def setup(self):
# Instantiate and connect widgets ...
# Collapsible button
dummyCollapsibleButton = ctk.ctkCollapsibleButton()
dummyCollapsibleButton.text = "IO"
self.layout.addWidget(dummyCollapsibleButton)
# Layout within the dummy collapsible button
dummyFormLayout = qt.QFormLayout(dummyCollapsibleButton)
# Input label node
label = qt.QLabel('Input label: ')
self.segmentationSelector = slicer.qMRMLNodeComboBox()
self.segmentationSelector.nodeTypes = ['vtkMRMLScalarVolumeNode']
self.segmentationSelector.setMRMLScene(slicer.mrmlScene)
self.segmentationSelector.addEnabled = 0
self.segmentationSelector.noneEnabled = 1
self.segmentationSelector.removeEnabled = 0
self.segmentationSelector.showHidden = 0
self.segmentationSelector.showChildNodeTypes = 0
self.segmentationSelector.selectNodeUponCreation = 1
self.segmentationSelector.addAttribute('vtkMRMLScalarVolumeNode','LabelMap',1)
self.segmentationSelector.connect('currentNodeChanged(vtkMRMLNode*)',self.onInputChanged)
dummyFormLayout.addRow(label, self.segmentationSelector)
# Input volume node
label = qt.QLabel('Input volume: ')
self.volumeSelector = slicer.qMRMLNodeComboBox()
self.volumeSelector.nodeTypes = ['vtkMRMLScalarVolumeNode']
self.volumeSelector.setMRMLScene(slicer.mrmlScene)
self.volumeSelector.addEnabled = 0
self.volumeSelector.noneEnabled = 1
self.volumeSelector.removeEnabled = 0
self.volumeSelector.showHidden = 0
self.volumeSelector.showChildNodeTypes = 0
self.volumeSelector.selectNodeUponCreation = 0
self.volumeSelector.addAttribute('vtkMRMLScalarVolumeNode','DICOM.instanceUIDs')
self.volumeSelector.connect('currentNodeChanged(vtkMRMLNode*)',self.onInputChanged)
dummyFormLayout.addRow(label, self.volumeSelector)
# Buttons to save/load report using AIM XML serialization
label = qt.QLabel('Export folder')
self.__exportFolderPicker = ctk.ctkDirectoryButton()
self.__exportFolderPicker.connect('directoryChanged(const QString&)', self.onOutputDirChanged)
self.exportButton = qt.QPushButton('Export')
dummyFormLayout.addRow(label, self.__exportFolderPicker)
dummyFormLayout.addRow(self.exportButton)
self.exportButton.connect('clicked()', self.onLabelExport)
self.exportButton.enabled = 1
# Input hint
self.__helpLabel = qt.QLabel('Select a label associated with a DICOM volume')
dummyFormLayout.addRow(self.__helpLabel)
# Add vertical spacer
self.layout.addStretch(1)
self.outputDir = self.__exportFolderPicker.directory
def setupsubmissionUI(self):
self.dataDirButton = ctk.ctkDirectoryButton()
self.submissionGroupBoxLayout.addWidget(qt.QLabel("Data directory:") )
self.submissionGroupBoxLayout.addWidget(self.dataDirButton)
self.SaveButton = qt.QPushButton("Save")
self.submissionGroupBoxLayout.addWidget(self.SaveButton)
self.SaveButton.connect('clicked()', self.onSaveButtonClicked)
self.WebSaveButton = qt.QPushButton("Submit to web")
self.submissionGroupBoxLayout.addWidget(self.WebSaveButton)
self.WebSaveButton.connect('clicked()', self.onWebSaveButtonClicked)
def setup(self):
self.developerMode = True
ScriptedLoadableModuleWidget.setup(self)
parametersCollapsibleButton = ctk.ctkCollapsibleButton()
parametersCollapsibleButton.text = "Parameters"
self.layout.addWidget(parametersCollapsibleButton)
parametersFormLayout = qt.QFormLayout(parametersCollapsibleButton)
self.inputDirButton = ctk.ctkDirectoryButton()
parametersFormLayout.addRow("Input directory:",self.inputDirButton)
self.outputDirButton = ctk.ctkDirectoryButton()
parametersFormLayout.addRow("Output directory:",self.outputDirButton)
applyButton = qt.QPushButton('Run')
parametersFormLayout.addRow(applyButton)
applyButton.connect('clicked()',self.onRunClicked)
def setup( self ):
# settings
settingsButton = ctk.ctkCollapsibleButton()
settingsButton.text = "Settings"
settingsButton.collapsed = False
self.parent.layout().addWidget( settingsButton )
settingsLayout = qt.QFormLayout( settingsButton )
self.__dirButton = ctk.ctkDirectoryButton()
settingsLayout.addRow( "Output directory:", self.__dirButton )
self.__viewCheckbox = qt.QCheckBox()
self.__viewCheckbox.setChecked( True )
settingsLayout.addRow( "View after export:", self.__viewCheckbox )
# advanced
advancedButton = ctk.ctkCollapsibleButton()
advancedButton.text = "Advanced"
advancedButton.collapsed = True
self.parent.layout().addWidget( advancedButton )
advancedLayout = qt.QFormLayout( advancedButton )
self.__copyCheckbox = qt.QCheckBox()
self.__copyCheckbox.setChecked( True )
advancedLayout.addRow( "Copy models to output directory:", self.__copyCheckbox )
self.__captionCombobox = qt.QComboBox()
self.__captionCombobox.addItems( ['None', 'Model name', 'Hierarchy name'] )
self.__captionCombobox.currentIndex = 1 # Model name by default
advancedLayout.addRow( "Set captions from:", self.__captionCombobox )
self.__serverCheckbox = qt.QCheckBox()
self.__serverCheckbox.setChecked( useWebserver )
if not useWebserver:
self.__serverCheckbox.setEnabled( False )
advancedLayout.addRow( "Run internal web server:", self.__serverCheckbox )
# Apply button
self.__exportButton = qt.QPushButton( "Export to WebGL" )
self.__exportButton.toolTip = "Export to WebGL using XTK."
self.__exportButton.enabled = True
self.parent.layout().addWidget( self.__exportButton )
# Add vertical spacer
self.parent.layout().addStretch( 1 )
# connections
self.__exportButton.connect( 'clicked()', self.onExport )
def setup(self):
ScriptedLoadableModuleWidget.setup(self)
# Instantiate and connect widgets ...
#
# Parameters Area
#
parametersCollapsibleButton = ctk.ctkCollapsibleButton()
parametersCollapsibleButton.text = "Patient Information"
self.layout.addWidget(parametersCollapsibleButton)
# Layout within the dummy collapsible button
parametersFormLayout = qt.QFormLayout(parametersCollapsibleButton)
patientNumberMethodFrame = qt.QFrame(self.parent)
parametersFormLayout.addRow(patientNumberMethodFrame)
patientNumberMethodFormLayout = qt.QFormLayout(patientNumberMethodFrame)
dataFrame = qt.QFrame(self.parent)
dataFrameLayout = qt.QHBoxLayout()
dataFrame.setLayout(dataFrameLayout)
dataLabel = qt.QLabel('Data Directory:', dataFrame)
dataLabel.setToolTip('Data directory containing "Patient##"')
dataFrameLayout.addWidget(dataLabel)
self.DataDirectoryButton = ctk.ctkDirectoryButton(self.parent)
dataFrameLayout.addWidget(self.DataDirectoryButton)
patientNumberMethodFormLayout.addRow(dataFrame)
patientNumberIterationsFrame, self.PatientNumberIterationsSpinBox = \
numericInputFrame(self.parent, "Patient Number:" , "Tooltip", 59, 110,
1, 0)
patientNumberMethodFormLayout.addRow(patientNumberIterationsFrame)
# Apply Button
#
self.applyButton = qt.QPushButton("Apply")
self.applyButton.toolTip = "Run the algorithm."
self.applyButton.enabled = True
parametersFormLayout.addRow(self.applyButton)
# connections
self.applyButton.connect('clicked(bool)', self.onApplyButton)
# Add vertical spacer
self.layout.addStretch(1)
# Refresh Apply button state
self.onSelect()
def setup(self):
ScriptedLoadableModuleWidget.setup(self)
print "-------Mesh Statistic Widget Setup-------"
self.moduleName = 'MeshStatistics'
scriptedModulesPath = eval('slicer.modules.%s.path' % self.moduleName.lower())
scriptedModulesPath = os.path.dirname(scriptedModulesPath)
libPath = os.path.join(scriptedModulesPath)
sys.path.insert(0, libPath)
# import the external library that contain the functions comon to all DCBIA modules
import ShapeQuantifierCore
reload(ShapeQuantifierCore)
# -------------------------------------------------------------------------------------
self.ShapeQuantifierCore = ShapeQuantifierCore.ShapeQuantifierCore(interface = self)
self.logic = MeshStatisticsLogic(self, ShapeQuantifierCore)
self.modelList = list()
self.fieldList = list()
self.ROIList = list()
self.ROIDict = dict() # Key = Name of ROI
# Value = Dictionary of Fields (key = Name of Field
# Value = dictionary of shapes
# key = name of shapes
# value = Statistics store()
# ---------------------------------------------------------------- #
# ---------------- Definition of the UI interface ---------------- #
# ---------------------------------------------------------------- #
# ------------ Loading of the .ui file ---------- #
loader = qt.QUiLoader()
path = os.path.join(scriptedModulesPath, 'Resources', 'UI', '%s.ui' %self.moduleName)
qfile = qt.QFile(path)
qfile.open(qt.QFile.ReadOnly)
widget = loader.load(qfile, self.parent)
self.layout = self.parent.layout()
self.widget = widget
self.layout.addWidget(widget)
# ------------------------------------------------------------------------------------
# SHAPES INPUT
# ------------------------------------------------------------------------------------
self.inputComboBox = self.ShapeQuantifierCore.get("inputComboBox")
self.inputComboBox.setMRMLScene(slicer.mrmlScene)
self.inputComboBox.connect('checkedNodesChanged()', self.onInputComboBoxCheckedNodesChanged)
# ------------------------------------------------------------------------------------
# ROI TABLE
# ------------------------------------------------------------------------------------
self.ROIComboBox = self.ShapeQuantifierCore.get("ROIComboBox")
self.ROICheckBox = self.ShapeQuantifierCore.get("ROICheckBox")
self.ROICheckBox.connect('stateChanged(int)', self.onROICheckBoxStateChanged)
# ------------------------------------------------------------------------------------
# FIELD TABLE
# ------------------------------------------------------------------------------------
self.tableField = self.ShapeQuantifierCore.get("tableField")
self.tableField.setColumnCount(2)
self.tableField.setMinimumHeight(250)
self.tableField.setHorizontalHeaderLabels([' ', ' Field Name '])
self.tableField.setColumnWidth(0, 20)
self.tableField.setColumnWidth(1, 260)
self.tableField.setSizePolicy(qt.QSizePolicy().Expanding, qt.QSizePolicy().Expanding)
# ------------------------------------------------------------------------------------
# RUN
# ------------------------------------------------------------------------------------
self.runButton = self.ShapeQuantifierCore.get("runButton")
self.runButton.connect('clicked()', self.onRunButton)
# ------------------------------------------------------------------------------------
# Statistics Table - Export
# ------------------------------------------------------------------------------------
self.mainLayout = self.ShapeQuantifierCore.get("mainLayout")
self.tabROI = qt.QTabWidget()
self.tabROI.setTabPosition(0)
self.tabROI.adjustSize()
# ---------------------------- Directory - Export Button -----------------------------
self.directoryExport = ctk.ctkDirectoryButton()
self.exportCheckBox = qt.QCheckBox('Separate Files')
self.exportCheckBox.setChecked(True)
self.exportButton = qt.QPushButton(' Export ')
self.exportButton.enabled = True
self.exportPointValueCheckBox = qt.QCheckBox('Export Value on Each Point')
self.exportLayout = qt.QVBoxLayout()
self.directoryAndExportLayout = qt.QHBoxLayout()
self.directoryAndExportLayout.addWidget(self.directoryExport)
self.directoryAndExportLayout.addWidget(self.exportCheckBox)
self.directoryAndExportLayout.addWidget(self.exportPointValueCheckBox)
self.exportButtonsLayout = qt.QHBoxLayout()
self.exportButtonsLayout.addWidget(self.exportButton)
self.exportLayout.addLayout(self.directoryAndExportLayout)
self.exportLayout.addLayout(self.exportButtonsLayout)
self.layout.addStretch(1)
self.logic.updateInterface(self.tableField, self.ROIComboBox, self.ROIList, self.modelList, self.mainLayout)
# ------------------------------------------------------------------------------------
# OBSERVERS
# ------------------------------------------------------------------------------------
slicer.mrmlScene.AddObserver(slicer.mrmlScene.EndCloseEvent, self.onCloseScene)
def setup(self):
ScriptedLoadableModuleWidget.setup(self)
print "-------Mesh Statistic Widget Setup-------"
self.moduleName = 'MeshStatistics'
scriptedModulesPath = eval('slicer.modules.%s.path' %
self.moduleName.lower())
scriptedModulesPath = os.path.dirname(scriptedModulesPath)
libPath = os.path.join(scriptedModulesPath)
sys.path.insert(0, libPath)
# import the external library that contain the functions comon to all DCBIA modules
import ShapeQuantifierCore
reload(ShapeQuantifierCore)
# -------------------------------------------------------------------------------------
self.ShapeQuantifierCore = ShapeQuantifierCore.ShapeQuantifierCore(
interface=self)
self.logic = MeshStatisticsLogic(self, ShapeQuantifierCore)
self.modelList = list()
self.fieldList = list()
self.ROIList = list()
self.ROIDict = dict() # Key = Name of ROI
# Value = Dictionary of Fields (key = Name of Field
# Value = dictionary of shapes
# key = name of shapes
# value = Statistics store()
# ---------------------------------------------------------------- #
# ---------------- Definition of the UI interface ---------------- #
# ---------------------------------------------------------------- #
# ------------ Loading of the .ui file ---------- #
loader = qt.QUiLoader()
path = os.path.join(scriptedModulesPath, 'Resources', 'UI',
'%s.ui' % self.moduleName)
qfile = qt.QFile(path)
qfile.open(qt.QFile.ReadOnly)
widget = loader.load(qfile, self.parent)
self.layout = self.parent.layout()
self.widget = widget
self.layout.addWidget(widget)
# ------------------------------------------------------------------------------------
# SHAPES INPUT
# ------------------------------------------------------------------------------------
self.inputComboBox = self.ShapeQuantifierCore.get("inputComboBox")
self.inputComboBox.setMRMLScene(slicer.mrmlScene)
self.inputComboBox.connect('checkedNodesChanged()',
self.onInputComboBoxCheckedNodesChanged)
# ------------------------------------------------------------------------------------
# ROI TABLE
# ------------------------------------------------------------------------------------
self.ROIComboBox = self.ShapeQuantifierCore.get("ROIComboBox")
self.ROICheckBox = self.ShapeQuantifierCore.get("ROICheckBox")
self.ROICheckBox.connect('stateChanged(int)',
self.onROICheckBoxStateChanged)
# ------------------------------------------------------------------------------------
# FIELD TABLE
# ------------------------------------------------------------------------------------
self.tableField = self.ShapeQuantifierCore.get("tableField")
self.tableField.setColumnCount(2)
self.tableField.setMinimumHeight(250)
self.tableField.setHorizontalHeaderLabels([' ', ' Field Name '])
self.tableField.setColumnWidth(0, 20)
self.tableField.setColumnWidth(1, 260)
self.tableField.setSizePolicy(qt.QSizePolicy().Expanding,
qt.QSizePolicy().Expanding)
# ------------------------------------------------------------------------------------
# RUN
# ------------------------------------------------------------------------------------
self.runButton = self.ShapeQuantifierCore.get("runButton")
self.runButton.connect('clicked()', self.onRunButton)
# ------------------------------------------------------------------------------------
# Statistics Table - Export
# ------------------------------------------------------------------------------------
self.mainLayout = self.ShapeQuantifierCore.get("mainLayout")
self.tabROI = qt.QTabWidget()
self.tabROI.setTabPosition(0)
self.tabROI.adjustSize()
# ---------------------------- Directory - Export Button -----------------------------
self.directoryExport = ctk.ctkDirectoryButton()
self.exportCheckBox = qt.QCheckBox('Separate Files')
self.exportCheckBox.setChecked(True)
self.exportButton = qt.QPushButton(' Export ')
self.exportButton.enabled = True
self.exportPointValueCheckBox = qt.QCheckBox(
'Export Value on Each Point')
self.exportLayout = qt.QVBoxLayout()
self.directoryAndExportLayout = qt.QHBoxLayout()
self.directoryAndExportLayout.addWidget(self.directoryExport)
self.directoryAndExportLayout.addWidget(self.exportCheckBox)
self.directoryAndExportLayout.addWidget(self.exportPointValueCheckBox)
self.exportButtonsLayout = qt.QHBoxLayout()
self.exportButtonsLayout.addWidget(self.exportButton)
self.exportLayout.addLayout(self.directoryAndExportLayout)
self.exportLayout.addLayout(self.exportButtonsLayout)
self.layout.addStretch(1)
self.logic.updateInterface(self.tableField, self.ROIComboBox,
self.ROIList, self.modelList,
self.mainLayout)
# ------------------------------------------------------------------------------------
# OBSERVERS
# ------------------------------------------------------------------------------------
slicer.mrmlScene.AddObserver(slicer.mrmlScene.EndCloseEvent,
self.onCloseScene)
def setup(self):
ScriptedLoadableModuleWidget.setup(self)
# Instantiate and connect widgets ...
if not NUMPY_AVAILABLE:
label = qt.QLabel('The module is not available due to missing Numpy package.')
self.layout.addWidget(label)
label = qt.QLabel('You can seek help by contacting 3D Slicer user list: [email protected]')
self.layout.addWidget(label)
# Add vertical spacer
self.layout.addStretch(1)
return
# Collapsible button
dummyCollapsibleButton = ctk.ctkCollapsibleButton()
dummyCollapsibleButton.text = "Basic settings"
self.layout.addWidget(dummyCollapsibleButton)
dummyFormLayout = qt.QFormLayout(dummyCollapsibleButton)
# add input directory selector
label = qt.QLabel('Input directory:')
self.__fDialog = ctk.ctkDirectoryButton()
self.__fDialog.caption = 'Input directory'
dummyFormLayout.addRow(label, self.__fDialog)
label = qt.QLabel('Output node:')
self.__mvSelector = slicer.qMRMLNodeComboBox()
self.__mvSelector.nodeTypes = ['vtkMRMLMultiVolumeNode']
self.__mvSelector.setMRMLScene(slicer.mrmlScene)
self.__mvSelector.connect('mrmlSceneChanged(vtkMRMLScene*)', self.onMRMLSceneChanged)
self.__mvSelector.addEnabled = 1
dummyFormLayout.addRow(label, self.__mvSelector)
# Collapsible button
dummyCollapsibleButton = ctk.ctkCollapsibleButton()
dummyCollapsibleButton.text = "Advanced settings"
dummyCollapsibleButton.collapsed = 1
self.layout.addWidget(dummyCollapsibleButton)
dummyFormLayout = qt.QFormLayout(dummyCollapsibleButton)
self.__advancedFrame = dummyCollapsibleButton
label = qt.QLabel('Frame identifying DICOM tag (if known):')
self.__dicomTag = qt.QLineEdit()
self.__dicomTag.text = 'NA'
dummyFormLayout.addRow(label, self.__dicomTag)
label = qt.QLabel('Frame identifying units:')
self.__veLabel = qt.QLineEdit()
self.__veLabel.text = 'na'
dummyFormLayout.addRow(label, self.__veLabel)
label = qt.QLabel('Initial value:')
self.__veInitial = qt.QDoubleSpinBox()
self.__veInitial.value = 0
dummyFormLayout.addRow(label, self.__veInitial)
label = qt.QLabel('Step:')
self.__veStep = qt.QDoubleSpinBox()
self.__veStep.value = 1
dummyFormLayout.addRow(label, self.__veStep)
label = qt.QLabel('EchoTime:')
self.__te = qt.QDoubleSpinBox()
self.__te.value = 1
dummyFormLayout.addRow(label, self.__te)
label = qt.QLabel('RepetitionTime:')
self.__tr = qt.QDoubleSpinBox()
self.__tr.value = 1
dummyFormLayout.addRow(label, self.__tr)
label = qt.QLabel('FlipAngle:')
self.__fa = qt.QDoubleSpinBox()
self.__fa.value = 1
dummyFormLayout.addRow(label, self.__fa)
importButton = qt.QPushButton("Import")
importButton.toolTip = "Import the contents of the directory as a MultiVolume"
self.layout.addWidget(importButton)
importButton.connect('clicked(bool)', self.onImportButtonClicked)
self.__status = qt.QLabel('Status: Idle')
self.layout.addWidget(self.__status)
# Add vertical spacer
self.layout.addStretch(1)
def setup(self):
ScriptedLoadableModuleWidget.setup(self)
print("-------Mesh Statistic Widget Setup-------")
# -------------------------------------------------------------------------------------
self.modelList = list()
self.fieldList = list()
self.ROIList = list()
self.ROIDict = dict() # Key = Name of ROI
# Value = Dictionary of Fields (key = Name of Field
# Value = dictionary of shapes
# key = name of shapes
# value = Statistics store()
self.logic = MeshStatisticsLogic(self)
# ---------------------------------------------------------------- #
# ---------------- Definition of the UI interface ---------------- #
# ---------------------------------------------------------------- #
# ------------ Loading of the .ui file ---------- #
modulePath = os.path.dirname(slicer.util.modulePath(self.moduleName))
path = os.path.join(modulePath, 'Resources', 'UI', '%s.ui' % self.moduleName)
self.layout = self.parent.layout()
self.widget = slicer.util.loadUI(path)
self.layout.addWidget(self.widget)
# ------------------------------------------------------------------------------------
# SHAPES INPUT
# ------------------------------------------------------------------------------------
self.inputComboBox = self.logic.get("inputComboBox")
self.inputComboBox.setMRMLScene(slicer.mrmlScene)
self.inputComboBox.connect('checkedNodesChanged()', self.onInputComboBoxCheckedNodesChanged)
# ------------------------------------------------------------------------------------
# ROI TABLE
# ------------------------------------------------------------------------------------
self.ROIComboBox = self.logic.get("ROIComboBox")
self.ROICheckBox = self.logic.get("ROICheckBox")
self.ROICheckBox.connect('stateChanged(int)', self.onROICheckBoxStateChanged)
# ------------------------------------------------------------------------------------
# FIELD TABLE
# ------------------------------------------------------------------------------------
self.tableField = self.logic.get("tableField")
self.tableField.setColumnCount(2)
self.tableField.setMinimumHeight(250)
self.tableField.setHorizontalHeaderLabels([' ', ' Field Name '])
self.tableField.setColumnWidth(0, 20)
self.tableField.setColumnWidth(1, 260)
self.tableField.setSizePolicy(qt.QSizePolicy().Expanding, qt.QSizePolicy().Expanding)
# ------------------------------------------------------------------------------------
# RUN
# ------------------------------------------------------------------------------------
self.runButton = self.logic.get("runButton")
self.runButton.connect('clicked()', self.onRunButton)
# ------------------------------------------------------------------------------------
# Statistics Table - Export
# ------------------------------------------------------------------------------------
self.mainLayout = self.logic.get("mainLayout")
self.tabROI = qt.QTabWidget()
self.tabROI.setTabPosition(0)
self.tabROI.adjustSize()
# ---------------------------- Directory - Export Button -----------------------------
self.directoryExport = ctk.ctkDirectoryButton()
self.exportCheckBox = qt.QCheckBox('Separate Files')
self.exportCheckBox.setChecked(True)
self.exportButton = qt.QPushButton(' Export ')
self.exportButton.enabled = True
self.exportPointValueCheckBox = qt.QCheckBox('Export Value on Each Point')
self.exportLayout = qt.QVBoxLayout()
self.directoryAndExportLayout = qt.QHBoxLayout()
self.directoryAndExportLayout.addWidget(self.directoryExport)
self.directoryAndExportLayout.addWidget(self.exportCheckBox)
self.directoryAndExportLayout.addWidget(self.exportPointValueCheckBox)
self.exportButtonsLayout = qt.QHBoxLayout()
self.exportButtonsLayout.addWidget(self.exportButton)
self.exportLayout.addLayout(self.directoryAndExportLayout)
self.exportLayout.addLayout(self.exportButtonsLayout)
self.layout.addStretch(1)
self.logic.updateInterface(self.tableField, self.ROIComboBox, self.ROIList, self.modelList, self.mainLayout)
# ------------------------------------------------------------------------------------
# OBSERVERS
# ------------------------------------------------------------------------------------
slicer.mrmlScene.AddObserver(slicer.mrmlScene.EndCloseEvent, self.onCloseScene)
def setup(self):
"""Init the widget """
self.modulePath = SlicerUtil.getModuleFolder("CIP_GetImage")
self.resourcesPath = os.path.join(self.modulePath,
"CIP_GetImage_Resources")
self.StudyId = ""
self.logic = CIP_GetImageLogic(self.modulePath)
# Widget to load cases faster
self.loadSaveDatabuttonsWidget = CIPUI.LoadSaveDataWidget(
parentWidget=self.parent)
self.loadSaveDatabuttonsWidget.setup(moduleName="CIP_GetImage")
#
# Obligatory parameters area
#
parametersCollapsibleButton = ctk.ctkCollapsibleButton()
parametersCollapsibleButton.text = "Image data"
self.layout.addWidget(parametersCollapsibleButton)
parametersFormLayout = qt.QFormLayout(parametersCollapsibleButton)
# Study radio buttons
label = qt.QLabel()
label.text = "Select the study:"
parametersFormLayout.addRow(label)
self.rbgStudy = qt.QButtonGroup()
for key in self.studyIds:
rbStudyid = qt.QRadioButton(key)
self.rbgStudy.addButton(rbStudyid)
parametersFormLayout.addWidget(rbStudyid)
self.txtOtherStudy = qt.QLineEdit()
self.txtOtherStudy.hide()
parametersFormLayout.addWidget(self.txtOtherStudy)
# Case id
self.txtCaseId = qt.QLineEdit()
parametersFormLayout.addRow("Case ID ", self.txtCaseId)
# Image types
label = qt.QLabel()
label.text = "Select the images that you want to load:"
parametersFormLayout.addRow(label)
self.cbsImageTypes = []
for key in self.imageTypes:
check = qt.QCheckBox()
check.checked = True
check.setText(key)
parametersFormLayout.addWidget(check)
self.cbsImageTypes.append(check)
# Label maps
label = qt.QLabel()
label.text = "Select the label maps that you want to load:"
parametersFormLayout.addRow(label)
# Labelmap types checkboxes
self.cbsLabelMapTypes = []
for key in self.labelMapTypes:
check = qt.QCheckBox()
check.setText(key)
check.checked = self.labelMapTypes[key][0]
parametersFormLayout.addWidget(check)
self.cbsLabelMapTypes.append(check)
# Load image Button
self.downloadButton = qt.QPushButton("Download")
self.downloadButton.toolTip = "Load the image"
#self.downloadButton.enabled = False
self.downloadButton.setStyleSheet(
"background-color: green; font-weight:bold; color:white")
parametersFormLayout.addRow(self.downloadButton)
self.downloadButton.connect('clicked (bool)', self.onDownloadButton)
# Information message
self.lblDownloading = qt.QLabel()
self.lblDownloading.text = "Downloading images. Please wait..."
self.lblDownloading.hide()
parametersFormLayout.addRow(self.lblDownloading)
#
# Optional Parameters
#
optionalParametersCollapsibleButton = ctk.ctkCollapsibleButton()
optionalParametersCollapsibleButton.text = "Optional parameters"
self.layout.addWidget(optionalParametersCollapsibleButton)
optionalParametersFormLayout = qt.QFormLayout(
optionalParametersCollapsibleButton)
# Local storage (Slicer temporary path)
self.localStoragePath = "{0}/CIP".format(slicer.app.temporaryPath)
if not os.path.exists(self.localStoragePath):
os.makedirs(self.localStoragePath)
# Make sure that everybody has write permissions (sometimes there are problems because of umask)
os.chmod(self.localStoragePath, 0o777)
self.storagePathButton = ctk.ctkDirectoryButton()
self.storagePathButton.directory = self.localStoragePath
optionalParametersFormLayout.addRow("Local directory: ",
self.storagePathButton)
# Connection type (SSH, "normal")
label = qt.QLabel()
label.text = "Connection type:"
optionalParametersFormLayout.addRow(label)
self.rbgConnectionType = qt.QButtonGroup()
self.rbSSH = qt.QRadioButton("SSH (secure connection)")
self.rbSSH.setChecked(True)
self.rbgConnectionType.addButton(self.rbSSH)
optionalParametersFormLayout.addWidget(self.rbSSH)
self.rbCP = qt.QRadioButton("Common")
self.rbgConnectionType.addButton(self.rbCP)
optionalParametersFormLayout.addWidget(self.rbCP)
# SSH Server login
self.txtServer = qt.QLineEdit()
s = SlicerUtil.settingGetOrSetDefault(
"CIP_GetImage", "server",
"This is your ssh user and server. Example: [email protected]")
self.txtServer.text = s # This is your ssh user and server. Example: [email protected]"
optionalParametersFormLayout.addRow("Server:", self.txtServer)
# Server root path
self.txtServerpath = qt.QLineEdit()
s = SlicerUtil.settingGetOrSetDefault(
"CIP_GetImage", "serverRootPath",
"This is your root path to search for files. Ex: /Cases/Processed")
self.txtServerpath.text = s # This is your root path to search for files. Ex: /Cases/Processed
optionalParametersFormLayout.addRow("Server root path:",
self.txtServerpath)
# SSH Private key
self.txtPrivateKeySSH = qt.QLineEdit()
s = SlicerUtil.settingGetOrSetDefault("CIP_GetImage", "sshKey", "")
self.txtPrivateKeySSH.text = s # this is the full path to your ssh key if you need it. Be aware of Unix/Windows comaptibility (hint: use os.path.join)
# Please notice that you won't need a SSH key if your computer already has one locally installed"
optionalParametersFormLayout.addRow(
"SSH private key (leave blank for computer's default): ",
self.txtPrivateKeySSH)
# Cache mode
self.cbCacheMode = qt.QCheckBox("Cache mode activated")
self.cbCacheMode.setChecked(True) # Cache mode is activated by default
optionalParametersFormLayout.addRow("", self.cbCacheMode)
# Clean cache Button
self.cleanCacheButton = qt.QPushButton("Clean cache")
self.cleanCacheButton.toolTip = "Remove all the local cached files"
optionalParametersFormLayout.addRow(self.cleanCacheButton)
optionalParametersCollapsibleButton.collapsed = True
if SlicerUtil.IsDevelopment:
# reload button
self.reloadButton = qt.QPushButton("Reload (just development)")
self.reloadButton.toolTip = "Reload this module (for development purposes)."
self.reloadButton.name = "Reload"
self.layout.addWidget(self.reloadButton)
self.reloadButton.connect('clicked()', self.onReload)
# Add vertical spacer
self.layout.addStretch(1)
# Connections
self.rbgStudy.connect("buttonClicked (QAbstractButton*)",
self.onRbStudyClicked)
self.txtOtherStudy.connect("textEdited (QString)",
self.onTxtOtherStudyEdited)
self.rbgConnectionType.connect("buttonClicked (QAbstractButton*)",
self.onRbgConnectionType)
self.storagePathButton.connect("directorySelected(QString)",
self.onTmpDirChanged)
self.cleanCacheButton.connect('clicked (bool)',
self.onCleanCacheButtonClicked)
def setup(self):
ScriptedLoadableModuleWidget.setup(self)
### Parameters Area
parametersCollapsibleButton = ctk.ctkCollapsibleButton()
parametersCollapsibleButton.text = "Parameters"
self.layout.addWidget(parametersCollapsibleButton)
# Layout within the dummy collapsible button
parametersFormLayout = qt.QFormLayout(parametersCollapsibleButton)
# fixed image (mrml input)
self.fixedMRMLSelector = slicer.qMRMLNodeComboBox()
self.fixedMRMLSelector.nodeTypes = ["vtkMRMLScalarVolumeNode"]
self.fixedMRMLSelector.selectNodeUponCreation = True
self.fixedMRMLSelector.addEnabled = False
self.fixedMRMLSelector.removeEnabled = False
self.fixedMRMLSelector.noneEnabled = False
self.fixedMRMLSelector.showHidden = False
self.fixedMRMLSelector.showChildNodeTypes = False
self.fixedMRMLSelector.setMRMLScene( slicer.mrmlScene )
self.fixedMRMLSelector.setToolTip ("Choose either an image within the MRML scene, or a directory containing a DICOM image")
parametersFormLayout.addRow("Fixed image: ", self.fixedMRMLSelector)
# fixed image (directory input)
self.fixedInputDirectory = ctk.ctkDirectoryButton()
self.fixedInputDirectory.directory = qt.QDir.homePath()
parametersFormLayout.addRow("", self.fixedInputDirectory)
# moving image (mrml input)
self.movingMRMLSelector = slicer.qMRMLNodeComboBox()
self.movingMRMLSelector.nodeTypes = ["vtkMRMLScalarVolumeNode"]
self.movingMRMLSelector.selectNodeUponCreation = True
self.movingMRMLSelector.addEnabled = False
self.movingMRMLSelector.removeEnabled = False
self.movingMRMLSelector.noneEnabled = False
self.movingMRMLSelector.showHidden = False
self.movingMRMLSelector.showChildNodeTypes = False
self.movingMRMLSelector.setMRMLScene( slicer.mrmlScene )
self.fixedMRMLSelector.setToolTip ("Choose either an image within the MRML scene, or a directory containing a DICOM image")
parametersFormLayout.addRow("Moving image: ", self.movingMRMLSelector)
# moving image (directory input)
self.movingInputDirectory = ctk.ctkDirectoryButton()
self.movingInputDirectory.directory = qt.QDir.homePath()
parametersFormLayout.addRow("", self.movingInputDirectory)
# transform (mrml input)
self.xformMRMLSelector = slicer.qMRMLNodeComboBox()
self.xformMRMLSelector.nodeTypes = ["vtkMRMLLinearTransformNode"]
self.xformMRMLSelector.selectNodeUponCreation = True
self.xformMRMLSelector.addEnabled = False
self.xformMRMLSelector.removeEnabled = False
self.xformMRMLSelector.noneEnabled = False
self.xformMRMLSelector.showHidden = False
self.xformMRMLSelector.showChildNodeTypes = False
self.xformMRMLSelector.setMRMLScene( slicer.mrmlScene )
#self.xformMRMLSelector.setToolTip( "Pick the input to the algorithm." )
parametersFormLayout.addRow("Transform: ", self.xformMRMLSelector)
# output directory selector
self.outputDirectory = ctk.ctkDirectoryButton()
self.outputDirectory.directory = qt.QDir.homePath()
parametersFormLayout.addRow("Output Directory: ", self.outputDirectory)
# check box to trigger taking screen shots for later use in tutorials
self.enableScreenshotsFlagCheckBox = qt.QCheckBox()
self.enableScreenshotsFlagCheckBox.checked = 0
self.enableScreenshotsFlagCheckBox.setToolTip("If checked, take screen shots for tutorials. Use Save Data to write them to disk.")
# parametersFormLayout.addRow("Enable Screenshots", self.enableScreenshotsFlagCheckBox)
# scale factor for screen shots
self.screenshotScaleFactorSliderWidget = ctk.ctkSliderWidget()
self.screenshotScaleFactorSliderWidget.singleStep = 1.0
self.screenshotScaleFactorSliderWidget.minimum = 1.0
self.screenshotScaleFactorSliderWidget.maximum = 50.0
self.screenshotScaleFactorSliderWidget.value = 1.0
self.screenshotScaleFactorSliderWidget.setToolTip("Set scale factor for the screen shots.")
# parametersFormLayout.addRow("Screenshot scale factor", self.screenshotScaleFactorSliderWidget)
# Apply Button
self.applyButton = qt.QPushButton("Apply")
self.applyButton.toolTip = "Run the algorithm."
self.applyButton.enabled = False
if (self.fixedMRMLSelector.currentNode()
and self.movingMRMLSelector.currentNode()
and self.xformMRMLSelector.currentNode()):
self.applyButton.enabled = True
parametersFormLayout.addRow(self.applyButton)
# connections
self.applyButton.connect('clicked(bool)', self.onApplyButton)
self.fixedMRMLSelector.connect(
"currentNodeChanged(vtkMRMLNode*)", self.onSelect)
self.movingMRMLSelector.connect(
"currentNodeChanged(vtkMRMLNode*)", self.onSelect)
self.xformMRMLSelector.connect(
"currentNodeChanged(vtkMRMLNode*)", self.onSelect)
# Add vertical spacer
self.layout.addStretch(1)
def setup(self):
print "-------Mesh Statistic Widget Setup-------"
ScriptedLoadableModuleWidget.setup(self)
# -------------------------------------------------------------------------------------
self.modelList = list()
self.fieldList = list()
self.ROIList = list()
self.ROIDict = dict() # Key = Name of ROI
# Value = Dictionary of Fields (key = Name of Field
# Value = dictionary of shapes
# key = name of shapes
# value = Statistics store()
self.logic = MeshStatisticsLogic(self)
# ---------------------------------------------------------------- #
# ---------------- Definition of the UI interface ---------------- #
# ---------------------------------------------------------------- #
# ------------ Loading of the .ui file ---------- #
loader = qt.QUiLoader()
moduleName = "MeshStatistics"
scriptedModulesPath = eval("slicer.modules.%s.path" % moduleName.lower())
scriptedModulesPath = os.path.dirname(scriptedModulesPath)
path = os.path.join(scriptedModulesPath, "Resources", "UI", "%s.ui" % moduleName)
qfile = qt.QFile(path)
qfile.open(qt.QFile.ReadOnly)
widget = loader.load(qfile, self.parent)
self.layout = self.parent.layout()
self.widget = widget
self.layout.addWidget(widget)
# ------------------------------------------------------------------------------------
# SHAPES INPUT
# ------------------------------------------------------------------------------------
self.inputComboBox = self.logic.get("inputComboBox")
self.inputComboBox.setMRMLScene(slicer.mrmlScene)
self.inputComboBox.connect("checkedNodesChanged()", self.onInputComboBoxCheckedNodesChanged)
# ------------------------------------------------------------------------------------
# ROI TABLE
# ------------------------------------------------------------------------------------
self.ROIComboBox = self.logic.get("ROIComboBox")
self.ROICheckBox = self.logic.get("ROICheckBox")
self.ROICheckBox.connect("stateChanged(int)", self.onROICheckBoxStateChanged)
# ------------------------------------------------------------------------------------
# FIELD TABLE
# ------------------------------------------------------------------------------------
self.tableField = self.logic.get("tableField")
self.tableField.setColumnCount(2)
self.tableField.setMinimumHeight(250)
self.tableField.setHorizontalHeaderLabels([" ", " Field Name "])
self.tableField.setColumnWidth(0, 20)
self.tableField.setColumnWidth(1, 260)
self.tableField.setSizePolicy(qt.QSizePolicy().Expanding, qt.QSizePolicy().Expanding)
# ------------------------------------------------------------------------------------
# RUN
# ------------------------------------------------------------------------------------
self.runButton = self.logic.get("runButton")
self.runButton.connect("clicked()", self.onRunButton)
# ------------------------------------------------------------------------------------
# Statistics Table - Export
# ------------------------------------------------------------------------------------
self.mainLayout = self.logic.get("mainLayout")
self.tabROI = qt.QTabWidget()
self.tabROI.setTabPosition(0)
self.tabROI.adjustSize()
# ---------------------------- Directory - Export Button -----------------------------
self.directoryExport = ctk.ctkDirectoryButton()
self.exportCheckBox = qt.QCheckBox("Separate Files")
self.exportCheckBox.setChecked(True)
self.exportButton = qt.QPushButton(" Export ")
self.exportButton.enabled = True
self.exportPointValueCheckBox = qt.QCheckBox("Export Value on Each Point")
self.exportLayout = qt.QVBoxLayout()
self.directoryAndExportLayout = qt.QHBoxLayout()
self.directoryAndExportLayout.addWidget(self.directoryExport)
self.directoryAndExportLayout.addWidget(self.exportCheckBox)
self.directoryAndExportLayout.addWidget(self.exportPointValueCheckBox)
self.exportButtonsLayout = qt.QHBoxLayout()
self.exportButtonsLayout.addWidget(self.exportButton)
self.exportLayout.addLayout(self.directoryAndExportLayout)
self.exportLayout.addLayout(self.exportButtonsLayout)
self.layout.addStretch(1)
self.logic.updateInterface(self.tableField, self.ROIComboBox, self.ROIList, self.modelList, self.mainLayout)
# ------------------------------------------------------------------------------------
# OBSERVERS
# ------------------------------------------------------------------------------------
def onCloseScene(obj, event):
# initialize Parameters
globals()["MeshStatistics"] = slicer.util.reloadScriptedModule("MeshStatistics")
slicer.mrmlScene.AddObserver(slicer.mrmlScene.EndCloseEvent, onCloseScene)
def setup( self ):
#
# Input frame
#
self.__inputFrame = ctk.ctkCollapsibleButton()
self.__inputFrame.text = "Input"
self.__inputFrame.collapsed = 0
inputFrameLayout = qt.QFormLayout(self.__inputFrame)
self.layout.addWidget(self.__inputFrame)
# Active report node
label = qt.QLabel('Report: ')
self.reportSelector = slicer.qMRMLNodeComboBox()
self.reportSelector.nodeTypes = ['vtkMRMLReportingReportNode']
self.reportSelector.setMRMLScene(slicer.mrmlScene)
self.reportSelector.addEnabled = True
self.reportSelector.removeEnabled = True
inputFrameLayout.addRow(label, self.reportSelector)
self.reportSelector.connect('currentNodeChanged(vtkMRMLNode*)', self.onReportNodeChanged)
# Volume being annotated (only one is allowed for the report)
label = qt.QLabel('NOTE: Only volumes loaded from DICOM can be annotated!')
inputFrameLayout.addRow(label)
label = qt.QLabel('Annotated volume: ')
self.volumeSelector = slicer.qMRMLNodeComboBox()
self.volumeSelector.nodeTypes = ['vtkMRMLScalarVolumeNode']
# only allow volumes with the attribute DICOM.instanceUIDs
self.volumeSelector.addAttribute('vtkMRMLScalarVolumeNode','DICOM.instanceUIDs')
self.volumeSelector.setMRMLScene(slicer.mrmlScene)
self.volumeSelector.addEnabled = False
inputFrameLayout.addRow(label, self.volumeSelector)
self.volumeSelector.connect('currentNodeChanged(vtkMRMLNode*)', self.onAnnotatedVolumeNodeChanged)
#
# Annotation frame -- vocabulary-based description of what is
# being annotated/marked up in this report
#
self.__annotationsFrame = ctk.ctkCollapsibleButton()
self.__annotationsFrame.text = "Annotation"
self.__annotationsFrame.collapsed = 0
annotationsFrameLayout = qt.QFormLayout(self.__annotationsFrame)
self.layout.addWidget(self.__annotationsFrame)
self.__defaultColorNode = self.__logic.GetDefaultColorNode()
self.__toolsColor = EditColor(self.__annotationsFrame,colorNode=self.__defaultColorNode)
#
# Markup frame -- summary of all the markup elements contained in the
# report
#
self.__markupFrame = ctk.ctkCollapsibleButton()
self.__markupFrame.text = "Markup"
self.__markupFrame.collapsed = 0
markupFrameLayout = qt.QFormLayout(self.__markupFrame)
self.layout.addWidget(self.__markupFrame)
self.__markupSliceText = qt.QLabel()
markupFrameLayout.addRow(self.__markupSliceText)
self.__markupTreeView = ReportingMarkupWidget(self.layout)
markupFrameLayout.addRow(self.__markupTreeView.widget)
# Editor frame
self.__editorFrame = ctk.ctkCollapsibleButton()
self.__editorFrame.text = 'Segmentation'
self.__editorFrame.collapsed = 0
editorFrameLayout = qt.QFormLayout(self.__editorFrame)
label = qt.QLabel('Segmentation volume: ')
self.segmentationSelector = slicer.qMRMLNodeComboBox()
self.segmentationSelector.nodeTypes = ['vtkMRMLLabelMapVolumeNode']
self.segmentationSelector.setMRMLScene(slicer.mrmlScene)
self.segmentationSelector.addEnabled = 1
self.segmentationSelector.noneEnabled = 1
self.segmentationSelector.removeEnabled = 0
self.segmentationSelector.showHidden = 0
self.segmentationSelector.showChildNodeTypes = 0
self.segmentationSelector.selectNodeUponCreation = 1
editorFrameLayout.addRow(label, self.segmentationSelector)
editorWidgetParent = slicer.qMRMLWidget()
editorWidgetParent.setLayout(qt.QVBoxLayout())
editorWidgetParent.setMRMLScene(slicer.mrmlScene)
self.__editorWidget = EditorWidget(parent=editorWidgetParent,showVolumesFrame=False)
self.__editorWidget.setup()
self.__editorWidget.toolsColor.frame.setVisible(False)
editorFrameLayout.addRow(editorWidgetParent)
markupFrameLayout.addRow(self.__editorFrame)
self.segmentationSelector.connect('currentNodeChanged(vtkMRMLNode*)', self.onSegmentationNodeChanged)
# IO frame
self.__ioFrame = ctk.ctkCollapsibleButton()
self.__ioFrame.text = 'Import/Export'
self.__ioFrame.collapsed = 1
ioFrameLayout = qt.QGridLayout(self.__ioFrame)
self.layout.addWidget(self.__ioFrame)
# Buttons to save/load report using AIM XML serialization
label = qt.QLabel('Export folder')
self.__exportFolderPicker = ctk.ctkDirectoryButton()
exportButton = qt.QPushButton('Export')
exportButton.connect('clicked()', self.onReportExport)
ioFrameLayout.addWidget(label,0,0)
ioFrameLayout.addWidget(self.__exportFolderPicker,0,1)
ioFrameLayout.addWidget(exportButton,0,2)
label = qt.QLabel('AIM file to import')
self.__aimFilePicker = qt.QPushButton('N/A')
self.__aimFilePicker.connect('clicked()',self.onSelectAIMFile)
button = qt.QPushButton('Import')
button.connect('clicked()', self.onReportImport)
ioFrameLayout.addWidget(label,1,0)
ioFrameLayout.addWidget(self.__aimFilePicker,1,1)
ioFrameLayout.addWidget(button,1,2)
self.importAIMFile = None
self.reportSelector.connect('currentNodeChanged(vtkMRMLNode*)', self.updateWidgets)
self.volumeSelector.connect('currentNodeChanged(vtkMRMLNode*)', self.updateWidgets)
self.updateWidgets()
self.layout.addStretch(1)
self.__editorParameterNode = self.editUtil.getParameterNode()
self.__editorParameterNode.AddObserver(vtk.vtkCommand.ModifiedEvent, self.onEditorParameterNodeChanged)
def setup( self ):
#
# Input frame
#
self.__inputFrame = ctk.ctkCollapsibleButton()
self.__inputFrame.text = "Input"
self.__inputFrame.collapsed = 0
inputFrameLayout = qt.QFormLayout(self.__inputFrame)
self.layout.addWidget(self.__inputFrame)
# Active report node
label = qt.QLabel('Report: ')
self.__reportSelector = slicer.qMRMLNodeComboBox()
self.__reportSelector.nodeTypes = ['vtkMRMLReportingReportNode']
self.__reportSelector.setMRMLScene(slicer.mrmlScene)
self.__reportSelector.addEnabled = 1
self.__reportSelector.removeEnabled = 0
inputFrameLayout.addRow(label, self.__reportSelector)
self.__reportSelector.connect('mrmlSceneChanged(vtkMRMLScene*)', self.onMRMLSceneChanged)
self.__reportSelector.connect('currentNodeChanged(vtkMRMLNode*)', self.onReportNodeChanged)
# Volume being annotated (only one is allowed for the report)
label = qt.QLabel('NOTE: Only volumes loaded from DICOM can be annotated!')
inputFrameLayout.addRow(label)
label = qt.QLabel('Annotated volume: ')
self.__volumeSelector = slicer.qMRMLNodeComboBox()
self.__volumeSelector.nodeTypes = ['vtkMRMLScalarVolumeNode']
# only allow volumes with the attribute DICOM.instanceUIDs
self.__volumeSelector.addAttribute('vtkMRMLScalarVolumeNode','DICOM.instanceUIDs')
self.__volumeSelector.setMRMLScene(slicer.mrmlScene)
self.__volumeSelector.addEnabled = False
inputFrameLayout.addRow(label, self.__volumeSelector)
self.__volumeSelector.connect('currentNodeChanged(vtkMRMLNode*)', self.onAnnotatedVolumeNodeChanged)
self.__volumeSelector.connect('mrmlSceneChanged(vtkMRMLScene*)', self.onMRMLSceneChanged)
#
# Annotation frame -- vocabulary-based description of what is
# being annotated/marked up in this report
#
self.__annotationsFrame = ctk.ctkCollapsibleButton()
self.__annotationsFrame.text = "Annotation"
self.__annotationsFrame.collapsed = 0
annotationsFrameLayout = qt.QFormLayout(self.__annotationsFrame)
self.layout.addWidget(self.__annotationsFrame)
self.__defaultColorNode = self.__logic.GetDefaultColorNode()
self.__toolsColor = EditColor(self.__annotationsFrame,colorNode=self.__defaultColorNode)
#
# Markup frame -- summary of all the markup elements contained in the
# report
#
self.__markupFrame = ctk.ctkCollapsibleButton()
self.__markupFrame.text = "Markup"
self.__markupFrame.collapsed = 0
markupFrameLayout = qt.QFormLayout(self.__markupFrame)
self.layout.addWidget(self.__markupFrame)
# Add a flag to switch between different tree view models
self.__useNewTreeView = 1
# Add the tree widget
if self.__useNewTreeView == 1:
self.__markupTreeView = slicer.modulewidget.qMRMLReportingTreeView()
self.__markupTreeView.sceneModelType = "DisplayableHierarchy"
else:
self.__markupTreeView = slicer.qMRMLTreeView()
self.__markupTreeView.sceneModelType = "Displayable"
self.__markupTreeView.setMRMLScene(self.__logic.GetMRMLScene())
self.__markupSliceText = qt.QLabel()
markupFrameLayout.addRow(self.__markupSliceText)
markupFrameLayout.addRow(self.__markupTreeView)
# Editor frame
self.__editorFrame = ctk.ctkCollapsibleButton()
self.__editorFrame.text = 'Segmentation'
self.__editorFrame.collapsed = 0
editorFrameLayout = qt.QFormLayout(self.__editorFrame)
label = qt.QLabel('Segmentation volume: ')
self.__segmentationSelector = slicer.qMRMLNodeComboBox()
self.__segmentationSelector.nodeTypes = ['vtkMRMLScalarVolumeNode']
self.__segmentationSelector.setMRMLScene(slicer.mrmlScene)
self.__segmentationSelector.addEnabled = 1
self.__segmentationSelector.noneEnabled = 1
self.__segmentationSelector.removeEnabled = 0
self.__segmentationSelector.showHidden = 0
self.__segmentationSelector.showChildNodeTypes = 0
self.__segmentationSelector.selectNodeUponCreation = 1
self.__segmentationSelector.addAttribute('vtkMRMLScalarVolumeNode','LabelMap',1)
editorFrameLayout.addRow(label, self.__segmentationSelector)
editorWidgetParent = slicer.qMRMLWidget()
editorWidgetParent.setLayout(qt.QVBoxLayout())
editorWidgetParent.setMRMLScene(slicer.mrmlScene)
self.__editorWidget = EditorWidget(parent=editorWidgetParent,showVolumesFrame=False)
self.__editorWidget.setup()
self.__editorWidget.toolsColor.frame.setVisible(False)
editorFrameLayout.addRow(editorWidgetParent)
markupFrameLayout.addRow(self.__editorFrame)
self.__segmentationSelector.connect('currentNodeChanged(vtkMRMLNode*)', self.onSegmentationNodeChanged)
self.__segmentationSelector.connect('mrmlSceneChanged(vtkMRMLScene*)', self.onMRMLSceneChanged)
# IO frame
self.__ioFrame = ctk.ctkCollapsibleButton()
self.__ioFrame.text = 'Import/Export'
self.__ioFrame.collapsed = 1
ioFrameLayout = qt.QGridLayout(self.__ioFrame)
self.layout.addWidget(self.__ioFrame)
# Buttons to save/load report using AIM XML serialization
label = qt.QLabel('Export folder')
self.__exportFolderPicker = ctk.ctkDirectoryButton()
exportButton = qt.QPushButton('Export')
exportButton.connect('clicked()', self.onReportExport)
ioFrameLayout.addWidget(label,0,0)
ioFrameLayout.addWidget(self.__exportFolderPicker,0,1)
ioFrameLayout.addWidget(exportButton,0,2)
label = qt.QLabel('AIM file to import')
self.__aimFilePicker = qt.QPushButton('N/A')
self.__aimFilePicker.connect('clicked()',self.onSelectAIMFile)
button = qt.QPushButton('Import')
button.connect('clicked()', self.onReportImport)
ioFrameLayout.addWidget(label,1,0)
ioFrameLayout.addWidget(self.__aimFilePicker,1,1)
ioFrameLayout.addWidget(button,1,2)
self.__importAIMFile = None
self.__reportSelector.connect('currentNodeChanged(vtkMRMLNode*)', self.updateWidgets)
self.__volumeSelector.connect('currentNodeChanged(vtkMRMLNode*)', self.updateWidgets)
self.updateWidgets()
self.layout.addStretch(1)
self.__editorParameterNode = self.editUtil.getParameterNode()
self.__editorParameterNode.AddObserver(vtk.vtkCommand.ModifiedEvent, self.onEditorParameterNodeChanged)
def setup(self):
"""This is called one time when the module GUI is initialized
"""
ScriptedLoadableModuleWidget.setup(self)
# Create objects that can be used anywhere in the module. Example: in most cases there should be just one
# object of the logic class
self.logic = CIP_ParenchymaSubtypeTrainingLogic()
self.currentVolumeLoaded = None
self.blockNodeEvents = False
##########
# Main area
self.mainAreaCollapsibleButton = ctk.ctkCollapsibleButton()
self.mainAreaCollapsibleButton.text = "Main area"
self.layout.addWidget(self.mainAreaCollapsibleButton, SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.mainLayout = qt.QGridLayout(self.mainAreaCollapsibleButton)
# Node selector
volumeLabel = qt.QLabel("Active volume: ")
volumeLabel.setStyleSheet("margin-left:5px")
self.mainLayout.addWidget(volumeLabel, 0, 0)
self.volumeSelector = slicer.qMRMLNodeComboBox()
self.volumeSelector.nodeTypes = ("vtkMRMLScalarVolumeNode", "")
self.volumeSelector.selectNodeUponCreation = True
self.volumeSelector.autoFillBackground = True
self.volumeSelector.addEnabled = False
self.volumeSelector.noneEnabled = False
self.volumeSelector.removeEnabled = False
self.volumeSelector.showHidden = False
self.volumeSelector.showChildNodeTypes = False
self.volumeSelector.setMRMLScene(slicer.mrmlScene)
self.volumeSelector.setFixedWidth(250)
self.volumeSelector.setStyleSheet("margin: 15px 0")
#self.volumeSelector.selectNodeUponCreation = False
self.mainLayout.addWidget(self.volumeSelector, 0, 1, 1, 3)
labelsStyle = "font-weight: bold; margin: 0 0 5px 5px;"
# Types Radio Buttons
typesLabel = qt.QLabel("Select the type")
typesLabel.setStyleSheet(labelsStyle)
typesLabel.setFixedHeight(15)
self.mainLayout.addWidget(typesLabel, 1, 0)
self.typesFrame = qt.QFrame()
self.typesLayout = qt.QVBoxLayout(self.typesFrame)
self.mainLayout.addWidget(self.typesFrame, 2, 0, SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.typesRadioButtonGroup = qt.QButtonGroup()
for key in self.logic.params.mainTypes.iterkeys():
rbitem = qt.QRadioButton(self.logic.params.getMainTypeLabel(key))
self.typesRadioButtonGroup.addButton(rbitem, key)
self.typesLayout.addWidget(rbitem)
self.typesRadioButtonGroup.buttons()[0].setChecked(True)
# Subtypes Radio buttons
subtypesLabel = qt.QLabel("Select the subtype")
subtypesLabel.setStyleSheet(labelsStyle)
subtypesLabel.setFixedHeight(15)
self.mainLayout.addWidget(subtypesLabel, 1, 1)
self.subtypesRadioButtonGroup = qt.QButtonGroup()
self.subtypesFrame = qt.QFrame()
self.subtypesFrame.setMinimumHeight(275)
self.subtypesLayout = qt.QVBoxLayout(self.subtypesFrame)
self.subtypesLayout.setAlignment(SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.subtypesLayout.setStretch(0, 0)
self.mainLayout.addWidget(self.subtypesFrame, 2, 1, SlicerUtil.ALIGNMENT_VERTICAL_TOP) # Put the frame in the top
# The content will be loaded dynamically every time the main type is modified
# Artifact radio buttons
self.artifactsLabel = qt.QLabel("Artifact")
self.artifactsLabel.setStyleSheet(labelsStyle)
self.artifactsLabel.setFixedHeight(15)
self.mainLayout.addWidget(self.artifactsLabel, 1, 2)
#self.mainLayout.addWidget(qt.QLabel("Select the artifact"), 1, 1)
self.artifactsRadioButtonGroup = qt.QButtonGroup()
self.artifactsFrame = qt.QFrame()
self.artifactsLayout = qt.QVBoxLayout(self.artifactsFrame)
self.mainLayout.addWidget(self.artifactsFrame, 2, 2, SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.artifactsRadioButtonGroup = qt.QButtonGroup()
for artifactId in self.logic.params.artifacts.iterkeys():
rbitem = qt.QRadioButton(self.logic.params.getArtifactLabel(artifactId))
self.artifactsRadioButtonGroup.addButton(rbitem, artifactId)
self.artifactsLayout.addWidget(rbitem)
self.artifactsRadioButtonGroup.buttons()[0].setChecked(True)
# Load caselist button
self.loadButton = ctk.ctkPushButton()
self.loadButton.text = "Load fiducials file"
self.loadButton.setIcon(qt.QIcon("{0}/open_file.png".format(SlicerUtil.CIP_ICON_DIR)))
self.loadButton.setIconSize(qt.QSize(20, 20))
self.loadButton.setFixedWidth(135)
self.mainLayout.addWidget(self.loadButton, 3, 0)
# Remove fiducial button
self.removeLastFiducialButton = ctk.ctkPushButton()
self.removeLastFiducialButton.text = "Remove last fiducial"
self.removeLastFiducialButton.toolTip = "Remove the last fiducial added"
self.removeLastFiducialButton.setIcon(qt.QIcon("{0}/delete.png".format(SlicerUtil.CIP_ICON_DIR)))
self.removeLastFiducialButton.setIconSize(qt.QSize(20, 20))
self.removeLastFiducialButton.setFixedWidth(200)
self.mainLayout.addWidget(self.removeLastFiducialButton, 3, 1)
# Save results button
self.saveResultsButton = ctk.ctkPushButton()
self.saveResultsButton.setText("Save markups")
self.saveResultsButton.toolTip = "Save the markups in the specified directory"
self.saveResultsButton.setIcon(qt.QIcon("{0}/Save.png".format(SlicerUtil.CIP_ICON_DIR)))
self.saveResultsButton.setIconSize(qt.QSize(20,20))
self.mainLayout.addWidget(self.saveResultsButton, 4, 0)
# Save results directory button
defaultPath = os.path.join(SlicerUtil.getSettingsDataFolder(self.moduleName), "Results") # Assign a default path for the results
path = SlicerUtil.settingGetOrSetDefault(self.moduleName, "SaveResultsDirectory", defaultPath)
self.saveResultsDirectoryButton = ctk.ctkDirectoryButton()
self.saveResultsDirectoryButton.directory = path
self.saveResultsDirectoryButton.setMaximumWidth(375)
self.mainLayout.addWidget(self.saveResultsDirectoryButton, 4, 1, 1, 2)
#####
# Case navigator
if SlicerUtil.isSlicerACILLoaded():
caseNavigatorAreaCollapsibleButton = ctk.ctkCollapsibleButton()
caseNavigatorAreaCollapsibleButton.text = "Case navigator"
self.layout.addWidget(caseNavigatorAreaCollapsibleButton, 0x0020)
# caseNavigatorLayout = qt.QVBoxLayout(caseNavigatorAreaCollapsibleButton)
# Add a case list navigator
from ACIL.ui import CaseNavigatorWidget
self.caseNavigatorWidget = CaseNavigatorWidget(self.moduleName, caseNavigatorAreaCollapsibleButton)
self.caseNavigatorWidget.setup()
# Listen for the event of loading volume
#self.caseNavigatorWidget.addObservable(self.caseNavigatorWidget.EVENT_VOLUME_LOADED, self.onNewVolumeLoaded)
self.layout.addStretch()
self.updateState()
# Connections
self.typesRadioButtonGroup.connect("buttonClicked (QAbstractButton*)", self.__onTypesRadioButtonClicked__)
self.subtypesRadioButtonGroup.connect("buttonClicked (QAbstractButton*)", self.__onSubtypesRadioButtonClicked__)
self.artifactsRadioButtonGroup.connect("buttonClicked (QAbstractButton*)", self.__onSubtypesRadioButtonClicked__)
self.volumeSelector.connect('currentNodeChanged(vtkMRMLNode*)', self.__onCurrentNodeChanged__)
self.loadButton.connect('clicked()', self.openFiducialsFile)
self.removeLastFiducialButton.connect('clicked()', self.__onRemoveLastFiducialButtonClicked__)
# self.saveResultsOpenDirectoryDialogButton.connect('clicked()', self.onOpenDirectoryDialogButtonClicked)
self.saveResultsDirectoryButton.connect("directoryChanged (str)", self.__onSaveResultsDirectoryChanged__)
self.saveResultsButton.connect('clicked()', self.__onSaveResultsButtonClicked__)
self.observers = []
self.observers.append(slicer.mrmlScene.AddObserver(slicer.vtkMRMLScene.NodeAddedEvent, self.__onNodeAddedObserver__))
self.observers.append(slicer.mrmlScene.AddObserver(slicer.vtkMRMLScene.EndCloseEvent, self.__onSceneClosed__))
def setup(self):
w = qt.QWidget()
layout = qt.QGridLayout()
w.setLayout(layout)
self.layout.addWidget(w)
w.show()
self.layout = layout
####################IMPORTAR VOLUMEN 4D#################################################3
### Se crea la sección para importar
importDataCollapsibleButton = ctk.ctkCollapsibleButton()
importDataCollapsibleButton.text = "Import DICOM"
self.layout.addWidget(importDataCollapsibleButton)
importDataFormLayout = qt.QFormLayout(importDataCollapsibleButton)
#### Crear desplegable para seleccionar dirección del volumen
self.__fDialog = ctk.ctkDirectoryButton()
self.__fDialog.caption = 'Input directory'
importDataFormLayout.addRow('Input directory:', self.__fDialog)
#### Crear desplegable para seleccionar dirección del volumen
self.inputSelector = slicer.qMRMLNodeComboBox()
self.inputSelector.nodeTypes = ['vtkMRMLMultiVolumeNode']
self.inputSelector.addEnabled = True # Se habilita la posibildad al usuario de crear un nuevo nodo con este widget
self.inputSelector.removeEnabled = True # Se le quita al usuario la posibilidad de eliminar el nodo seleccionado en ese momento
self.inputSelector.setMRMLScene(slicer.mrmlScene)
importDataFormLayout.addRow("Input node:", self.inputSelector)
self.parent.connect('mrmlSceneChanged(vtkMRMLScene*)',
self.inputSelector, 'setMRMLScene(vtkMRMLScene*)')
self.__nameFrame = qt.QLineEdit()
self.__nameFrame.text = 'NA'
importDataFormLayout.addRow('Volume Name', self.__nameFrame)
# Botón de importar
self.buttonImport = qt.QPushButton("Import")
self.buttonImport.toolTip = "Run the algorithm."
importDataFormLayout.addRow("", self.buttonImport)
self.buttonImport.connect('clicked(bool)', self.importFunction)
### Se crea la sección para exportar
exportDataCollapsibleButton = ctk.ctkCollapsibleButton()
exportDataCollapsibleButton.text = "Export DICOM"
self.layout.addWidget(exportDataCollapsibleButton)
exportDataFormLayout = qt.QFormLayout(exportDataCollapsibleButton)
###Selector de volumen donde se guardara el volumen de la direccion
self.outputSelector = slicer.qMRMLNodeComboBox()
self.outputSelector.nodeTypes = ['vtkMRMLMultiVolumeNode']
self.outputSelector.addEnabled = False # Se habilita la posibildad al usuario de crear un nuevo nodo con este widget
self.outputSelector.removeEnabled = False # Se le quita al usuario la posibilidad de eliminar el nodo seleccionado en ese momento
self.outputSelector.setMRMLScene(slicer.mrmlScene)
exportDataFormLayout.addRow("Volumen to export:", self.outputSelector)
self.parent.connect('mrmlSceneChanged(vtkMRMLScene*)',
self.outputSelector, 'setMRMLScene(vtkMRMLScene*)')
#### Crear desplegable para seleccionar direccion del volumen
self.__fDialogOutput = ctk.ctkDirectoryButton()
self.__fDialogOutput.caption = 'DICOM directory'
exportDataFormLayout.addRow('DiCOM directory:', self.__fDialogOutput)
# Botón de exportar
self.buttonExport = qt.QPushButton("Export")
self.buttonExport.toolTip = "Run the algorithm."
exportDataFormLayout.addRow("", self.buttonExport)
self.buttonExport.connect('clicked(bool)', self.ExportFunction)
def setup(self):
# Instantiate and connect widgets ...
#
# Reload and Test area
#
reloadCollapsibleButton = ctk.ctkCollapsibleButton()
reloadCollapsibleButton.text = "Reload && Test"
self.layout.addWidget(reloadCollapsibleButton)
reloadFormLayout = qt.QFormLayout(reloadCollapsibleButton)
# reload button
# (use this during development, but remove it when delivering
# your module to users)
self.reloadButton = qt.QPushButton("Reload")
self.reloadButton.toolTip = "Reload this module."
self.reloadButton.name = "tipiXExporter Reload"
reloadFormLayout.addWidget(self.reloadButton)
self.reloadButton.connect('clicked()', self.onReload)
# reload and test button
# (use this during development, but remove it when delivering
# your module to users)
self.reloadAndTestButton = qt.QPushButton("Reload and Test")
self.reloadAndTestButton.toolTip = "Reload this module and then run the self tests."
reloadFormLayout.addWidget(self.reloadAndTestButton)
self.reloadAndTestButton.connect('clicked()', self.onReloadAndTest)
#
# Parameters Area
#
parametersCollapsibleButton = ctk.ctkCollapsibleButton()
parametersCollapsibleButton.text = "Parameters"
self.layout.addWidget(parametersCollapsibleButton)
# Layout within the dummy collapsible button
parametersFormLayout = qt.QFormLayout(parametersCollapsibleButton)
#
# source directory button
#
self.sourceButton = ctk.ctkDirectoryButton()
self.sourceButton.setToolTip( "Select the directory containing the source image volumes to load." )
parametersFormLayout.addRow("Source Image Files: ", self.sourceButton)
#
# destination directory button
#
self.destinationButton = ctk.ctkDirectoryButton()
self.destinationButton.setToolTip( "Select the destination for rendered images." )
parametersFormLayout.addRow("Destination Files: ", self.destinationButton)
if False:
#
# check box to trigger taking screen shots for later use in tutorials
#
self.enableScreenshotsFlagCheckBox = qt.QCheckBox()
self.enableScreenshotsFlagCheckBox.checked = 0
self.enableScreenshotsFlagCheckBox.setToolTip("If checked, take screen shots for tutorials. Use Save Data to write them to disk.")
parametersFormLayout.addRow("Enable Screenshots", self.enableScreenshotsFlagCheckBox)
#
# scale factor for screen shots
#
self.screenshotScaleFactorSliderWidget = ctk.ctkSliderWidget()
self.screenshotScaleFactorSliderWidget.singleStep = 1.0
self.screenshotScaleFactorSliderWidget.minimum = 1.0
self.screenshotScaleFactorSliderWidget.maximum = 50.0
self.screenshotScaleFactorSliderWidget.value = 1.0
self.screenshotScaleFactorSliderWidget.setToolTip("Set scale factor for the screen shots.")
parametersFormLayout.addRow("Screenshot scale factor", self.screenshotScaleFactorSliderWidget)
#
# Apply Button
#
self.applyButton = qt.QPushButton("Apply")
self.applyButton.toolTip = "Render the images."
parametersFormLayout.addRow(self.applyButton)
# connections
self.applyButton.connect('clicked(bool)', self.onApplyButton)
# Add vertical spacer
self.layout.addStretch(1)
def setup(self):
ScriptedLoadableModuleWidget.setup(self)
# -------------------------------------------------------------------------------------
self.modelList = list()
self.fieldList = list()
self.ROIList = list()
self.ROIDict = dict() # Key = Name of ROI
# Value = Dictionary of Fields (key = Name of Field
# Value = dictionary of shapes
# key = name of shapes
# value = Statistics store()
self.logic = MeshStatisticsLogic()
# ------------------------------------------------------------------------------------
# SHAPES INPUT
# ------------------------------------------------------------------------------------
self.inputComboBox = slicer.qMRMLCheckableNodeComboBox()
self.inputComboBox.nodeTypes = ['vtkMRMLModelNode']
self.inputComboBox.setMRMLScene(slicer.mrmlScene)
inputLayout = qt.QFormLayout()
inputLayout.addRow(' Models: ', self.inputComboBox)
self.layout.addLayout(inputLayout)
self.inputComboBox.connect('checkedNodesChanged()', self.onInputComboBoxCheckedNodesChanged)
# ------------------------------------------------------------------------------------
# ROI TABLE
# ------------------------------------------------------------------------------------
self.ROIComboBox = ctk.ctkComboBox()
self.ROIComboBox.adjustSize()
self.ROICheckBox = qt.QCheckBox('All')
ROILayout = qt.QHBoxLayout()
ROILayout_0 = qt.QFormLayout()
ROILayout_0.addRow(' Region considered: ', self.ROIComboBox)
ROILayout.addLayout(ROILayout_0)
ROILayout.addWidget(self.ROICheckBox)
self.layout.addLayout(ROILayout)
self.ROICheckBox.connect('stateChanged(int)', self.onROICheckBoxStateChanged)
# ------------------------------------------------------------------------------------
# FIELD TABLE
# ------------------------------------------------------------------------------------
self.tableField = qt.QTableWidget()
self.tableField.setColumnCount(2)
self.tableField.setMinimumHeight(250)
self.tableField.setHorizontalHeaderLabels([' ', ' Field Name '])
self.tableField.setColumnWidth(0, 20)
self.tableField.setColumnWidth(1, 260)
self.tableField.setSizePolicy(qt.QSizePolicy().Expanding, qt.QSizePolicy().Expanding)
label = qt.QLabel(' Select a Field to compute statistics on:')
self.fieldLayout = qt.QVBoxLayout()
self.fieldLayout.addWidget(label)
self.fieldLayout.addWidget(self.tableField)
self.layout.addLayout(self.fieldLayout)
# ------------------------------------------------------------------------------------
# RUN
# ------------------------------------------------------------------------------------
self.runButton = qt.QPushButton(' Run ')
self.runButton.enabled = False
roiLayout = qt.QHBoxLayout()
roiLayout.addWidget(self.runButton)
self.layout.addLayout(roiLayout)
self.runButton.connect('clicked()', self.onRunButton)
# ------------------------------------------------------------------------------------
# Statistics Table - Export
# ------------------------------------------------------------------------------------
self.tabROI = qt.QTabWidget()
self.tabROI.setTabPosition(0)
self.tabROI.adjustSize()
# ---------------------------- Directory - Export Button -----------------------------
self.directoryExport = ctk.ctkDirectoryButton()
self.exportCheckBox = qt.QCheckBox('Separate Files')
self.exportCheckBox.setChecked(True)
self.exportButton = qt.QPushButton(' Export ')
self.exportButton.enabled = True
self.exportPointValueCheckBox = qt.QCheckBox('Export Value on Each Point')
self.exportLayout = qt.QVBoxLayout()
self.directoryAndExportLayout = qt.QHBoxLayout()
self.directoryAndExportLayout.addWidget(self.directoryExport)
self.directoryAndExportLayout.addWidget(self.exportCheckBox)
self.directoryAndExportLayout.addWidget(self.exportPointValueCheckBox)
self.exportButtonsLayout = qt.QHBoxLayout()
self.exportButtonsLayout.addWidget(self.exportButton)
self.exportLayout.addLayout(self.directoryAndExportLayout)
self.exportLayout.addLayout(self.exportButtonsLayout)
self.layout.addStretch(1)
self.logic.updateInterface(self.tableField, self.ROIComboBox, self.ROIList, self.modelList, self.layout)
# ------------------------------------------------------------------------------------
# OBSERVERS
# ------------------------------------------------------------------------------------
def onCloseScene(obj, event):
# initialize Parameters
globals()['MeshStatistics'] = slicer.util.reloadScriptedModule('MeshStatistics')
slicer.mrmlScene.AddObserver(slicer.mrmlScene.EndCloseEvent, onCloseScene)
def setup(self):
w = qt.QWidget()
layout = qt.QGridLayout()
w.setLayout(layout)
self.layout.addWidget(w)
w.show()
self.layout = layout
####################IMPORTAR VOLUMEN 4D#################################################3
### Se crea la sección para cargar el volumen 4D en una pestaña desplegable
importDataCollapsibleButton = ctk.ctkCollapsibleButton()
importDataCollapsibleButton.text = "Import Data"
self.layout.addWidget(importDataCollapsibleButton)
importDataFormLayout = qt.QFormLayout(importDataCollapsibleButton)
#### Crear desplegable para seleccionar dirección del volumen
self.__fDialog = ctk.ctkDirectoryButton()
self.__fDialog.caption = 'Input directory'
importDataFormLayout.addRow('Input directory:', self.__fDialog)
###Selector de volumen donde se guardara el volumen de la direccion
self.outputSelector = slicer.qMRMLNodeComboBox()
self.outputSelector.nodeTypes = ['vtkMRMLMultiVolumeNode']
self.outputSelector.addEnabled = True # Se habilita la posibildad al usuario de crear un nuevo nodo con este widget
self.outputSelector.removeEnabled = False # Se le quita al usuario la posibilidad de eliminar el nodo seleccionado en ese momento
self.outputSelector.setMRMLScene(slicer.mrmlScene)
importDataFormLayout.addRow("Output node:", self.outputSelector)
self.parent.connect('mrmlSceneChanged(vtkMRMLScene*)',
self.outputSelector, 'setMRMLScene(vtkMRMLScene*)')
### Parametros avanzados
self.__dicomTag = qt.QLineEdit()
self.__dicomTag.text = 'NA'
importDataFormLayout.addRow('Frame identifying DICOM tag:',
self.__dicomTag)
self.__veLabel = qt.QLineEdit()
self.__veLabel.text = 'na'
importDataFormLayout.addRow('Frame identifying units:', self.__veLabel)
self.__veInitial = qt.QDoubleSpinBox()
self.__veInitial.value = 0
importDataFormLayout.addRow('Initial value:', self.__veInitial)
self.__veStep = qt.QDoubleSpinBox()
self.__veStep.value = 1
importDataFormLayout.addRow('Step:', self.__veStep)
self.__te = qt.QDoubleSpinBox()
self.__te.value = 1
importDataFormLayout.addRow('EchoTime:', self.__te)
self.__tr = qt.QDoubleSpinBox()
self.__tr.value = 1
importDataFormLayout.addRow('RepetitionTime:', self.__tr)
self.__fa = qt.QDoubleSpinBox()
self.__fa.value = 1
importDataFormLayout.addRow('FlipAngle:', self.__fa)
# Botón de importar
self.buttonImport = qt.QPushButton("Import")
self.buttonImport.toolTip = "Run the algorithm."
##self.buttonImport.enabled = True
importDataFormLayout.addRow(" ",
self.buttonImport)
self.buttonImport.connect('clicked(bool)', self.importFunction)
def setup(self):
# Instantiate and connect widgets ...
# Collapsible button
dummyCollapsibleButton = ctk.ctkCollapsibleButton()
dummyCollapsibleButton.text = "Basic settings"
self.layout.addWidget(dummyCollapsibleButton)
dummyFormLayout = qt.QFormLayout(dummyCollapsibleButton)
# add input directory selector
label = qt.QLabel("Input directory:")
self.__fDialog = ctk.ctkDirectoryButton()
self.__fDialog.caption = "Input directory"
dummyFormLayout.addRow(label, self.__fDialog)
label = qt.QLabel("Output node:")
self.__mvSelector = slicer.qMRMLNodeComboBox()
self.__mvSelector.nodeTypes = ["vtkMRMLMultiVolumeNode"]
self.__mvSelector.setMRMLScene(slicer.mrmlScene)
self.__mvSelector.connect("mrmlSceneChanged(vtkMRMLScene*)", self.onMRMLSceneChanged)
self.__mvSelector.addEnabled = 1
dummyFormLayout.addRow(label, self.__mvSelector)
# Collapsible button
dummyCollapsibleButton = ctk.ctkCollapsibleButton()
dummyCollapsibleButton.text = "Advanced settings"
dummyCollapsibleButton.collapsed = 1
self.layout.addWidget(dummyCollapsibleButton)
dummyFormLayout = qt.QFormLayout(dummyCollapsibleButton)
self.__advancedFrame = dummyCollapsibleButton
label = qt.QLabel("Frame identifying DICOM tag (if known):")
self.__dicomTag = qt.QLineEdit()
self.__dicomTag.text = "NA"
dummyFormLayout.addRow(label, self.__dicomTag)
label = qt.QLabel("Frame identifying units:")
self.__veLabel = qt.QLineEdit()
self.__veLabel.text = "na"
dummyFormLayout.addRow(label, self.__veLabel)
label = qt.QLabel("Initial value:")
self.__veInitial = qt.QDoubleSpinBox()
self.__veInitial.value = 0
dummyFormLayout.addRow(label, self.__veInitial)
label = qt.QLabel("Step:")
self.__veStep = qt.QDoubleSpinBox()
self.__veStep.value = 1
dummyFormLayout.addRow(label, self.__veStep)
label = qt.QLabel("EchoTime:")
self.__te = qt.QDoubleSpinBox()
self.__te.value = 1
dummyFormLayout.addRow(label, self.__te)
label = qt.QLabel("RepetitionTime:")
self.__tr = qt.QDoubleSpinBox()
self.__tr.value = 1
dummyFormLayout.addRow(label, self.__tr)
label = qt.QLabel("FlipAngle:")
self.__fa = qt.QDoubleSpinBox()
self.__fa.value = 1
dummyFormLayout.addRow(label, self.__fa)
importButton = qt.QPushButton("Import")
importButton.toolTip = "Import the contents of the directory as a MultiVolume"
self.layout.addWidget(importButton)
importButton.connect("clicked(bool)", self.onImportButtonClicked)
self.__status = qt.QLabel("Status: Idle")
self.layout.addWidget(self.__status)
# Add vertical spacer
self.layout.addStretch(1)
def setup(self):
w = qt.QWidget();
layout = qt.QGridLayout();
w.setLayout(layout);
self.layout.addWidget(w);
w.show();
self.layout = layout;
####################IMPORTAR VOLUMEN 4D#################################################3
### Se crea la sección para cargar el volumen 4D en una pestaña desplegable
importDataCollapsibleButton = ctk.ctkCollapsibleButton()
importDataCollapsibleButton.text = "Import Data"
self.layout.addWidget(importDataCollapsibleButton)
importDataFormLayout = qt.QFormLayout(importDataCollapsibleButton)
#### Crear desplegable para seleccionar dirección del volumen
self.__fDialog = ctk.ctkDirectoryButton()
self.__fDialog.caption = 'Input directory'
importDataFormLayout.addRow('Input directory:', self.__fDialog)
###Selector de volumen donde se guardara el volumen de la direccion
self.outputSelector = slicer.qMRMLNodeComboBox()
self.outputSelector.nodeTypes = ['vtkMRMLMultiVolumeNode']
self.outputSelector.addEnabled = True # Se habilita la posibildad al usuario de crear un nuevo nodo con este widget
self.outputSelector.removeEnabled = False # Se le quita al usuario la posibilidad de eliminar el nodo seleccionado en ese momento
self.outputSelector.setMRMLScene(slicer.mrmlScene)
importDataFormLayout.addRow("Output node:", self.outputSelector)
self.parent.connect('mrmlSceneChanged(vtkMRMLScene*)', self.outputSelector, 'setMRMLScene(vtkMRMLScene*)')
### Parametros avanzados
self.__dicomTag = qt.QLineEdit()
self.__dicomTag.text = 'NA'
importDataFormLayout.addRow('Frame identifying DICOM tag:', self.__dicomTag)
self.__veLabel = qt.QLineEdit()
self.__veLabel.text = 'na'
importDataFormLayout.addRow('Frame identifying units:', self.__veLabel)
self.__veInitial = qt.QDoubleSpinBox()
self.__veInitial.value = 0
importDataFormLayout.addRow('Initial value:', self.__veInitial)
self.__veStep = qt.QDoubleSpinBox()
self.__veStep.value = 1
importDataFormLayout.addRow('Step:', self.__veStep)
self.__te = qt.QDoubleSpinBox()
self.__te.value = 1
importDataFormLayout.addRow('EchoTime:', self.__te)
self.__tr = qt.QDoubleSpinBox()
self.__tr.value = 1
importDataFormLayout.addRow('RepetitionTime:', self.__tr)
self.__fa = qt.QDoubleSpinBox()
self.__fa.value = 1
importDataFormLayout.addRow('FlipAngle:', self.__fa)
# Botón de importar
self.buttonImport = qt.QPushButton("Import")
self.buttonImport.toolTip = "Run the algorithm."
##self.buttonImport.enabled = True
importDataFormLayout.addRow(" ", self.buttonImport)
self.buttonImport.connect('clicked(bool)', self.importFunction)
##self.inputSelector.connect("currentNodeChanged(vtkMRMLNode*)", self.onSelect)
################################### PARÁMETROS DE PROCESAMIENTO#################################################
## # Se crea la sección para seleccionar parámetros el volumen 4D en una pestaña desplegable
parametersCollapsibleButton = ctk.ctkCollapsibleButton()
parametersCollapsibleButton.text = "Parameters"
self.layout.addWidget(parametersCollapsibleButton)
parametersFormLayout = qt.QFormLayout(parametersCollapsibleButton)
self.inputSelector = slicer.qMRMLNodeComboBox()
self.inputSelector.nodeTypes = ["vtkMRMLMultiVolumeNode"]
self.inputSelector.selectNodeUponCreation = True
self.inputSelector.addEnabled = True
self.inputSelector.removeEnabled = False
self.inputSelector.noneEnabled = True
self.inputSelector.showHidden = False
self.inputSelector.showChildNodeTypes = False
self.inputSelector.setMRMLScene( slicer.mrmlScene )
self.inputSelector.setToolTip( "Pick the input to the algorithm." )
parametersFormLayout.addRow("Volumen 4D: ", self.inputSelector)
self.parent.connect('mrmlSceneChanged(vtkMRMLScene*)', self.inputSelector, 'setMRMLScene(vtkMRMLScene*)')
##########################PROCESAMIENTO##########################################################################
## # Se crea la sección para seleccionar procesamiento del volumen 4D en una pestaña desplegable
processingCollapsibleButton = ctk.ctkCollapsibleButton()
processingCollapsibleButton.text = "Processing"
self.layout.addWidget(processingCollapsibleButton)
processingFormLayout = qt.QFormLayout(processingCollapsibleButton)
# Botón de Segmentación
#Este botón solo se activa si el multivolumen ha sido seleccionado en la
#ventana desplegable de Volumen 4D. Al presionarlo, el algoritmo
#realiza el registro de los diferentes volumenes en el volumen 4D
self.buttonSegmentation = qt.QPushButton("Segmentation")
self.buttonSegmentation.toolTip = "Run the algorithm."
self.buttonSegmentation.enabled = True
processingFormLayout.addRow(" ", self.buttonSegmentation)
# Botón de modelo 3D
#Este botón solo se activa si el multivolumen ha sido seleccionado en la
#ventana desplegable de Volumen 4D. Al presionarlo, el algoritmo
#realiza el registro de los diferentes volumenes en el volumen 4D
self.buttonModel = qt.QPushButton("Show 3D model")
self.buttonModel.toolTip = "Run the algorithm."
self.buttonModel.enabled = True
processingFormLayout.addRow(" ",self.buttonModel)
########################################CURVAS#######################################################
## # Se crea la sección para seleccionar curvas del volumen 4D en una pestaña desplegable
curvesCollapsibleButton = ctk.ctkCollapsibleButton()
curvesCollapsibleButton.text = "Curves"
self.layout.addWidget(curvesCollapsibleButton)
curvesFormLayout = qt.QFormLayout(curvesCollapsibleButton)
# Botón de generación de curvas
#Este botón solo se activa si el multivolumen ha sido seleccionado en la
#ventana desplegable de Volumen 4D. Al presionarlo, el algoritmo
#realiza el registro de los diferentes volumenes en el volumen 4D
self.buttonCurves = qt.QPushButton("Generate curves")
self.buttonCurves.toolTip = "Run the algorithm."
self.buttonCurves.enabled = True
curvesFormLayout.addRow(" ",self.buttonCurves)
def setup(self):
ScriptedLoadableModuleWidget.setup(self)
# Instantiate and connect widgets ...
if not NUMPY_AVAILABLE:
label = qt.QLabel(
'The module is not available due to missing Numpy package.')
self.layout.addWidget(label)
label = qt.QLabel(
'You can seek help by contacting 3D Slicer user list: [email protected]'
)
self.layout.addWidget(label)
# Add vertical spacer
self.layout.addStretch(1)
return
# Collapsible button
dummyCollapsibleButton = ctk.ctkCollapsibleButton()
dummyCollapsibleButton.text = "Basic settings"
self.layout.addWidget(dummyCollapsibleButton)
dummyFormLayout = qt.QFormLayout(dummyCollapsibleButton)
# add input directory selector
label = qt.QLabel('Input directory:')
self.__fDialog = ctk.ctkDirectoryButton()
self.__fDialog.caption = 'Input directory'
dummyFormLayout.addRow(label, self.__fDialog)
label = qt.QLabel('Output node:')
self.__mvSelector = slicer.qMRMLNodeComboBox()
self.__mvSelector.nodeTypes = ['vtkMRMLMultiVolumeNode']
self.__mvSelector.setMRMLScene(slicer.mrmlScene)
self.__mvSelector.connect('mrmlSceneChanged(vtkMRMLScene*)',
self.onMRMLSceneChanged)
self.__mvSelector.addEnabled = 1
dummyFormLayout.addRow(label, self.__mvSelector)
# Collapsible button
dummyCollapsibleButton = ctk.ctkCollapsibleButton()
dummyCollapsibleButton.text = "Advanced settings"
dummyCollapsibleButton.collapsed = 1
self.layout.addWidget(dummyCollapsibleButton)
dummyFormLayout = qt.QFormLayout(dummyCollapsibleButton)
self.__advancedFrame = dummyCollapsibleButton
label = qt.QLabel('Frame identifying DICOM tag (if known):')
self.__dicomTag = qt.QLineEdit()
self.__dicomTag.text = 'NA'
dummyFormLayout.addRow(label, self.__dicomTag)
label = qt.QLabel('Frame identifying units:')
self.__veLabel = qt.QLineEdit()
self.__veLabel.text = 'na'
dummyFormLayout.addRow(label, self.__veLabel)
label = qt.QLabel('Initial value:')
self.__veInitial = qt.QDoubleSpinBox()
self.__veInitial.value = 0
dummyFormLayout.addRow(label, self.__veInitial)
label = qt.QLabel('Step:')
self.__veStep = qt.QDoubleSpinBox()
self.__veStep.value = 1
dummyFormLayout.addRow(label, self.__veStep)
label = qt.QLabel('EchoTime:')
self.__te = qt.QDoubleSpinBox()
self.__te.value = 1
dummyFormLayout.addRow(label, self.__te)
label = qt.QLabel('RepetitionTime:')
self.__tr = qt.QDoubleSpinBox()
self.__tr.value = 1
dummyFormLayout.addRow(label, self.__tr)
label = qt.QLabel('FlipAngle:')
self.__fa = qt.QDoubleSpinBox()
self.__fa.value = 1
dummyFormLayout.addRow(label, self.__fa)
importButton = qt.QPushButton("Import")
importButton.toolTip = "Import the contents of the directory as a MultiVolume"
self.layout.addWidget(importButton)
importButton.connect('clicked(bool)', self.onImportButtonClicked)
self.__status = qt.QLabel('Status: Idle')
self.layout.addWidget(self.__status)
# Add vertical spacer
self.layout.addStretch(1)
def setup(self):
"""Init the widget """
self.modulePath = SlicerUtil.getModuleFolder("CIP_GetImage")
self.resourcesPath = os.path.join(self.modulePath, "CIP_GetImage_Resources")
self.StudyId = ""
self.logic = CIP_GetImageLogic(self.modulePath)
# Widget to load cases faster
self.loadSaveDatabuttonsWidget = CIPUI.LoadSaveDataWidget(parentWidget=self.parent)
self.loadSaveDatabuttonsWidget.setup(moduleName="CIP_GetImage")
#
# Obligatory parameters area
#
parametersCollapsibleButton = ctk.ctkCollapsibleButton()
parametersCollapsibleButton.text = "Image data"
self.layout.addWidget(parametersCollapsibleButton)
parametersFormLayout = qt.QFormLayout(parametersCollapsibleButton)
# Study radio buttons
label = qt.QLabel()
label.text = "Select the study:"
parametersFormLayout.addRow(label)
self.rbgStudy=qt.QButtonGroup()
for key in self.studyIds:
rbStudyid = qt.QRadioButton(key)
self.rbgStudy.addButton(rbStudyid)
parametersFormLayout.addWidget(rbStudyid)
self.txtOtherStudy = qt.QLineEdit()
self.txtOtherStudy.hide()
parametersFormLayout.addWidget(self.txtOtherStudy)
# Case id
self.txtCaseId = qt.QLineEdit()
parametersFormLayout.addRow("Case ID ", self.txtCaseId)
# Image types
label = qt.QLabel()
label.text = "Select the images that you want to load:"
parametersFormLayout.addRow(label)
self.cbsImageTypes = []
for key in self.imageTypes:
check = qt.QCheckBox()
check.checked = True
check.setText(key)
parametersFormLayout.addWidget(check)
self.cbsImageTypes.append(check)
# Label maps
label = qt.QLabel()
label.text = "Select the label maps that you want to load:"
parametersFormLayout.addRow(label)
# Labelmap types checkboxes
self.cbsLabelMapTypes = []
for key in self.labelMapTypes:
check = qt.QCheckBox()
check.setText(key)
check.checked = self.labelMapTypes[key][0]
parametersFormLayout.addWidget(check)
self.cbsLabelMapTypes.append(check)
# Load image Button
self.downloadButton = qt.QPushButton("Download")
self.downloadButton.toolTip = "Load the image"
#self.downloadButton.enabled = False
self.downloadButton.setStyleSheet("background-color: green; font-weight:bold; color:white" )
parametersFormLayout.addRow(self.downloadButton)
self.downloadButton.connect('clicked (bool)', self.onDownloadButton)
# Information message
self.lblDownloading = qt.QLabel()
self.lblDownloading.text = "Downloading images. Please wait..."
self.lblDownloading.hide()
parametersFormLayout.addRow(self.lblDownloading)
#
# Optional Parameters
#
optionalParametersCollapsibleButton = ctk.ctkCollapsibleButton()
optionalParametersCollapsibleButton.text = "Optional parameters"
self.layout.addWidget(optionalParametersCollapsibleButton)
optionalParametersFormLayout = qt.QFormLayout(optionalParametersCollapsibleButton)
# Local storage (Slicer temporary path)
self.localStoragePath = "{0}/CIP".format(slicer.app.temporaryPath)
if not os.path.exists(self.localStoragePath):
os.makedirs(self.localStoragePath)
# Make sure that everybody has write permissions (sometimes there are problems because of umask)
os.chmod(self.localStoragePath, 0777)
self.storagePathButton = ctk.ctkDirectoryButton()
self.storagePathButton.directory = self.localStoragePath
optionalParametersFormLayout.addRow("Local directory: ", self.storagePathButton)
# Connection type (SSH, "normal")
label = qt.QLabel()
label.text = "Connection type:"
optionalParametersFormLayout.addRow(label)
self.rbgConnectionType=qt.QButtonGroup()
self.rbSSH = qt.QRadioButton("SSH (secure connection)")
self.rbSSH.setChecked(True)
self.rbgConnectionType.addButton(self.rbSSH)
optionalParametersFormLayout.addWidget(self.rbSSH)
self.rbCP = qt.QRadioButton("Common")
self.rbgConnectionType.addButton(self.rbCP)
optionalParametersFormLayout.addWidget(self.rbCP)
# SSH Server login
self.txtServer = qt.QLineEdit()
s = SlicerUtil.settingGetOrSetDefault("CIP_GetImage", "server", "This is your ssh user and server. Example: [email protected]")
self.txtServer.text = s # This is your ssh user and server. Example: [email protected]"
optionalParametersFormLayout.addRow("Server:", self.txtServer)
# Server root path
self.txtServerpath = qt.QLineEdit()
s = SlicerUtil.settingGetOrSetDefault("CIP_GetImage", "serverRootPath", "This is your root path to search for files. Ex: /Cases/Processed")
self.txtServerpath.text = s # This is your root path to search for files. Ex: /Cases/Processed
optionalParametersFormLayout.addRow("Server root path:", self.txtServerpath)
# SSH Private key
self.txtPrivateKeySSH = qt.QLineEdit()
s = SlicerUtil.settingGetOrSetDefault("CIP_GetImage", "sshKey", "")
self.txtPrivateKeySSH.text = s # this is the full path to your ssh key if you need it. Be aware of Unix/Windows comaptibility (hint: use os.path.join)
# Please notice that you won't need a SSH key if your computer already has one locally installed"
optionalParametersFormLayout.addRow("SSH private key (leave blank for computer's default): ", self.txtPrivateKeySSH)
# Cache mode
self.cbCacheMode = qt.QCheckBox("Cache mode activated")
self.cbCacheMode.setChecked(True) # Cache mode is activated by default
optionalParametersFormLayout.addRow("", self.cbCacheMode)
# Clean cache Button
self.cleanCacheButton = qt.QPushButton("Clean cache")
self.cleanCacheButton.toolTip = "Remove all the local cached files"
optionalParametersFormLayout.addRow(self.cleanCacheButton)
optionalParametersCollapsibleButton.collapsed = True
if SlicerUtil.IsDevelopment:
# reload button
self.reloadButton = qt.QPushButton("Reload (just development)")
self.reloadButton.toolTip = "Reload this module (for development purposes)."
self.reloadButton.name = "Reload"
self.layout.addWidget(self.reloadButton)
self.reloadButton.connect('clicked()', self.onReload)
# Add vertical spacer
self.layout.addStretch(1)
# Connections
self.rbgStudy.connect("buttonClicked (QAbstractButton*)", self.onRbStudyClicked)
self.txtOtherStudy.connect("textEdited (QString)", self.onTxtOtherStudyEdited)
self.rbgConnectionType.connect("buttonClicked (QAbstractButton*)", self.onRbgConnectionType)
self.storagePathButton.connect("directorySelected(QString)", self.onTmpDirChanged)
self.cleanCacheButton.connect('clicked (bool)', self.onCleanCacheButtonClicked)
def setup(self):
ScriptedLoadableModuleWidget.setup(self)
# Instantiate and connect widgets ...
### Parameters Area
inputCollapsibleButton = ctk.ctkCollapsibleButton()
inputCollapsibleButton.text = "Input"
self.layout.addWidget(inputCollapsibleButton)
# Layout within the dummy collapsible button
inputFormLayout = qt.QFormLayout(inputCollapsibleButton)
# fixed landmarks (mrml input)
self.fixedLandmarks = slicer.qMRMLNodeComboBox()
self.fixedLandmarks.nodeTypes = ["vtkMRMLMarkupsFiducialNode"]
self.fixedLandmarks.selectNodeUponCreation = True
self.fixedLandmarks.addEnabled = False
self.fixedLandmarks.removeEnabled = False
self.fixedLandmarks.noneEnabled = True
self.fixedLandmarks.showHidden = False
self.fixedLandmarks.renameEnabled = True
self.fixedLandmarks.setMRMLScene(slicer.mrmlScene)
self.fixedLandmarks.setToolTip("Landmarks on fixed image.")
inputFormLayout.addRow("Fixed landmarks: ", self.fixedLandmarks)
# fixed landmarks (directory input)
self.fixedLandmarksDirectory = ctk.ctkDirectoryButton()
self.fixedLandmarksDirectory.directory = qt.QDir.homePath()
inputFormLayout.addRow("", self.fixedLandmarksDirectory)
# moving landmarks (mrml input)
self.movingLandmarks = slicer.qMRMLNodeComboBox()
self.movingLandmarks.nodeTypes = ["vtkMRMLMarkupsFiducialNode"]
self.movingLandmarks.selectNodeUponCreation = True
self.movingLandmarks.addEnabled = False
self.movingLandmarks.removeEnabled = False
self.movingLandmarks.noneEnabled = True
self.movingLandmarks.showHidden = False
self.movingLandmarks.showChildNodeTypes = False
self.movingLandmarks.setMRMLScene(slicer.mrmlScene)
self.movingLandmarks.setToolTip("Landmarks on moving image.")
inputFormLayout.addRow("Moving landmarks: ", self.movingLandmarks)
self.view = qt.QTableView()
self.view.sortingEnabled = True
self.parent.layout().addWidget(self.view)
# moving landmarks (directory input)
self.movingLandmarksDirectory = ctk.ctkDirectoryButton()
self.movingLandmarksDirectory.directory = qt.QDir.homePath()
inputFormLayout.addRow("", self.movingLandmarksDirectory)
# Apply Button
self.applyButton = qt.QPushButton("Apply")
self.applyButton.toolTip = "Run the algorithm."
self.applyButton.enabled = True
self.layout.addWidget(self.applyButton)
### Output Area
outputCollapsibleButton = ctk.ctkCollapsibleButton()
outputCollapsibleButton.text = "Output statistics"
self.layout.addWidget(outputCollapsibleButton)
# Layout within the dummy collapsible button
outputFormLayout = qt.QFormLayout(outputCollapsibleButton)
# output statistics
buttonLayout = qt.QHBoxLayout()
self.averageError = qt.QLineEdit()
self.averageErrorValue = 1
self.averageError.setToolTip("Average landmark separation")
buttonLayout.addWidget(self.averageError)
outputFormLayout.addRow("Average error:", buttonLayout)
buttonLayout = qt.QHBoxLayout()
self.Variance = qt.QLineEdit()
self.VarianceValue = 1
self.Variance.setToolTip("Variance")
buttonLayout.addWidget(self.Variance)
outputFormLayout.addRow("Variance:", buttonLayout)
buttonLayout = qt.QHBoxLayout()
self.stDev = qt.QLineEdit()
self.stDevValue = 1
self.stDev.setToolTip("Standard deviation")
buttonLayout.addWidget(self.stDev)
outputFormLayout.addRow("Standard deviation:", buttonLayout)
# model and view for stats table
self.view = qt.QTableView()
self.view.sortingEnabled = True
self.parent.layout().addWidget(self.view)
# connections
self.fixedLandmarks.connect("currentNodeChanged(vtkMRMLNode*)", self.onFixedLandmarksSelect)
self.movingLandmarks.connect("currentNodeChanged(vtkMRMLNode*)", self.onMovingLandmarksSelect)
self.applyButton.connect("clicked(bool)", self.onMismatchErrorApply)
def setup(self):
ScriptedLoadableModuleWidget.setup(self)
# Instantiate and connect widgets ...
#
# Parameters Area
#
parametersCollapsibleButton = ctk.ctkCollapsibleButton()
parametersCollapsibleButton.text = "Parameters"
self.layout.addWidget(parametersCollapsibleButton)
# Layout within the dummy collapsible button
parametersFormLayout = qt.QFormLayout(parametersCollapsibleButton)
#
# input volume selector - CT Image
#
self.inputSelectorCTImage = slicer.qMRMLNodeComboBox()
self.inputSelectorCTImage.nodeTypes = ["vtkMRMLScalarVolumeNode"]
self.inputSelectorCTImage.selectNodeUponCreation = True
self.inputSelectorCTImage.addEnabled = False
self.inputSelectorCTImage.removeEnabled = False
self.inputSelectorCTImage.noneEnabled = False
self.inputSelectorCTImage.showHidden = False
self.inputSelectorCTImage.showChildNodeTypes = False
self.inputSelectorCTImage.setMRMLScene(slicer.mrmlScene)
self.inputSelectorCTImage.setToolTip(
"Pick the input to the algorithm.")
parametersFormLayout.addRow("Reference CT Image: ",
self.inputSelectorCTImage)
#
# input volume selector - Spheres label
#
self.inputSelectorMaskImg = slicer.qMRMLNodeComboBox()
self.inputSelectorMaskImg.nodeTypes = ["vtkMRMLLabelMapVolumeNode"]
self.inputSelectorMaskImg.selectNodeUponCreation = True
self.inputSelectorMaskImg.addEnabled = False
self.inputSelectorMaskImg.removeEnabled = False
self.inputSelectorMaskImg.noneEnabled = False
self.inputSelectorMaskImg.showHidden = False
self.inputSelectorMaskImg.showChildNodeTypes = False
self.inputSelectorMaskImg.setMRMLScene(slicer.mrmlScene)
self.inputSelectorMaskImg.setToolTip(
"Pick the input to the algorithm.")
parametersFormLayout.addRow("Spheres label (CT space): ",
self.inputSelectorMaskImg)
#
# input volume selector - MRI Image
#
self.inputSelectorMRImage = slicer.qMRMLNodeComboBox()
self.inputSelectorMRImage.nodeTypes = ["vtkMRMLScalarVolumeNode"]
self.inputSelectorMRImage.selectNodeUponCreation = True
self.inputSelectorMRImage.addEnabled = False
self.inputSelectorMRImage.removeEnabled = False
self.inputSelectorMRImage.noneEnabled = False
self.inputSelectorMRImage.showHidden = False
self.inputSelectorMRImage.showChildNodeTypes = False
self.inputSelectorMRImage.setMRMLScene(slicer.mrmlScene)
self.inputSelectorMRImage.setToolTip(
"Pick the input to the algorithm.")
parametersFormLayout.addRow("MR Image to analyse: ",
self.inputSelectorMRImage)
#
# Output director Button
#
label = qt.QLabel('Directory output:')
self.OutputDirectory = ctk.ctkDirectoryButton()
self.OutputDirectory.directory = u'//s-grp/grp/Imagerie/CQ/IRM/Resultats_mensuel'
self.OutputDirectory.caption = 'Output directory'
parametersFormLayout.addRow(label, self.OutputDirectory)
#
# Registration Button
#
self.RegistrationButton = qt.QPushButton("1) Registration")
self.RegistrationButton.toolTip = "Run the algorithm."
self.RegistrationButton.enabled = False
parametersFormLayout.addRow(self.RegistrationButton)
#
# Geometric distorsion Button
#
self.GeoDistorsionButton = qt.QPushButton(
"2A) Geometric distorsion analysis")
self.GeoDistorsionButton.toolTip = "Run the geometric distorsion algorithm."
self.GeoDistorsionButton.enabled = False
parametersFormLayout.addRow(self.GeoDistorsionButton)
#
# input volume selector - geometric distorsion result volume
#
self.inputSelectorGeoDistorsionResult = slicer.qMRMLNodeComboBox()
self.inputSelectorGeoDistorsionResult.nodeTypes = [
"vtkMRMLScalarVolumeNode"
]
self.inputSelectorGeoDistorsionResult.selectNodeUponCreation = True
self.inputSelectorGeoDistorsionResult.addEnabled = False
self.inputSelectorGeoDistorsionResult.removeEnabled = False
self.inputSelectorGeoDistorsionResult.noneEnabled = True
self.inputSelectorGeoDistorsionResult.showHidden = False
self.inputSelectorGeoDistorsionResult.showChildNodeTypes = False
self.inputSelectorGeoDistorsionResult.setMRMLScene(slicer.mrmlScene)
self.inputSelectorGeoDistorsionResult.setToolTip(
"Pick the input to the algorithm.")
parametersFormLayout.addRow(
"Geometric distorsion result image (only for testing, let it in none): ",
self.inputSelectorGeoDistorsionResult)
#
# Show 3D Geometric distorsion Button
#
self.Show3DGeoDistorsionButton = qt.QPushButton(
"2B) Show 3D Geometric distorsion results")
self.Show3DGeoDistorsionButton.toolTip = "Run the Show3D algorithm."
self.Show3DGeoDistorsionButton.enabled = True
parametersFormLayout.addRow(self.Show3DGeoDistorsionButton)
#
# SNR Button
#
self.SNRButton = qt.QPushButton("3) Signal to Noise Ratio analysis")
self.SNRButton.toolTip = "Run the SNR algorithm."
self.SNRButton.enabled = True
parametersFormLayout.addRow(self.SNRButton)
#
# Signal Linearity Button
#
self.SignalLinearityButton = qt.QPushButton(
"4) Signal Linearity analysis")
self.SignalLinearityButton.toolTip = "Run the analysis of the mean signal in the principales spheres."
self.SignalLinearityButton.enabled = True
parametersFormLayout.addRow(self.SignalLinearityButton)
# connections
self.RegistrationButton.connect('clicked(bool)',
self.onRegistrationButton)
self.SNRButton.connect('clicked(bool)', self.onSNRButton)
self.SignalLinearityButton.connect('clicked(bool)',
self.onSignalLinearityButton)
self.GeoDistorsionButton.connect('clicked(bool)',
self.onGeoDistorsionButton)
self.Show3DGeoDistorsionButton.connect(
'clicked(bool)', self.onShow3DGeoDistorsionButton)
self.inputSelectorCTImage.connect("currentNodeChanged(vtkMRMLNode*)",
self.onSelect)
self.inputSelectorMaskImg.connect("currentNodeChanged(vtkMRMLNode*)",
self.onSelect)
self.inputSelectorMRImage.connect("currentNodeChanged(vtkMRMLNode*)",
self.onSelect)
self.inputSelectorGeoDistorsionResult.connect(
"currentNodeChanged(vtkMRMLNode*)", self.onSelect)
self.OutputDirectory.connect("Output directory)", self.onSelect)
# Add vertical spacer
self.layout.addStretch(1)
# Refresh regsitration and SNR buttons state
self.onSelect()
def setup(self):
w = qt.QWidget()
layout = qt.QGridLayout()
w.setLayout(layout)
self.layout.addWidget(w)
w.show()
self.layout = layout
####################IMPORTAR VOLUMEN 4D#################################################3
### Se crea la sección para cargar el volumen 4D en una pestaña desplegable
importDataCollapsibleButton = ctk.ctkCollapsibleButton()
importDataCollapsibleButton.text = "Import Data"
self.layout.addWidget(importDataCollapsibleButton)
importDataFormLayout = qt.QFormLayout(importDataCollapsibleButton)
#### Crear desplegable para seleccionar dirección del volumen
self.__fDialog = ctk.ctkDirectoryButton()
self.__fDialog.caption = 'Input directory'
importDataFormLayout.addRow('Input directory:', self.__fDialog)
###Selector de volumen donde se guardara el volumen de la direccion
self.outputSelector = slicer.qMRMLNodeComboBox()
self.outputSelector.nodeTypes = ['vtkMRMLMultiVolumeNode']
self.outputSelector.addEnabled = True # Se habilita la posibildad al usuario de crear un nuevo nodo con este widget
self.outputSelector.removeEnabled = False # Se le quita al usuario la posibilidad de eliminar el nodo seleccionado en ese momento
self.outputSelector.setMRMLScene(slicer.mrmlScene)
importDataFormLayout.addRow("Output node:", self.outputSelector)
self.parent.connect('mrmlSceneChanged(vtkMRMLScene*)',
self.outputSelector, 'setMRMLScene(vtkMRMLScene*)')
### Parametros avanzados
self.__dicomTag = qt.QLineEdit()
self.__dicomTag.text = 'NA'
importDataFormLayout.addRow('Frame identifying DICOM tag:',
self.__dicomTag)
self.__veLabel = qt.QLineEdit()
self.__veLabel.text = 'na'
importDataFormLayout.addRow('Frame identifying units:', self.__veLabel)
self.__veInitial = qt.QDoubleSpinBox()
self.__veInitial.value = 0
importDataFormLayout.addRow('Initial value:', self.__veInitial)
self.__veStep = qt.QDoubleSpinBox()
self.__veStep.value = 1
importDataFormLayout.addRow('Step:', self.__veStep)
self.__te = qt.QDoubleSpinBox()
self.__te.value = 1
importDataFormLayout.addRow('EchoTime:', self.__te)
self.__tr = qt.QDoubleSpinBox()
self.__tr.value = 1
importDataFormLayout.addRow('RepetitionTime:', self.__tr)
self.__fa = qt.QDoubleSpinBox()
self.__fa.value = 1
importDataFormLayout.addRow('FlipAngle:', self.__fa)
# Botón de importar
self.buttonImport = qt.QPushButton("Import")
self.buttonImport.toolTip = "Run the algorithm."
##self.buttonImport.enabled = True
importDataFormLayout.addRow(" ",
self.buttonImport)
self.buttonImport.connect('clicked(bool)', self.importFunction)
##self.inputSelector.connect("currentNodeChanged(vtkMRMLNode*)", self.onSelect)
###########################REGISTRO##########################################
## # Se crea una sección de parámetros en una pestaña desplegable
registerCollapsibleButton = ctk.ctkCollapsibleButton()
registerCollapsibleButton.text = "Register"
self.layout.addWidget(registerCollapsibleButton)
registerFormLayout = qt.QFormLayout(registerCollapsibleButton)
#Se crea una ventana desplegable en la cual se ingresa el volumen 4D de
#entrada que se quiere registrar, este volumen debe ser de tipo
#"vtkMRMLMultiVolumeNode", además si se tienen varios multivolumenes cargados
#se puede elegir entre ellos el que se desea registrar
self.inputRegSelector = slicer.qMRMLNodeComboBox()
self.inputRegSelector.nodeTypes = ["vtkMRMLMultiVolumeNode"]
self.inputRegSelector.selectNodeUponCreation = True
self.inputRegSelector.addEnabled = True
self.inputRegSelector.removeEnabled = False
self.inputRegSelector.noneEnabled = True
self.inputRegSelector.showHidden = False
self.inputRegSelector.showChildNodeTypes = False
self.inputRegSelector.setMRMLScene(slicer.mrmlScene)
self.inputRegSelector.setToolTip("Pick the input to the algorithm.")
registerFormLayout.addRow("Volumen 4D: ", self.inputRegSelector)
self.parent.connect('mrmlSceneChanged(vtkMRMLScene*)',
self.inputRegSelector,
'setMRMLScene(vtkMRMLScene*)')
###Selector de volumen donde se guardara el volumen de la direccion
self.outputRegSelector = slicer.qMRMLNodeComboBox()
self.outputRegSelector.nodeTypes = ['vtkMRMLMultiVolumeNode']
self.outputRegSelector.addEnabled = True # Se habilita la posibildad al usuario de crear un nuevo nodo con este widget
self.outputRegSelector.removeEnabled = False # Se le quita al usuario la posibilidad de eliminar el nodo seleccionado en ese momento
self.outputRegSelector.setMRMLScene(slicer.mrmlScene)
registerFormLayout.addRow("Output node:", self.outputRegSelector)
self.parent.connect('mrmlSceneChanged(vtkMRMLScene*)',
self.outputRegSelector,
'setMRMLScene(vtkMRMLScene*)')
# Botón de Registro
#Este botón solo se activa si el multivolumen ha sido seleccionado en la
#ventana desplegable de Volumen 4D. Al presionarlo, el algoritmo
#realiza el registro de los diferentes volumenes en el volumen 4D
self.applyButton = qt.QPushButton("Registrar")
self.applyButton.toolTip = "Run the algorithm."
self.applyButton.enabled = True
registerFormLayout.addRow(self.applyButton)
# Conexiones necesarias para el algoritmo
#entrega al algoritmo el volumen 4D de entrada y conecta la función del botón
#con la ejecución del registro
self.applyButton.connect('clicked(bool)', self.registrarButton)
def setup(self):
ScriptedLoadableModuleWidget.setup(self)
# Instantiate and connect widgets ...
### Input Area
inputCollapsibleButton = ctk.ctkCollapsibleButton()
inputCollapsibleButton.text = "Input"
self.layout.addWidget(inputCollapsibleButton)
# Layout within the dummy collapsible button
inputFormLayout = qt.QFormLayout(inputCollapsibleButton)
# vf image (mrml input)
self.vfMRMLSelector = slicer.qMRMLNodeComboBox()
self.vfMRMLSelector.nodeTypes = ["vtkMRMLVectorVolumeNode"]
self.vfMRMLSelector.selectNodeUponCreation = True
self.vfMRMLSelector.addEnabled = False
self.vfMRMLSelector.removeEnabled = False
self.vfMRMLSelector.noneEnabled = True
self.vfMRMLSelector.showHidden = False
self.vfMRMLSelector.setMRMLScene( slicer.mrmlScene )
self.vfMRMLSelector.setToolTip( "Pick the input to the algorithm." )
inputFormLayout.addRow("Vector Field image: ", self.vfMRMLSelector)
# variables
self.minJacobianValue = 1
self.maxJacobianValue = 1
# vf image (directory input)
self.vfInputDirectory = ctk.ctkDirectoryButton()
self.vfInputDirectory.directory = qt.QDir.homePath()
inputFormLayout.addRow("Input Directory:", self.vfInputDirectory)
# Fixed image (for geometry info)
self.fixedImage = slicer.qMRMLNodeComboBox()
self.fixedImage.nodeTypes = ["vtkMRMLScalarVolumeNode"]
self.fixedImage.setMRMLScene( slicer.mrmlScene )
self.fixedImage.selectNodeUponCreation = True
self.fixedImage.addEnabled = False
self.fixedImage.renameEnabled = True
self.fixedImage.noneEnabled = True
self.fixedImage.setToolTip( "Output image of Jacobian matrix.vtkSlicerPlastimatchModuleLogicPython" )
inputFormLayout.addRow("Fixed image (for geometry info): ", self.fixedImage)
# Apply Button
self.applyButton = qt.QPushButton("Apply")
self.applyButton.toolTip = "Run the algorithm."
self.applyButton.enabled = True
self.layout.addWidget(self.applyButton)
### Output Area
outputCollapsibleButton = ctk.ctkCollapsibleButton()
outputCollapsibleButton.text = "Output"
self.layout.addWidget(outputCollapsibleButton)
# Layout within the dummy collapsible button
outputFormLayout = qt.QFormLayout(outputCollapsibleButton)
# Jacobian image (mrml output)
self.outputJacobian = slicer.qMRMLNodeComboBox()
self.outputJacobian.nodeTypes = ["vtkMRMLScalarVolumeNode"]
self.outputJacobian.setMRMLScene( slicer.mrmlScene )
self.outputJacobian.addEnabled = True
self.outputJacobian.renameEnabled = True
#self.outputJacobian.layout().addWidget(self.outputSelector)
self.outputJacobian.setToolTip( "Output image of Jacobian matrix.vtkSlicerPlastimatchModuleLogicPython" )
outputFormLayout.addRow("Jacobian image: ", self.outputJacobian)
# output directory selector
# self.outputDirectory = ctk.ctkDirectoryButton()
# self.outputDirectory.directory = qt.QDir.homePath()
# outputFormLayout.addRow("Output Directory: ", self.outputDirectory)
# output statistics
buttonLayout = qt.QHBoxLayout()
self.minJacobian = qt.QLineEdit()
self.minJacobian.setToolTip( "Minimum value of Jacobian matrix" )
buttonLayout.addWidget(self.minJacobian)
outputFormLayout.addRow("Minimum Jacobian:", buttonLayout)
buttonLayout = qt.QHBoxLayout()
self.maxJacobian = qt.QLineEdit()
self.maxJacobian.setToolTip( "Maximum value of Jacobian matrix" )
buttonLayout.addWidget(self.maxJacobian)
outputFormLayout.addRow("Maximum Jacobian:", buttonLayout)
# connections
self.applyButton.connect('clicked(bool)', self.onJacobianApply)
self.outputJacobian.connect("currentNodeChanged(vtkMRMLNode*)", self.onOutputJacobianSelect)
self.fixedImage.connect("currentNodeChanged(vtkMRMLNode*)", self.onFixedImageSelect)
self.vfMRMLSelector.connect("currentNodeChanged(vtkMRMLNode*)", self.onvfMRMLSelect)
# Add vertical spacer
self.layout.addStretch(1)
def setup(self):
# Instantiate and connect widgets ...
# Collapsible button
dummyCollapsibleButton = ctk.ctkCollapsibleButton()
dummyCollapsibleButton.text = "Basic settings"
self.layout.addWidget(dummyCollapsibleButton)
dummyFormLayout = qt.QFormLayout(dummyCollapsibleButton)
# add input directory selector
label = qt.QLabel('Input directory:')
self.__fDialog = ctk.ctkDirectoryButton()
self.__fDialog.caption = 'Input DICOM directory'
dummyFormLayout.addRow(label, self.__fDialog)
label = qt.QLabel('Output node:')
self.__mvSelector = slicer.qMRMLNodeComboBox()
self.__mvSelector.nodeTypes = ['vtkMRMLMultiVolumeNode']
self.__mvSelector.setMRMLScene(slicer.mrmlScene)
self.__mvSelector.connect('mrmlSceneChanged(vtkMRMLScene*)', self.onMRMLSceneChanged)
self.__mvSelector.addEnabled = 1
dummyFormLayout.addRow(label, self.__mvSelector)
label = qt.QLabel('Input data type:')
self.__modeSelector = qt.QComboBox()
# parameter tuples: long title (for the selector), dicom tag, units, short title
self.__processingModes = []
self.__processingModes.append(['DICOM 4D DCE MRI (GE)', '0018|1060', 'ms', 'DCE'])
self.__processingModes.append(['DICOM variable TE MRI (GE)', '0018|0081', 'ms', 'vTE'])
self.__processingModes.append(['DICOM variable FA MRI (GE)', '0018|1314', 'deg', 'vFA'])
self.__processingModes.append(['DICOM variable TR MRI (GE)', '0018|0080', 'ms', 'vTR'])
self.__processingModes.append(['User-defined DICOM', '??', '??', 'MultiVolumeDICOM'])
self.__processingModes.append(['User-defined non-DICOM', 'N/A', '??', 'MultiVolume'])
for p in self.__processingModes:
print("Processing mode found: %s" % p)
self.__modeSelector.addItem(p[0])
self.__modeSelector.currentIndex = 0
self.__modeSelector.connect('currentIndexChanged(int)', self.onProcessingModeChanged)
dummyFormLayout.addRow(label, self.__modeSelector)
# Collapsible button
dummyCollapsibleButton = ctk.ctkCollapsibleButton()
dummyCollapsibleButton.text = "Advanced settings"
dummyCollapsibleButton.collapsed = 1
self.layout.addWidget(dummyCollapsibleButton)
dummyFormLayout = qt.QFormLayout(dummyCollapsibleButton)
self.__advancedFrame = dummyCollapsibleButton
# label name and values
label = qt.QLabel('DICOM tag:')
label.toolTip = 'DICOM tag used to separate individual volumes in the series'
self.__dicomTag = qt.QLineEdit()
self.__dicomTag.text = ""
dummyFormLayout.addRow(label, self.__dicomTag)
label = qt.QLabel('Frame identifying units:')
self.__veLabel = qt.QLineEdit()
dummyFormLayout.addRow(label, self.__veLabel)
label = qt.QLabel('Initial value:')
self.__veInitial = qt.QDoubleSpinBox()
self.__veInitial.value = 0
dummyFormLayout.addRow(label, self.__veInitial)
label = qt.QLabel('Step:')
self.__veStep = qt.QDoubleSpinBox()
self.__veStep.value = 1
dummyFormLayout.addRow(label, self.__veStep)
importButton = qt.QPushButton("Import")
importButton.toolTip = "Import the contents of the DICOM directory as a MultiVolume"
self.layout.addWidget(importButton)
importButton.connect('clicked(bool)', self.onImportButtonClicked)
self.__status = qt.QLabel('Status: Idle')
self.layout.addWidget(self.__status)
# Add vertical spacer
self.layout.addStretch(1)
def setup(self):
# Instantiate and connect widgets ...
#
# Reload and Test area
#
reloadCollapsibleButton = ctk.ctkCollapsibleButton()
reloadCollapsibleButton.text = "Reload && Test"
self.layout.addWidget(reloadCollapsibleButton)
reloadFormLayout = qt.QFormLayout(reloadCollapsibleButton)
# reload button
# (use this during development, but remove it when delivering
# your module to users)
self.reloadButton = qt.QPushButton("Reload")
self.reloadButton.toolTip = "Reload this module."
self.reloadButton.name = "Freehand3DUltrasound Reload"
reloadFormLayout.addWidget(self.reloadButton)
self.reloadButton.connect('clicked()', self.onReload)
# reload and test button
# (use this during development, but remove it when delivering
# your module to users)
self.reloadAndTestButton = qt.QPushButton("Reload and Test")
self.reloadAndTestButton.toolTip = "Reload this module and then run the self tests."
reloadFormLayout.addWidget(self.reloadAndTestButton)
self.reloadAndTestButton.connect('clicked()', self.onReloadAndTest)
# IGTLink Connector
connectorCollapsibleButton = ctk.ctkCollapsibleButton()
connectorCollapsibleButton.text = "OpenIGTLink Settings"
self.layout.addWidget(connectorCollapsibleButton)
self.parametersVBoxLayout = qt.QVBoxLayout(connectorCollapsibleButton)
self.connectorWidget = qt.QWidget()
self.parametersVBoxLayout.addWidget(self.connectorWidget)
self.connectorLayout = qt.QFormLayout(self.connectorWidget)
self.linkInputSelector = slicer.qMRMLNodeComboBox()
self.linkInputSelector.nodeTypes = ( ("vtkMRMLIGTLConnectorNode"), "" )
self.linkInputSelector.selectNodeUponCreation = True
self.linkInputSelector.addEnabled = True
self.linkInputSelector.removeEnabled = True
self.linkInputSelector.noneEnabled = False
self.linkInputSelector.showHidden = False
self.linkInputSelector.showChildNodeTypes = False
self.linkInputSelector.setMRMLScene( slicer.mrmlScene )
self.linkInputSelector.setToolTip( "Pick connector node" )
self.connectorLayout.addRow("PlusServer Connector: ", self.linkInputSelector)
self.igtLinkWidget = qt.QWidget()
self.igtLinkWidget.enabled = False
self.parametersVBoxLayout.addWidget(self.igtLinkWidget)
self.igtLinkHBoxLayout = qt.QHBoxLayout(self.igtLinkWidget)
self.hostNameLabel = qt.QLabel("Host Name:")
self.igtLinkHBoxLayout.addWidget(self.hostNameLabel)
self.hostNameLineEdit = qt.QLineEdit("localhost")
self.igtLinkHBoxLayout.addWidget(self.hostNameLineEdit)
self.portLabel = qt.QLabel(" Port:")
self.igtLinkHBoxLayout.addWidget(self.portLabel)
self.portLineEdit = qt.QLineEdit("18944")
self.portLineEdit.setMaximumWidth(60)
self.igtLinkHBoxLayout.addWidget(self.portLineEdit)
self.statusLabel = qt.QLabel(" Active:")
self.igtLinkHBoxLayout.addWidget(self.statusLabel)
self.linkStatusCheckBox= qt.QCheckBox(" ")
self.igtLinkHBoxLayout.addWidget(self.linkStatusCheckBox)
#
# Reconstruction Area
#
reconstructionCollapsibleButton = ctk.ctkCollapsibleButton()
reconstructionCollapsibleButton.text = "Record and Reconstruction"
self.layout.addWidget(reconstructionCollapsibleButton)
# Layout within the dummy collapsible button
reconstructionVBoxLayout = qt.QVBoxLayout(reconstructionCollapsibleButton)
# Input Tracker node selector
#
inputImageTrackerWidget = qt.QWidget()
reconstructionVBoxLayout.addWidget(inputImageTrackerWidget)
inputImageTrackerQFormLayout = qt.QFormLayout(inputImageTrackerWidget)
self.inputImageTrackerNodeSelector = slicer.qMRMLNodeComboBox()
self.inputImageTrackerNodeSelector.nodeTypes = ['vtkMRMLLinearTransformNode']
self.inputImageTrackerNodeSelector.selectNodeUponCreation = True
self.inputImageTrackerNodeSelector.addEnabled = False
self.inputImageTrackerNodeSelector.removeEnabled = False
self.inputImageTrackerNodeSelector.noneEnabled = True
self.inputImageTrackerNodeSelector.showHidden = False
self.inputImageTrackerNodeSelector.showChildNodeTypes = False
self.inputImageTrackerNodeSelector.setMRMLScene( slicer.mrmlScene )
self.inputImageTrackerNodeSelector.objectName = 'inputImageTrackerNodeSelector'
self.inputImageTrackerNodeSelector.toolTip = "Select the tracker linear transform node."
#inputImageTrackerNodeSelector.connect('currentNodeChanged(bool)', self.enableOrDisableCreateButton)
inputImageTrackerQFormLayout.addRow( 'Image Transform Node:',self.inputImageTrackerNodeSelector)
#self.parent.connect('mrmlSceneChanged(vtkMRMLScene*)', inputImageTrackerNodeSelector, 'setMRMLScene(vtkMRMLScene*)')
#
# ROI Node Selector
#
self.inputROINodeSelector = slicer.qMRMLNodeComboBox()
self.inputROINodeSelector.enabled = True
self.inputROINodeSelector.addEnabled = True
self.inputROINodeSelector.removeEnabled = True
self.inputROINodeSelector.setMRMLScene( slicer.mrmlScene)
self.inputROINodeSelector.nodeTypes = ['vtkMRMLAnnotationROINode']
inputImageTrackerQFormLayout.addRow( 'Reconstruction ROI:',self.inputROINodeSelector)
#
# Icons
#
self.statusRedIcon = qt.QIcon(self.freehand3DUltrasoundDirectoryPath+'/Resources/Icons/icon_DotRed.png')
self.statusGreenIcon = qt.QIcon(self.freehand3DUltrasoundDirectoryPath+'/Resources/Icons/icon_DotGreen.png')
self.connectIcon = qt.QIcon(self.freehand3DUltrasoundDirectoryPath+'/Resources/Icons/connect.png')
self.disconnectIcon = qt.QIcon(self.freehand3DUltrasoundDirectoryPath+'/Resources/Icons/disconnect.png')
self.recordIcon = qt.QIcon(self.freehand3DUltrasoundDirectoryPath+'/Resources/Icons/icon_Record.png')
self.pauseIcon = qt.QIcon(self.freehand3DUltrasoundDirectoryPath+'/Resources/Icons/icon_pause.png')
self.stopIcon = qt.QIcon(self.freehand3DUltrasoundDirectoryPath+'/Resources/Icons/icon_stop.png')
self.snapshotIcon = qt.QIcon(self.freehand3DUltrasoundDirectoryPath+'/Resources/Icons/snapshot.png')
self.deleteIcon= qt.QIcon(self.freehand3DUltrasoundDirectoryPath+'/Resources/Icons/delete.png')
#
# reconstruction and recording buttons
self.recordAndReconstructionWidget = qt.QWidget()
self.recordAndReconstructionWidget.enabled = False
reconstructionVBoxLayout.addWidget(self.recordAndReconstructionWidget)
recordAndReconstructionHBoxLayout = qt.QHBoxLayout(self.recordAndReconstructionWidget)
self.startButton = qt.QPushButton("")
buttonSize = 35
iconSize = qt.QSize(25,25)
#self.startButton.toolTip = "Tracker Status"
self.startButton.enabled = True
self.startButton.setIcon(self.recordIcon)
self.startButton.checkable = True
self.startButton.setMinimumHeight(buttonSize)
self.startButton.setIconSize(iconSize)
self.startButton.setMinimumWidth(buttonSize)
self.startButton.setMaximumWidth(buttonSize)
recordAndReconstructionHBoxLayout.addWidget(self.startButton)
self.pauseButton = qt.QPushButton("")
#self.pauseButton.toolTip = "Tracker Status"
self.pauseButton.enabled = False
self.pauseButton.checkable = True
self.pauseButton.setIcon(self.pauseIcon)
self.pauseButton.setMinimumHeight(buttonSize)
self.pauseButton.setIconSize(iconSize)
self.pauseButton.setMinimumWidth(buttonSize)
self.pauseButton.setMaximumWidth(buttonSize)
recordAndReconstructionHBoxLayout.addWidget(self.pauseButton)
self.snapshotButton = qt.QPushButton("")
#self.snapshotButton.toolTip = "Tracker Status"
self.snapshotButton.enabled = False
self.snapshotButton.setIcon(self.snapshotIcon)
recordAndReconstructionHBoxLayout.addWidget(self.snapshotButton)
self.snapshotButton.setMinimumHeight(buttonSize)
self.snapshotButton.setIconSize(iconSize)
self.snapshotButton.setMinimumWidth(buttonSize)
self.snapshotButton.setMaximumWidth(buttonSize)
self.deleteButton = qt.QPushButton("")
#self.deleteButton.toolTip = "Tracker Status"
self.deleteButton.enabled = False
self.deleteButton.setIcon(self.deleteIcon)
self.deleteButton.setMinimumHeight(buttonSize)
self.deleteButton.setIconSize(iconSize)
self.deleteButton.setMinimumWidth(buttonSize)
self.deleteButton.setMaximumWidth(buttonSize)
recordAndReconstructionHBoxLayout.addWidget(self.deleteButton)
#recordAndReconstructionHBoxLayout.addStretch(1)
self.statusButton = qt.QPushButton("")
#self.startButton.toolTip = "Tracker Status"
self.statusButton.enabled = False
self.statusButton.setIcon(self.disconnectIcon)
self.statusButton.setIconSize(iconSize)
self.statusButton.setMinimumHeight(buttonSize)
self.statusButton.setMaximumWidth(buttonSize)
self.statusButton.setMinimumWidth(buttonSize)
recordAndReconstructionHBoxLayout.addWidget(self.statusButton)
#
# Display Area
#
displayCollapsibleButton = ctk.ctkCollapsibleButton()
displayCollapsibleButton.text = "Display"
self.layout.addWidget(displayCollapsibleButton)
# Layout within the dummy collapsible button
displayVBoxLayout = qt.QVBoxLayout(displayCollapsibleButton)
volumesWidget = qt.QWidget()
displayVBoxLayout.addWidget(volumesWidget)
volumesFormLayout = qt.QFormLayout(volumesWidget)
#
# base volume node selector
#
self.baseVolumeNodeSelector = slicer.qMRMLNodeComboBox()
self.baseVolumeNodeSelector.setMRMLScene( slicer.mrmlScene)
self.baseVolumeNodeSelector.nodeTypes = ['vtkMRMLScalarVolumeNode']
volumesFormLayout.addRow( 'Base Volume (MR/CT):',self.baseVolumeNodeSelector)
#
# reconstructed volume node selector
#
self.reconstructedVolumeNodeSelector = slicer.qMRMLNodeComboBox()
self.reconstructedVolumeNodeSelector.setMRMLScene( slicer.mrmlScene)
self.reconstructedVolumeNodeSelector.nodeTypes = ['vtkMRMLScalarVolumeNode']
volumesFormLayout.addRow( 'Reconstructed Volume:',self.reconstructedVolumeNodeSelector)
#
# Pointer Transform Node Selector
#
self.pointerTransformNodeSelector = slicer.qMRMLNodeComboBox()
self.pointerTransformNodeSelector.nodeTypes = ['vtkMRMLLinearTransformNode']
self.pointerTransformNodeSelector.selectNodeUponCreation = True
self.pointerTransformNodeSelector.addEnabled = False
self.pointerTransformNodeSelector.removeEnabled = False
self.pointerTransformNodeSelector.noneEnabled = True
self.pointerTransformNodeSelector.showHidden = False
self.pointerTransformNodeSelector.showChildNodeTypes = False
self.pointerTransformNodeSelector.setMRMLScene( slicer.mrmlScene )
self.pointerTransformNodeSelector.objectName = 'pointerTransformNodeSelector'
self.pointerTransformNodeSelector.toolTip = "Select the tracker linear transform node."
#pointerTransformNodeSelector.connect('currentNodeChanged(bool)', self.enableOrDisableCreateButton)
volumesFormLayout.addRow( 'Pointer Transform Node:',self.pointerTransformNodeSelector)
#self.parent.connect('mrmlSceneChanged(vtkMRMLScene*)', pointerTransformNodeSelector, 'setMRMLScene(vtkMRMLScene*)')
#
# Display Mode Group Buttons
#
displayModesWidget = qt.QWidget()
displayVBoxLayout.addWidget(displayModesWidget)
displayModesHBoxLayout = qt.QHBoxLayout(displayModesWidget)
displayGroup = qt.QButtonGroup(volumesWidget)
displayModeLabel = qt.QLabel("Display Mode: ")
displayModesHBoxLayout.addWidget(displayModeLabel)
self.mode1RadioButton = qt.QRadioButton("1- Recording")
displayGroup.addButton(self.mode1RadioButton)
self.mode2RadioButton = qt.QRadioButton("2- Pointer")
displayGroup.addButton(self.mode2RadioButton)
self.mode3RadioButton = qt.QRadioButton("3- Reslicing off")
displayGroup.addButton(self.mode3RadioButton)
displayModesHBoxLayout.addWidget(self.mode1RadioButton)
displayModesHBoxLayout.addWidget(self.mode2RadioButton)
displayModesHBoxLayout.addWidget(self.mode3RadioButton)
displayModesHBoxLayout.addStretch(1)
#
# Settings Area
#
self.settingsCollapsibleButton = ctk.ctkCollapsibleButton()
self.settingsCollapsibleButton.text = "Settings"
self.layout.addWidget(self.settingsCollapsibleButton)
# Layout within the dummy collapsible button
settingsVBoxLayout = qt.QVBoxLayout(self.settingsCollapsibleButton)
pathWidget = qt.QWidget()
settingsVBoxLayout.addWidget(pathWidget)
pathFormLayout = qt.QFormLayout(pathWidget)
self.directoryButton = ctk.ctkDirectoryButton()
pathFormLayout.addRow("Output Directory: ", self.directoryButton)
#
# Record and Reconstruction Parameters
#
recordOptionsWidget = qt.QWidget()
settingsVBoxLayout.addWidget(recordOptionsWidget)
recordOptionsHBoxLayout = qt.QHBoxLayout(recordOptionsWidget)
recordOptionsLabel = qt.QLabel("Options: ")
recordOptionsHBoxLayout.addWidget(recordOptionsLabel)
self.onlineReconstructionCheckBox = qt.QCheckBox("Online Reconstruction")
self.onlineReconstructionCheckBox.checked = True
self.recordTrackedFramesCheckBox = qt.QCheckBox("Record Tracked Frames")
self.recordTrackedFramesCheckBox.checked = True
self.probeSweepGuideCheckBox = qt.QCheckBox("Probe Sweep Guide")
self.probeSweepGuideCheckBox.checked = True
recordOptionsHBoxLayout.addWidget(self.onlineReconstructionCheckBox)
recordOptionsHBoxLayout.addWidget(self.recordTrackedFramesCheckBox)
recordOptionsHBoxLayout.addWidget(self.probeSweepGuideCheckBox)
recordOptionsHBoxLayout.addStretch(1)
# Add vertical spacer
self.layout.addStretch(1)
#
# Connections
#
self.linkInputSelector.connect('currentNodeChanged(vtkMRMLNode*)', self.setLink)
self.linkStatusCheckBox.connect('stateChanged(int)',self.onLinkStatusCheckBox)
self.startButton.connect('toggled(bool)', self.onStartButton)
self.inputImageTrackerNodeSelector.connect('currentNodeChanged(vtkMRMLNode*)', self.setTransformNode)
self.deleteButton.connect('clicked(bool)',self.onDeleteButton)
self.directoryButton.connect('directoryChanged(const QString &)',self.onDirectoryButton)