem([XSDataString("raw %04i" % (iFrame + 1)), XSDataString("raw %04i" % iFrame)])
queryShift.setItem([XSDataString("shift %04i" % i) for i in range(EDPluginControlAlignStackv1_0.__iRefFrame - 1, iFrame - 1, -1)])
xsdataAcc.setQuery([queryRaw, queryShift])
if (EDPluginControlAlignStackv1_0.__iRefFrame == iFrame):
self.saveReferenceFrame(iFrame)
xsdataAcc.setItem([XSDataString("raw %04i" % iFrame)])
edPluginExecAccumulator.setDataInput(xsdataAcc)
edPluginExecAccumulator.connectSUCCESS(self.doSuccessExecAccumultor)
edPluginExecAccumulator.connectFAILURE(self.doFailureExecAccumulator)
self.queue.put(edPluginExecAccumulator)
self.executeControlledPlugins()
def process(self, _edObject=None):
EDPlugin.process(self)
self.DEBUG("EDPluginAccumulatorv1_0.process")
queriesToRemove = []
listXsdQuery = []
if not self.flush:
self.__semaphore.acquire()
for query in self.__queries:
present = True
for item in query:
if not item in self.__items:
present = False
break
if present is True:
queriesToRemove.append(query)
xsdQuery = XSDataQuery()
xsdQuery.setItem([XSDataString(item) for item in query])
if self.__queries[query] is True:
xsdQuery.setRemoveItems(XSDataBoolean(True))
for item in query:
self.__items.remove(item)
else:
xsdQuery.setRemoveItems(XSDataBoolean(False))
listXsdQuery.append(xsdQuery)
#Remove the query from the list of queries
for query in queriesToRemove:
self.__queries.pop(query)
self.__semaphore.release()
else:
xsdQuery = XSDataQuery()
self.__semaphore.acquire()
xsdQuery.setItem([XSDataString(item) for item in self.__items])
xsdQuery.setRemoveItems(XSDataBoolean(True))
self.__class__.__items = []
self.__semaphore.release()
listXsdQuery.append(xsdQuery)
self.xsDataResult.setQuery(listXsdQuery)
def process(self, _edObject=None):
EDPlugin.process(self)
self.DEBUG("EDPluginAccumulatorv1_0.process")
queriesToRemove = []
listXsdQuery = []
if not self.flush:
with self.__class__._semaphore:
for query in self._queries:
present = True
for item in query:
if not item in self._items:
present = False
break
if present is True:
queriesToRemove.append(query)
xsdQuery = XSDataQuery()
xsdQuery.setItem(
[XSDataString(item) for item in query])
if self._queries[query] is True:
xsdQuery.setRemoveItems(XSDataBoolean(True))
for item in query:
self._items.remove(item)
else:
xsdQuery.setRemoveItems(XSDataBoolean(False))
listXsdQuery.append(xsdQuery)
#Remove the query from the list of queries
for query in queriesToRemove:
self._queries.pop(query)
else:
xsdQuery = XSDataQuery()
with self.__class__._semaphore:
xsdQuery.setItem([XSDataString(item) for item in self._items])
xsdQuery.setRemoveItems(XSDataBoolean(True))
self.__class__._items = []
listXsdQuery.append(xsdQuery)
self.xsDataResult.setQuery(listXsdQuery)
