def doCharacterisationSuccess(self, _edPlugin=None):
EDVerbose.DEBUG("EDPluginControlCharForReorientationv2_0.doCharacterisationSuccess")
self.retrieveSuccessMessages(_edPlugin, "EDPluginControlCharacterisationv2_0.doCharacterisationSuccess")
self.xsDataResultCharacterisation = self.edPluginControlCharacterisation.getDataOutput()
# Check if kappa strategy is requested:
if self.strPluginStrategyName is not None:
self.edPluginControlStrategy = self.loadPlugin(self.strPluginStrategyName, \
"MXv2KappaStrategy")
xsDataInputStrategy = XSDataInputStrategy()
xsDataSolutionSelected = self.xsDataResultCharacterisation.getIndexingResult().getSelectedSolution()
xsDataInputStrategy.setCrystalRefined(xsDataSolutionSelected.getCrystal())
xsDataInputStrategy.setSample(self.xsDataResultCharacterisation.getDataCollection().getSample())
xsDataIntegrationSubWedgeResultList = self.xsDataResultCharacterisation.getIntegrationResult().getIntegrationSubWedgeResult()
xsDataInputStrategy.setBestFileContentDat(xsDataIntegrationSubWedgeResultList[0].getBestfileDat())
xsDataInputStrategy.setBestFileContentPar(xsDataIntegrationSubWedgeResultList[0].getBestfilePar())
xsDataInputStrategy.setExperimentalCondition(xsDataIntegrationSubWedgeResultList[0].getExperimentalConditionRefined())
xsDataInputStrategy.setDataCollection(self.mxv1InputCharacterisation.getDataCollection())
xsDataInputStrategy.setXdsBackgroundImage(self.xsDataResultCharacterisation.getXdsBackgroundImage())
for xsDataIntegrationSubWedgeResult in xsDataIntegrationSubWedgeResultList:
xsDataInputStrategy.addBestFileContentHKL(xsDataIntegrationSubWedgeResult.getBestfileHKL())
xsDataInputStrategy.setDiffractionPlan(self.xsDataResultCharacterisation.getDataCollection().getDiffractionPlan())
self.edPluginControlStrategy.setDataInput(xsDataInputStrategy, "mxv1InputStrategy")
self.edPluginControlStrategy.setDataInput(self.mxv2DataCollection, "mxv2DataCollection")
self.edPluginControlStrategy.setDataInput(self.xsDataResultCharacterisation.getIndexingResult(), "mxv1IndexingResult")
self.edPluginControlStrategy.connectSUCCESS(self.doStrategySuccess)
self.edPluginControlStrategy.connectFAILURE(self.doStrategyFailure)
self.executePluginSynchronous(self.edPluginControlStrategy)
def doSuccessIntegration(self, _edPlugin=None):
EDVerbose.DEBUG("EDPluginControlCharacterisationv1_3.doSuccessIntegration")
self.retrieveSuccessMessages(_edPlugin, "EDPluginControlCharacterisationv1_3.doSuccessIntegration")
# Wait for XDS plugin if necessary
self._edPluginControlXDSGenerateBackgroundImage.synchronize()
self.addStatusMessage("Integration successful.")
xsDataIntegrationOutput = self._edPluginControlIntegration.getDataOutput()
self._xsDataResultCharacterisation.setIntegrationResult(xsDataIntegrationOutput)
# Integration short summary
if self._edPluginControlIntegration.hasDataOutput("integrationShortSummary"):
self._strCharacterisationShortSummary += self._edPluginControlIntegration.getDataOutput("integrationShortSummary")[0].getValue()
#EDVerbose.DEBUG( self._xsDataExperimentCharacterisation.marshal() )
if self._bDoStrategyCalculation:
xsDataInputStrategy = XSDataInputStrategy()
xsDataSolutionSelected = self._xsDataResultCharacterisation.getIndexingResult().getSelectedSolution()
xsDataInputStrategy.setCrystalRefined(xsDataSolutionSelected.getCrystal())
xsDataInputStrategy.setSample(self._xsDataResultCharacterisation.getDataCollection().getSample())
xsDataIntegrationSubWedgeResultList = xsDataIntegrationOutput.getIntegrationSubWedgeResult()
xsDataInputStrategy.setBestFileContentDat(xsDataIntegrationSubWedgeResultList[0].getBestfileDat())
xsDataInputStrategy.setBestFileContentPar(xsDataIntegrationSubWedgeResultList[0].getBestfilePar())
xsDataInputStrategy.setExperimentalCondition(xsDataIntegrationSubWedgeResultList[0].getExperimentalConditionRefined())
xsDataInputStrategy.setXdsBackgroundImage(self._xsDataFileXdsBackgroundImage)
for xsDataIntegrationSubWedgeResult in xsDataIntegrationSubWedgeResultList:
xsDataInputStrategy.addBestFileContentHKL(xsDataIntegrationSubWedgeResult.getBestfileHKL())
xsDataInputStrategy.setDiffractionPlan(self._xsDataResultCharacterisation.getDataCollection().getDiffractionPlan())
self._edPluginControlStrategy.setDataInput(xsDataInputStrategy)
self.executePluginSynchronous(self._edPluginControlStrategy)
def doIntegrationToStrategyTransition(self, _edPlugin=None):
self.DEBUG("EDPluginControlCharacterisationv2_0.doIntegrationToStrategyTransition")
self.retrieveSuccessMessages(_edPlugin, "EDPluginControlCharacterisationv2_0.doIntegrationToStrategyTransition")
xsDataIntegrationOutput = self.edPluginIntegration.getDataOutput()
self.xsDataResultCharacterisation.setIntegrationResult(xsDataIntegrationOutput)
#self.DEBUG( self.xsDataExperimentCharacterisation.marshal() )
from XSDataMXv1 import XSDataInputStrategy
xsDataInputStrategyOLD = XSDataInputStrategy()
xsDataSolutionSelected = self.xsDataResultCharacterisation.getIndexingResult().getSelectedSolution()
xsDataInputStrategyOLD.setCrystalRefined(xsDataSolutionSelected.getCrystal())
xsDataInputStrategyOLD.setSample(self.xsDataResultCharacterisation.getDataCollection().getSample())
xsDataIntegrationSubWedgeResultList = xsDataIntegrationOutput.getIntegrationSubWedgeResult()
xsDataInputStrategyOLD.setBestFileContentDat(xsDataIntegrationSubWedgeResultList[0].getBestfileDat())
xsDataInputStrategyOLD.setBestFileContentPar(xsDataIntegrationSubWedgeResultList[0].getBestfilePar())
xsDataInputStrategyOLD.setExperimentalCondition(xsDataIntegrationSubWedgeResultList[0].getExperimentalConditionRefined())
for xsDataIntegrationSubWedgeResult in xsDataIntegrationSubWedgeResultList:
xsDataInputStrategyOLD.addBestFileContentHKL(xsDataIntegrationSubWedgeResult.getBestfileHKL())
xsDataInputStrategyOLD.setDiffractionPlan(self.xsDataResultCharacterisation.getDataCollection().getDiffractionPlan())
xsDataInputStrategyOLD.setXdsBackgroundImage(self.xsDataResultCharacterisation.getXdsBackgroundImage())
#print xsDataInputStrategy.marshal()
self.edPluginStrategy.setDataInput(xsDataInputStrategyOLD, "mxv1InputStrategy")
if self.hasDataInput("mxv2DataCollection"):
self.edPluginStrategy.setDataInput(self.getDataInput("mxv2DataCollection")[0], "mxv2DataCollection")
self.edPluginStrategy.setDataInput(self.xsDataResultCharacterisation.getIndexingResult(), "mxv1IndexingResult")
self.edPluginStrategy.executeSynchronous()
def doIntegrationToStrategyTransition(self, _edPlugin=None):
self.DEBUG("EDPluginControlCharacterisationv2_0.doIntegrationToStrategyTransition")
self.retrieveSuccessMessages(_edPlugin, "EDPluginControlCharacterisationv2_0.doIntegrationToStrategyTransition")
xsDataIntegrationOutput = self.edPluginIntegration.getDataOutput()
self.xsDataResultCharacterisation.setIntegrationResult(xsDataIntegrationOutput)
# self.DEBUG( self.xsDataExperimentCharacterisation.marshal() )
from XSDataMXv1 import XSDataInputStrategy
xsDataInputStrategyOLD = XSDataInputStrategy()
xsDataSolutionSelected = self.xsDataResultCharacterisation.getIndexingResult().getSelectedSolution()
xsDataInputStrategyOLD.setCrystalRefined(xsDataSolutionSelected.getCrystal())
xsDataInputStrategyOLD.setSample(self.xsDataResultCharacterisation.getDataCollection().getSample())
xsDataIntegrationSubWedgeResultList = xsDataIntegrationOutput.getIntegrationSubWedgeResult()
xsDataInputStrategyOLD.setBestFileContentDat(xsDataIntegrationSubWedgeResultList[0].getBestfileDat())
xsDataInputStrategyOLD.setBestFileContentPar(xsDataIntegrationSubWedgeResultList[0].getBestfilePar())
xsDataInputStrategyOLD.setExperimentalCondition(xsDataIntegrationSubWedgeResultList[0].getExperimentalConditionRefined())
for xsDataIntegrationSubWedgeResult in xsDataIntegrationSubWedgeResultList:
xsDataInputStrategyOLD.addBestFileContentHKL(xsDataIntegrationSubWedgeResult.getBestfileHKL())
xsDataInputStrategyOLD.setDiffractionPlan(self.xsDataResultCharacterisation.getDataCollection().getDiffractionPlan())
xsDataInputStrategyOLD.setXdsBackgroundImage(self.xsDataResultCharacterisation.getXdsBackgroundImage())
# print xsDataInputStrategy.marshal()
self.edPluginStrategy.setDataInput(xsDataInputStrategyOLD, "mxv1InputStrategy")
if self.hasDataInput("mxv2DataCollection"):
self.edPluginStrategy.setDataInput(self.getDataInput("mxv2DataCollection")[0], "mxv2DataCollection")
self.edPluginStrategy.setDataInput(self.xsDataResultCharacterisation.getIndexingResult(), "mxv1IndexingResult")
self.edPluginStrategy.executeSynchronous()
def doSuccessIntegration(self, _edPlugin=None):
self.DEBUG("EDPluginControlCharacterisationv1_4.doSuccessIntegration")
self.retrieveSuccessMessages(
self._edPluginControlIntegration,
"EDPluginControlCharacterisationv1_4.doSuccessIntegration")
# Wait for XDS plugin if necessary
self._edPluginControlXDSGenerateBackgroundImage.synchronize()
self.addStatusMessage("Integration successful.")
xsDataIntegrationOutput = self._edPluginControlIntegration.getDataOutput(
)
self._xsDataResultCharacterisation.setIntegrationResult(
xsDataIntegrationOutput)
# Integration short summary
if self._edPluginControlIntegration.hasDataOutput(
"integrationShortSummary"):
integrationShortSummary = self._edPluginControlIntegration.getDataOutput(
"integrationShortSummary")[0].getValue()
self._strCharacterisationShortSummary += integrationShortSummary
self.sendMessageToMXCuBE(integrationShortSummary)
# self.DEBUG( self._xsDataExperimentCharacterisation.marshal() )
if self._bDoStrategyCalculation:
xsDataInputStrategy = XSDataInputStrategy()
xsDataSolutionSelected = self._xsDataResultCharacterisation.getIndexingResult(
).getSelectedSolution()
xsDataInputStrategy.setCrystalRefined(
xsDataSolutionSelected.getCrystal())
xsDataInputStrategy.setSample(self._xsDataResultCharacterisation.
getDataCollection().getSample())
xsDataIntegrationSubWedgeResultList = xsDataIntegrationOutput.getIntegrationSubWedgeResult(
)
bFirst = True
for xsDataIntegrationSubWedgeResult in xsDataIntegrationSubWedgeResultList:
if xsDataIntegrationSubWedgeResult.getBestfileHKL(
) is not None:
xsDataInputStrategy.addBestFileContentHKL(
xsDataIntegrationSubWedgeResult.getBestfileHKL())
if bFirst:
xsDataInputStrategy.setBestFileContentDat(
xsDataIntegrationSubWedgeResult.getBestfileDat())
xsDataInputStrategy.setBestFileContentPar(
xsDataIntegrationSubWedgeResult.getBestfilePar())
xsDataInputStrategy.setExperimentalCondition(
xsDataIntegrationSubWedgeResult.
getExperimentalConditionRefined())
bFirst = False
xsDataInputStrategy.setXdsBackgroundImage(
self._xsDataFileXdsBackgroundImage)
xsDataInputStrategy.setDataCollection(self._xsDataCollection)
xsDataInputStrategy.setDiffractionPlan(
self._xsDataResultCharacterisation.getDataCollection(
).getDiffractionPlan())
self._edPluginControlStrategy.setDataInput(xsDataInputStrategy)
self.executePluginSynchronous(self._edPluginControlStrategy)
def doCharacterisationSuccess(self, _edPlugin=None):
EDVerbose.DEBUG(
"EDPluginControlCharForReorientationv2_0.doCharacterisationSuccess"
)
self.retrieveSuccessMessages(
_edPlugin,
"EDPluginControlCharacterisationv2_0.doCharacterisationSuccess")
self.xsDataResultCharacterisation = self.edPluginControlCharacterisation.getDataOutput(
)
# Check if kappa strategy is requested:
if self.strPluginStrategyName is not None:
self.edPluginControlStrategy = self.loadPlugin(self.strPluginStrategyName, \
"MXv2KappaStrategy")
xsDataInputStrategy = XSDataInputStrategy()
xsDataSolutionSelected = self.xsDataResultCharacterisation.getIndexingResult(
).getSelectedSolution()
xsDataInputStrategy.setCrystalRefined(
xsDataSolutionSelected.getCrystal())
xsDataInputStrategy.setSample(self.xsDataResultCharacterisation.
getDataCollection().getSample())
xsDataIntegrationSubWedgeResultList = self.xsDataResultCharacterisation.getIntegrationResult(
).getIntegrationSubWedgeResult()
xsDataInputStrategy.setBestFileContentDat(
xsDataIntegrationSubWedgeResultList[0].getBestfileDat())
xsDataInputStrategy.setBestFileContentPar(
xsDataIntegrationSubWedgeResultList[0].getBestfilePar())
xsDataInputStrategy.setExperimentalCondition(
xsDataIntegrationSubWedgeResultList[0].
getExperimentalConditionRefined())
xsDataInputStrategy.setDataCollection(
self.mxv1InputCharacterisation.getDataCollection())
xsDataInputStrategy.setXdsBackgroundImage(
self.xsDataResultCharacterisation.getXdsBackgroundImage())
for xsDataIntegrationSubWedgeResult in xsDataIntegrationSubWedgeResultList:
xsDataInputStrategy.addBestFileContentHKL(
xsDataIntegrationSubWedgeResult.getBestfileHKL())
xsDataInputStrategy.setDiffractionPlan(
self.xsDataResultCharacterisation.getDataCollection(
).getDiffractionPlan())
self.edPluginControlStrategy.setDataInput(xsDataInputStrategy,
"mxv1InputStrategy")
self.edPluginControlStrategy.setDataInput(self.mxv2DataCollection,
"mxv2DataCollection")
self.edPluginControlStrategy.setDataInput(
self.xsDataResultCharacterisation.getIndexingResult(),
"mxv1IndexingResult")
self.edPluginControlStrategy.connectSUCCESS(self.doStrategySuccess)
self.edPluginControlStrategy.connectFAILURE(self.doStrategyFailure)
self.executePluginSynchronous(self.edPluginControlStrategy)
