def create(self):
super(PaintEffectOptions,self).create()
self.radiusFrame = qt.QFrame(self.frame)
self.radiusFrame.setLayout(qt.QHBoxLayout())
self.frame.layout().addWidget(self.radiusFrame)
self.widgets.append(self.radiusFrame)
self.radiusLabel = qt.QLabel("Radius:", self.radiusFrame)
self.radiusLabel.setToolTip("Set the radius of the paint brush in millimeters")
self.radiusFrame.layout().addWidget(self.radiusLabel)
self.widgets.append(self.radiusLabel)
self.radiusSpinBox = qt.QDoubleSpinBox(self.radiusFrame)
self.radiusSpinBox.setToolTip("Set the radius of the paint brush in millimeters")
self.radiusSpinBox.minimum = 0.01
self.radiusSpinBox.maximum = 100
self.radiusSpinBox.suffix = "mm"
self.radiusFrame.layout().addWidget(self.radiusSpinBox)
self.widgets.append(self.radiusSpinBox)
self.radiusUnitsToggle = qt.QPushButton("px:")
self.radiusUnitsToggle.setToolTip("Toggle radius quick set buttons between mm and label volume pixel size units")
self.radiusUnitsToggle.setFixedWidth(35)
self.radiusFrame.layout().addWidget(self.radiusUnitsToggle)
self.radiusUnitsToggle.connect('clicked()',self.onRadiusUnitsToggle)
self.radiusQuickies = {}
quickies = ( (2, self.onQuickie2Clicked), (3,self.onQuickie3Clicked),
(4, self.onQuickie4Clicked), (5, self.onQuickie5Clicked),
(10, self.onQuickie10Clicked), (20, self.onQuickie20Clicked) )
for rad,callback in quickies:
self.radiusQuickies[rad] = qt.QPushButton(str(rad))
self.radiusFrame.layout().addWidget(self.radiusQuickies[rad])
self.radiusQuickies[rad].setFixedWidth(25)
self.radiusQuickies[rad].connect('clicked()', callback)
self.radiusQuickies[rad].setToolTip("Set radius based on mm or label voxel size units depending on toggle value")
self.radius = ctk.ctkDoubleSlider(self.frame)
self.radius.minimum = 0.01
self.radius.maximum = 100
self.radius.orientation = 1
self.radius.singleStep = 0.01
self.frame.layout().addWidget(self.radius)
self.widgets.append(self.radius)
self.smudge = qt.QCheckBox("Smudge", self.frame)
self.smudge.setToolTip("Set the label number automatically by sampling the pixel location where the brush stroke starts.")
self.frame.layout().addWidget(self.smudge)
self.widgets.append(self.smudge)
EditorLib.HelpButton(self.frame, "Use this tool to paint with a round brush of the selected radius")
self.connections.append( (self.smudge, 'clicked()', self.updateMRMLFromGUI) )
self.connections.append( (self.radius, 'valueChanged(double)', self.onRadiusValueChanged) )
self.connections.append( (self.radiusSpinBox, 'valueChanged(double)', self.onRadiusSpinBoxChanged) )
# Add vertical spacer
self.frame.layout().addStretch(1)
def numericInputFrame(parent, label, tooltip, minimum, maximum, step, decimals): inputFrame = qt.QFrame(parent) inputFrame.setLayout(qt.QHBoxLayout()) inputLabel = qt.QLabel(label, inputFrame) inputLabel.setToolTip(tooltip) inputFrame.layout().addWidget(inputLabel) inputSpinBox = qt.QDoubleSpinBox(inputFrame) inputSpinBox.setToolTip(tooltip) inputSpinBox.minimum = minimum inputSpinBox.maximum = maximum inputSpinBox.singleStep = step inputSpinBox.decimals = decimals inputFrame.layout().addWidget(inputSpinBox) inputSlider = ctk.ctkDoubleSlider(inputFrame) inputSlider.minimum = minimum inputSlider.maximum = maximum inputSlider.orientation = 1 inputSlider.singleStep = step inputSlider.setToolTip(tooltip) inputFrame.layout().addWidget(inputSlider) return inputFrame, inputSlider, inputSpinBox
def numericInputFrame(parent, label, tooltip, minimum, maximum, step, decimals): inputFrame = qt.QFrame(parent) inputFrame.setLayout(qt.QHBoxLayout()) inputLabel = qt.QLabel(label, inputFrame) inputLabel.setToolTip(tooltip) inputFrame.layout().addWidget(inputLabel) inputSpinBox = qt.QDoubleSpinBox(inputFrame) inputSpinBox.setToolTip(tooltip) inputSpinBox.minimum = minimum inputSpinBox.maximum = maximum inputSpinBox.singleStep = step inputSpinBox.decimals = decimals inputFrame.layout().addWidget(inputSpinBox) inputSlider = ctk.ctkDoubleSlider(inputFrame) inputSlider.minimum = minimum inputSlider.maximum = maximum inputSlider.orientation = 1 inputSlider.singleStep = step inputSlider.setToolTip(tooltip) inputFrame.layout().addWidget(inputSlider) return inputFrame, inputSlider, inputSpinBox
def create(self):
super(InteractiveConnectedComponentsUsingParzenPDFsOptions,
self).create()
ioCollapsibleButton = ctk.ctkCollapsibleGroupBox()
ioCollapsibleButton.title = "IO"
ioCollapsibleButton.collapsed = 0
self.frame.layout().addWidget(ioCollapsibleButton)
# Layout within the io collapsible button
ioFormLayout = qt.QFormLayout(ioCollapsibleButton)
self.additionalInputNodeSelectors = []
for i in range(0, 2):
self.additionalInputNodeSelectors.append(
self.addInputNodeSelector(i, ioFormLayout))
self.additionalInputNodeSelectors[
0].toolTip = "Select the 1st additional input volume to be segmented"
self.additionalInputNodeSelectors[
1].toolTip = "Select the 2nd additional input volume to be segmented"
# Objects
objectCollapsibleGroupBox = ctk.ctkCollapsibleGroupBox()
objectCollapsibleGroupBox.title = "Objects"
self.frame.layout().addWidget(objectCollapsibleGroupBox)
# Layout within the io collapsible button
objectFormLayout = qt.QFormLayout(objectCollapsibleGroupBox)
foregroundLayout = qt.QHBoxLayout()
foregroundLabel = slicer.qMRMLLabelComboBox()
foregroundLabel.objectName = 'Foreground label'
foregroundLabel.setMRMLScene(slicer.mrmlScene)
foregroundLabel.setMRMLColorNode(self.editUtil.getColorNode())
foregroundLabel.labelValueVisible = True
foregroundLabel.currentColor = 1
self.foregroundLabel = foregroundLabel
self.connections.append(
(self.foregroundLabel, 'currentColorChanged(int)',
self.updateMRMLFromGUI))
foregroundWeightSpinBox = qt.QDoubleSpinBox(foregroundLabel)
self.foregroundWeightSpinBox = foregroundWeightSpinBox
foregroundWeightSpinBox.setRange(0.0, 1.0)
foregroundWeightSpinBox.setSingleStep(0.1)
foregroundWeightSpinBox.value = 1.0
foregroundPopup = ctk.ctkPopupWidget(foregroundWeightSpinBox)
foregroundPopupLayout = qt.QHBoxLayout(foregroundPopup)
foregroundPopupSlider = ctk.ctkDoubleSlider(foregroundPopup)
self.foregroundPopupSlider = foregroundPopupSlider
foregroundPopupSlider.maximum = 1.0
foregroundPopupSlider.minimum = 0.0
foregroundPopupSlider.singleStep = 0.1
foregroundPopupSlider.connect('valueChanged(double)',
self.foregroundWeightSpinBox.setValue)
foregroundWeightSpinBox.connect('valueChanged(double)',
self.foregroundPopupSlider.setValue)
self.connections.append(
(self.foregroundWeightSpinBox, 'valueChanged(double)',
self.updateMRMLFromGUI))
foregroundLayout.addWidget(foregroundLabel)
foregroundLayout.addWidget(foregroundWeightSpinBox)
foregroundPopupLayout.addWidget(foregroundPopupSlider)
objectFormLayout.addRow("Foreground Label:", foregroundLayout)
self.objectLabel = foregroundLabel
# http://qt-project.org/doc/qt-4.7/qt.html
foregroundPopup.alignment = 0x0082 # Qt::AlignVCenter | Qt::AlignRight
foregroundPopup.horizontalDirection = 0 # Qt::LeftToRight
foregroundPopup.verticalDirection = 0 # Qt::TopToBottom
foregroundPopup.animationEffect = 1 # Qt::ScrollEffect
backgroundLayout = qt.QHBoxLayout()
backgroundLabel = slicer.qMRMLLabelComboBox()
backgroundLabel.objectName = 'Background label'
backgroundLabel.setMRMLScene(slicer.mrmlScene)
backgroundLabel.setMRMLColorNode(self.editUtil.getColorNode())
backgroundLabel.labelValueVisible = True
backgroundLabel.currentColor = 2
self.backgroundLabel = backgroundLabel
self.connections.append(
(self.backgroundLabel, 'currentColorChanged(int)',
self.updateMRMLFromGUI))
backgroundWeightSpinBox = qt.QDoubleSpinBox(backgroundLabel)
self.backgroundWeightSpinBox = backgroundWeightSpinBox
backgroundWeightSpinBox.setRange(0.0, 1.0)
backgroundWeightSpinBox.setSingleStep(0.1)
backgroundWeightSpinBox.value = 1.0
backgroundPopup = ctk.ctkPopupWidget(backgroundWeightSpinBox)
backgroundPopupLayout = qt.QHBoxLayout(backgroundPopup)
backgroundPopupSlider = ctk.ctkDoubleSlider(backgroundPopup)
self.backgroundPopupSlider = backgroundPopupSlider
backgroundPopupSlider.maximum = 1.0
backgroundPopupSlider.minimum = 0.0
backgroundPopupSlider.singleStep = 0.1
backgroundPopupSlider.connect('valueChanged(double)',
self.backgroundWeightSpinBox.setValue)
backgroundWeightSpinBox.connect('valueChanged(double)',
self.backgroundPopupSlider.setValue)
self.connections.append(
(self.backgroundWeightSpinBox, 'valueChanged(double)',
self.updateMRMLFromGUI))
backgroundLayout.addWidget(backgroundLabel)
backgroundLayout.addWidget(backgroundWeightSpinBox)
backgroundPopupLayout.addWidget(backgroundPopupSlider)
objectFormLayout.addRow("Background Label:", backgroundLayout)
self.backgroundLabel = backgroundLabel
# http://qt-project.org/doc/qt-4.7/qt.html
backgroundPopup.alignment = 0x0082 # Qt::AlignVCenter | Qt::AlignRight
backgroundPopup.horizontalDirection = 0 # Qt::LeftToRight
backgroundPopup.verticalDirection = 0 # Qt::TopToBottom
backgroundPopup.animationEffect = 1 # Qt::ScrollEffect
# Presets
# Placeholder
presetsCollapsibleGroupBox = ctk.ctkCollapsibleGroupBox()
presetsCollapsibleGroupBox.title = "Preset"
self.frame.layout().addWidget(presetsCollapsibleGroupBox)
presetComboBox = slicer.qSlicerPresetComboBox()
# Advanced Parameters
paramsCollapsibleGroupBox = ctk.ctkCollapsibleGroupBox()
paramsCollapsibleGroupBox.title = "Advanced Parameters"
paramsCollapsibleGroupBox.collapsed = 1
self.frame.layout().addWidget(paramsCollapsibleGroupBox)
# Layout within the io collapsible button
paramsFormLayout = qt.QFormLayout(paramsCollapsibleGroupBox)
erosionSpinBox = qt.QSpinBox()
erosionSpinBox.objectName = 'erosionSpinBox'
erosionSpinBox.toolTip = "Set the erosion radius."
erosionSpinBox.setMinimum(0)
erosionSpinBox.setValue(5) # Default
paramsFormLayout.addRow("Erosion Radius:", erosionSpinBox)
self.erosionSpinBox = erosionSpinBox
self.connections.append(
(self.erosionSpinBox, "valueChanged(int)", self.updateMRMLFromGUI))
holeFillSpinBox = qt.QSpinBox()
holeFillSpinBox.objectName = 'holeFillSpinBox'
holeFillSpinBox.toolTip = "Set the hole fill iterations."
holeFillSpinBox.setMinimum(0)
holeFillSpinBox.setValue(5) #Default
paramsFormLayout.addRow("Hole Fill Iterations:", holeFillSpinBox)
self.holeFillSpinBox = holeFillSpinBox
self.connections.append((self.holeFillSpinBox, "valueChanged(int)",
self.updateMRMLFromGUI))
# probabilitySmoothingStandardDeviation spin box
probabilitySmoothingStdDevSpinBox = qt.QDoubleSpinBox()
probabilitySmoothingStdDevSpinBox.objectName = 'probabilitySmoothingStdDevSpinBox'
probabilitySmoothingStdDevSpinBox.toolTip = "Standard deviation of blur applied to probability images prior to computing maximum likelihood of each class at each pixel."
probabilitySmoothingStdDevSpinBox.setMinimum(0.0)
probabilitySmoothingStdDevSpinBox.setValue(1.0) # Default
probabilitySmoothingStdDevSpinBox.setSingleStep(0.5)
paramsFormLayout.addRow("Probability Smoothing Standard Deviation:",
probabilitySmoothingStdDevSpinBox)
self.probabilitySmoothingStdDevSpinBox = probabilitySmoothingStdDevSpinBox
self.connections.append(
(self.probabilitySmoothingStdDevSpinBox, "valueChanged(double)",
self.updateMRMLFromGUI))
# histogramSmoothingStandardDeviation spin box
histogramSmoothingStdDevSpinBox = qt.QDoubleSpinBox()
histogramSmoothingStdDevSpinBox.objectName = 'histogramSmoothingStdDevSpinBox'
histogramSmoothingStdDevSpinBox.toolTip = "Standard deviation of blur applied to histograms to convert them to probability density function estimates."
histogramSmoothingStdDevSpinBox.setMinimum(0.0)
histogramSmoothingStdDevSpinBox.setValue(5.0) # Default
histogramSmoothingStdDevSpinBox.setSingleStep(0.5)
paramsFormLayout.addRow("Probability Smoothing Standard Deviation:",
histogramSmoothingStdDevSpinBox)
self.histogramSmoothingStdDevSpinBox = histogramSmoothingStdDevSpinBox
self.connections.append(
(self.histogramSmoothingStdDevSpinBox, "valueChanged(double)",
self.updateMRMLFromGUI))
# draft check box
draftCheckBox = qt.QCheckBox()
draftCheckBox.objectName = 'draftCheckBox'
draftCheckBox.toolTip = "Downsamples results by a factor of 4."
paramsFormLayout.addRow("Draft Mode:", draftCheckBox)
self.draftCheckBox = draftCheckBox
self.connections.append(
(self.draftCheckBox, "stateChanged(int)", self.updateMRMLFromGUI))
# force classification check box
forceClassificationCheckBox = qt.QCheckBox()
forceClassificationCheckBox.objectName = 'forceClassificationCheckBox'
forceClassificationCheckBox.toolTip = "Perform the classification of all voxels?"
forceClassificationCheckBox.setChecked(False)
paramsFormLayout.addRow("Classify all voxels: ",
forceClassificationCheckBox)
self.forceClassificationCheckBox = forceClassificationCheckBox
self.connections.append((self.forceClassificationCheckBox,
"stateChanged(int)", self.updateMRMLFromGUI))
# dilate first check box
dilateFirstCheckBox = qt.QCheckBox()
dilateFirstCheckBox.objectName = 'dilateFirstCheckBox'
dilateFirstCheckBox.toolTip = "Dilate and then erode so as to fill-in holes?"
dilateFirstCheckBox.setChecked(False)
paramsFormLayout.addRow("Dilate First: ", dilateFirstCheckBox)
self.dilateFirstCheckBox = dilateFirstCheckBox
self.connections.append((self.dilateFirstCheckBox, "stateChanged(int)",
self.updateMRMLFromGUI))
self.helpLabel = qt.QLabel(
"Run the PDF Segmentation on the current label map.", self.frame)
self.frame.layout().addWidget(self.helpLabel)
self.apply = qt.QPushButton("Apply", self.frame)
self.apply.setToolTip(
"Apply to run segmentation.\nCreates a new label volume using the current volume as input"
)
self.frame.layout().addWidget(self.apply)
self.widgets.append(self.apply)
EditorLib.HelpButton(
self.frame,
"Use this tool to apply segmentation using Parzen windowed PDFs.\n\n Select different label colors and paint on the foreground or background voxels using the paint effect.\nTo run segmentation correctly, you need to supply a minimum or two class labels."
)
self.connections.append((self.apply, 'clicked()', self.onApply))
def create(self):
super(PaintEffectOptions,self).create()
labelVolume = self.editUtil.getLabelVolume()
if labelVolume and labelVolume.GetImageData():
spacing = labelVolume.GetSpacing()
dimensions = labelVolume.GetImageData().GetDimensions()
self.minimumRadius = 0.5 * min(spacing)
bounds = [a*b for a,b in zip(spacing,dimensions)]
self.maximumRadius = 0.5 * max(bounds)
else:
self.minimumRadius = 0.01
self.maximumRadius = 100
self.radiusFrame = qt.QFrame(self.frame)
self.radiusFrame.setLayout(qt.QHBoxLayout())
self.frame.layout().addWidget(self.radiusFrame)
self.widgets.append(self.radiusFrame)
self.radiusLabel = qt.QLabel("Radius:", self.radiusFrame)
self.radiusLabel.setToolTip("Set the radius of the paint brush in millimeters")
self.radiusFrame.layout().addWidget(self.radiusLabel)
self.widgets.append(self.radiusLabel)
self.radiusSpinBox = slicer.qMRMLSpinBox(self.radiusFrame)
self.radiusSpinBox.setToolTip("Set the radius of the paint brush in millimeters")
self.radiusSpinBox.quantity = "length"
# QFlags not wrapped in python. Equivalent to Prefix | Suffix
# See qMRMLSpinBox for more details.
self.radiusSpinBox.unitAwareProperties = 0x01 | 0x02
self.radiusSpinBox.minimum = self.minimumRadius
self.radiusSpinBox.maximum = self.maximumRadius
self.radiusSpinBox.setMRMLScene(slicer.mrmlScene)
from math import log,floor
decimals = floor(log(self.minimumRadius,10))
if decimals < 0:
self.radiusSpinBox.decimals = -decimals + 2
self.radiusFrame.layout().addWidget(self.radiusSpinBox)
self.widgets.append(self.radiusSpinBox)
self.radiusUnitsToggle = qt.QPushButton("px:")
self.radiusUnitsToggle.setToolTip("Toggle radius quick set buttons between mm and label volume pixel size units")
self.radiusUnitsToggle.setFixedWidth(35)
self.radiusFrame.layout().addWidget(self.radiusUnitsToggle)
self.radiusUnitsToggle.connect('clicked()',self.onRadiusUnitsToggle)
self.radiusQuickies = {}
quickies = ( (2, self.onQuickie2Clicked), (3,self.onQuickie3Clicked),
(4, self.onQuickie4Clicked), (5, self.onQuickie5Clicked),
(10, self.onQuickie10Clicked), (20, self.onQuickie20Clicked) )
for rad,callback in quickies:
self.radiusQuickies[rad] = qt.QPushButton(str(rad))
self.radiusFrame.layout().addWidget(self.radiusQuickies[rad])
self.radiusQuickies[rad].setFixedWidth(25)
self.radiusQuickies[rad].connect('clicked()', callback)
self.radiusQuickies[rad].setToolTip("Set radius based on mm or label voxel size units depending on toggle value")
self.radius = ctk.ctkDoubleSlider(self.frame)
self.radius.minimum = self.minimumRadius
self.radius.maximum = self.maximumRadius
self.radius.orientation = 1
self.radius.singleStep = self.minimumRadius
self.frame.layout().addWidget(self.radius)
self.widgets.append(self.radius)
self.sphere = qt.QCheckBox("Sphere", self.frame)
self.sphere.setToolTip("Use a 3D spherical brush rather than a 2D circular brush.")
self.frame.layout().addWidget(self.sphere)
self.widgets.append(self.sphere)
self.smudge = qt.QCheckBox("Smudge", self.frame)
self.smudge.setToolTip("Set the label number automatically by sampling the pixel location where the brush stroke starts.")
self.frame.layout().addWidget(self.smudge)
self.widgets.append(self.smudge)
self.pixelMode = qt.QCheckBox("Pixel Mode", self.frame)
self.pixelMode.setToolTip("Paint exactly the pixel under the cursor, ignoring the radius, threshold, and paint over.")
self.frame.layout().addWidget(self.pixelMode)
self.widgets.append(self.pixelMode)
EditorLib.HelpButton(self.frame, "Use this tool to paint with a round brush of the selected radius")
self.connections.append( (self.sphere, 'clicked()', self.updateMRMLFromGUI) )
self.connections.append( (self.smudge, 'clicked()', self.updateMRMLFromGUI) )
self.connections.append( (self.pixelMode, 'clicked()', self.updateMRMLFromGUI) )
self.connections.append( (self.radius, 'valueChanged(double)', self.onRadiusValueChanged) )
self.connections.append( (self.radiusSpinBox, 'valueChanged(double)', self.onRadiusSpinBoxChanged) )
# Add vertical spacer
self.frame.layout().addStretch(1)
# set the node parameters that are dependent on the input data
self.parameterNode.SetParameter( "PaintEffect,radius", str(self.minimumRadius * 10) )
def createUserInterface(self):
self.__layout = self.__parent.createUserInterface()
'''
# Input fiducials node selector
#self.inputFiducialsNodeSelector = slicer.qMRMLNodeComboBox()
self.inputFiducialsNodeSelector.toolTip = "Select a fiducial to define an insertion point for a screw."
self.inputFiducialsNodeSelector.nodeTypes = (("vtkMRMLMarkupsFiducialNode"), "")
self.inputFiducialsNodeSelector.addEnabled = False
self.inputFiducialsNodeSelector.removeEnabled = False
self.inputFiducialsNodeSelector.setMRMLScene( slicer.mrmlScene )
self.inputFiducialsNodeSelector.connect('currentNodeChanged(vtkMRMLNode*)', self.fidChanged)
self.__layout.addRow("Select Insertion Point:", self.inputFiducialsNodeSelector)
self.fid = self.inputFiducialsNodeSelector.currentNode()
self.sliceChange()
'''
'''
# Input model selector
self.inputScrewSelector = ctk.ctkComboBox()
self.inputScrewSelector.toolTip = "Select a screw to insert."
screwList = ['Select a screw','475x30', '475x35', '475x45', '550x30', '550x40', '550x45', '625x35', '625x40', '625x45', '625x50', '700x35', '700x40', '700x45', '700x50']
self.inputScrewSelector.addItems(screwList)
self.connect(self.inputScrewSelector, PythonQt.QtCore.SIGNAL('activated(QString)'), self.combo_chosen)
self.__layout.addRow("Choose Screw:", self.inputScrewSelector)
vText = qt.QLabel("1st Instrumented Level:")
iText = qt.QLabel("# to Instrument:")
aText = qt.QLabel("Approach Direction:")
self.vSelector = qt.QComboBox()
self.vSelector.setMaximumWidth(120)
self.levels = ("C1","C2","C3","C4","C5","C6","C7","T1","T2","T3","T4","T5","T6","T7","T8","T9","T10","T11","T12","L1", "L2", "L3", "L4", "L5","S1")
self.vSelector.addItems(self.levels)
self.iSelector = qt.QComboBox()
self.iSelector.setMaximumWidth(120)
self.iSelector.addItems(['1','2','3','4','5','6','7','8','9','10','11','12'])
self.aSelector = qt.QComboBox()
self.aSelector.setMaximumWidth(120)
self.aSelector.addItems(['Posterior','Anterior','Left','Right'])
blank = qt.QLabel(" ")
blank.setMaximumWidth(30)
#self.__layout.addWidget(vText)
#self.__layout.addWidget(self.vSelector)
#self.__layout.addWidget(iText)
#self.__layout.addWidget(self.iSelector)
self.vertebraeGridBox = qt.QGridLayout()
self.vertebraeGridBox.addWidget(vText,0,0)
self.vertebraeGridBox.addWidget(self.vSelector,1,0)
self.vertebraeGridBox.addWidget(blank,0,1)
self.vertebraeGridBox.addWidget(iText,0,2)
self.vertebraeGridBox.addWidget(blank,1,1)
self.vertebraeGridBox.addWidget(self.iSelector,1,2)
self.vertebraeGridBox.addWidget(blank,0,3)
self.vertebraeGridBox.addWidget(aText,0,4)
self.vertebraeGridBox.addWidget(blank,1,3)
self.vertebraeGridBox.addWidget(self.aSelector,1,4)
self.__layout.addRow(self.vertebraeGridBox)
'''
self.fiducial = ctk.ctkComboBox()
self.fiducial.toolTip = "Select an insertion site."
self.fiducial.addItems(self.fiduciallist)
self.connect(self.fiducial,
PythonQt.QtCore.SIGNAL('activated(QString)'),
self.fiducial_chosen)
#self.screwGridLayout.addWidget(self.fiducial,0,0)
self.__layout.addRow("Insertion Site:", self.fiducial)
self.__fiducial = ''
measuredText1 = qt.QLabel(" Measured:")
measuredText2 = qt.QLabel(" Measured:")
lengthText = qt.QLabel("Screw Length: ")
widthText = qt.QLabel("Screw Width: ")
self.length = ctk.ctkComboBox()
self.length.toolTip = "Select a screw to insert."
screwList = ['Select a length (mm)', '475', '550', '625', '700']
self.length.addItems(screwList)
self.connect(self.length, PythonQt.QtCore.SIGNAL('activated(QString)'),
self.length_chosen)
self.lengthMeasure = qt.QLineEdit()
#self.__layout.addRow("Screw Length:", self.length)
#self.__layout.addRow("Measured Pedicle Length:", self.lengthMeasure)
self.__length = ''
self.QHBox1 = qt.QHBoxLayout()
self.QHBox1.addWidget(lengthText)
self.QHBox1.addWidget(self.length)
self.QHBox1.addWidget(measuredText1)
self.QHBox1.addWidget(self.lengthMeasure)
self.__layout.addRow(self.QHBox1)
self.diameter = ctk.ctkComboBox()
self.diameter.toolTip = "Select a screw to insert."
screwList = ['Select a diameter (mm)', '30', '35', '45', '50']
self.diameter.addItems(screwList)
self.widthMeasure = qt.QLineEdit()
self.connect(self.diameter,
PythonQt.QtCore.SIGNAL('activated(QString)'),
self.diameter_chosen)
#self.__layout.addRow("Screw Diameter:", self.diameter)
#self.__layout.addRow("Measured Pedicle Width:", self.widthMeasure)
self.__diameter = ''
self.QHBox2 = qt.QHBoxLayout()
self.QHBox2.addWidget(widthText)
self.QHBox2.addWidget(self.diameter)
self.QHBox2.addWidget(measuredText2)
self.QHBox2.addWidget(self.widthMeasure)
self.__layout.addRow(self.QHBox2)
# Load Screw Button
self.__loadScrewButton = qt.QPushButton("Load Screw")
self.__loadScrewButton.enabled = False
#self.__layout.addWidget(self.__loadScrewButton)
self.__loadScrewButton.connect('clicked(bool)', self.loadScrew)
# Delete Screw Button
self.__delScrewButton = qt.QPushButton("Delete Screw")
self.__delScrewButton.enabled = True
#self.__layout.addWidget(self.__delScrewButton)
self.__delScrewButton.connect('clicked(bool)', self.delScrew)
self.QHBox3 = qt.QHBoxLayout()
self.QHBox3.addWidget(self.__loadScrewButton)
self.QHBox3.addWidget(self.__delScrewButton)
self.__layout.addRow(self.QHBox3)
# Input model node selector
self.modelNodeSelector = slicer.qMRMLNodeComboBox()
self.modelNodeSelector.toolTip = "."
self.modelNodeSelector.nodeTypes = (("vtkMRMLModelNode"), "")
self.modelNodeSelector.addEnabled = False
self.modelNodeSelector.removeEnabled = False
self.modelNodeSelector.setMRMLScene(slicer.mrmlScene)
#self.__layout.addRow("Current Screws:", self.modelNodeSelector)
self.transformGrid = qt.QGridLayout()
vText = qt.QLabel("Vertical Adjustment:")
iText = qt.QLabel("Horizontal Adjustment:")
self.transformGrid.addWidget(vText, 0, 0)
self.transformGrid.addWidget(iText, 0, 2)
self.b = ctk.ctkDoubleSpinBox()
self.b.minimum = -45
self.b.maximum = 45
self.transformGrid.addWidget(self.b, 1, 0)
# Transform Sliders
self.transformSlider1 = ctk.ctkDoubleSlider()
self.transformSlider1.minimum = -45
self.transformSlider1.maximum = 45
self.transformSlider1.connect('valueChanged(double)',
self.transformSlider1ValueChanged)
self.transformSlider1.connect('valueChanged(double)', self.b.setValue)
self.transformSlider1.setMinimumHeight(120)
#self.__layout.addRow("Rotate IS", self.transformSlider1)
self.transformGrid.addWidget(self.transformSlider1, 1, 1)
self.b.connect('valueChanged(double)', self.transformSlider1.setValue)
# Transform Sliders
self.transformSlider2 = ctk.ctkSliderWidget()
self.transformSlider2.minimum = -45
self.transformSlider2.maximum = 45
self.transformSlider2.connect('valueChanged(double)',
self.transformSlider2ValueChanged)
self.transformSlider2.setMaximumWidth(200)
#self.__layout.addRow("Rotate LR", self.transformSlider2)
self.transformGrid.addWidget(self.transformSlider2, 1, 2)
self.__layout.addRow(self.transformGrid)
'''
# Transfors Sliders
self.transformSlider3 = ctk.ctkSliderWidget()
self.transformSlider3.minimum = 0
self.transformSlider3.maximum = 100
self.transformSlider3.connect('valueChanged(double)', self.transformSlider3ValueChanged)
self.__layout.addRow("Drive Screw", self.transformSlider3)
'''
# Insert Screw Button
self.insertScrewButton = qt.QPushButton("Insert Screw")
self.insertScrewButton.enabled = True
#self.__layout.addWidget(self.__loadScrewButton)
self.insertScrewButton.connect('clicked(bool)', self.insertScrew)
# Backout Screw Button
self.backoutScrewButton = qt.QPushButton("Backout Screw")
self.backoutScrewButton.enabled = False
#self.__layout.addWidget(self.__delScrewButton)
self.backoutScrewButton.connect('clicked(bool)', self.backoutScrew)
# Reset Screw Button
self.resetScrewButton = qt.QPushButton("Reset Screw")
self.resetScrewButton.enabled = True
#self.__layout.addWidget(self.__delScrewButton)
self.resetScrewButton.connect('clicked(bool)', self.resetScrew)
self.QHBox4 = qt.QHBoxLayout()
self.QHBox4.addWidget(self.insertScrewButton)
self.QHBox4.addWidget(self.backoutScrewButton)
self.QHBox4.addWidget(self.resetScrewButton)
self.__layout.addRow(self.QHBox4)
# Hide ROI Details
#measurementsTable = ctk.ctkCollapsibleButton()
#measurementsTable.text = "Measurements Table"
#self.__layout.addWidget(measurementsTable)
#measurementsTable.collapsed = True
'''
self.view = qt.QTableView()
self.model = qt.QStandardItemModel()
self.view.setModel(self.model)
item = qt.QStandardItem()
item.setText("item")
self.model.setItem(0,0,item)
self.__layout.addWidget(self.view)
'''
#self.__layout.addRow(self.screwGridLayout)
# self.updateWidgetFromParameters(self.parameterNode())
qt.QTimer.singleShot(0, self.killButton)
self.currentFidIndex = self.fiducial.currentIndex
self.currentFidLabel = self.fiducial.currentText
self.fidNode.GetNthFiducialPosition(self.currentFidIndex, self.coords)
logging.debug("Coords: {0}".format(self.coords))
self.updateMeasurements()
self.cameraFocus(self.coords)
def create(self):
super(InteractiveConnectedComponentsUsingParzenPDFsOptions,self).create()
ioCollapsibleButton = ctk.ctkCollapsibleGroupBox()
ioCollapsibleButton.title = "IO"
ioCollapsibleButton.collapsed = 0
self.frame.layout().addWidget(ioCollapsibleButton)
# Layout within the io collapsible button
ioFormLayout = qt.QFormLayout(ioCollapsibleButton)
self.additionalInputNodeSelectors = []
for i in range(0,2):
self.additionalInputNodeSelectors.append(self.addInputNodeSelector(i, ioFormLayout))
self.additionalInputNodeSelectors[0].toolTip = "Select the 1st additional input volume to be segmented"
self.additionalInputNodeSelectors[1].toolTip = "Select the 2nd additional input volume to be segmented"
# Objects
objectCollapsibleGroupBox = ctk.ctkCollapsibleGroupBox()
objectCollapsibleGroupBox.title = "Objects"
self.frame.layout().addWidget(objectCollapsibleGroupBox)
# Layout within the io collapsible button
objectFormLayout = qt.QFormLayout(objectCollapsibleGroupBox)
foregroundLayout = qt.QHBoxLayout()
foregroundLabel = slicer.qMRMLLabelComboBox()
foregroundLabel.objectName = 'Foreground label'
foregroundLabel.setMRMLScene(slicer.mrmlScene)
foregroundLabel.setMRMLColorNode(self.editUtil.getColorNode())
foregroundLabel.labelValueVisible = True
foregroundLabel.currentColor = 1
self.foregroundLabel = foregroundLabel
self.connections.append( (self.foregroundLabel, 'currentColorChanged(int)', self.updateMRMLFromGUI ) )
foregroundWeightSpinBox = qt.QDoubleSpinBox(foregroundLabel)
self.foregroundWeightSpinBox = foregroundWeightSpinBox
foregroundWeightSpinBox.setRange(0.0, 1.0)
foregroundWeightSpinBox.setSingleStep(0.1)
foregroundWeightSpinBox.value = 1.0
foregroundPopup = ctk.ctkPopupWidget( foregroundWeightSpinBox )
foregroundPopupLayout = qt.QHBoxLayout( foregroundPopup )
foregroundPopupSlider = ctk.ctkDoubleSlider( foregroundPopup )
self.foregroundPopupSlider = foregroundPopupSlider
foregroundPopupSlider.maximum = 1.0
foregroundPopupSlider.minimum = 0.0
foregroundPopupSlider.singleStep = 0.1
foregroundPopupSlider.connect('valueChanged(double)', self.foregroundWeightSpinBox.setValue)
foregroundWeightSpinBox.connect('valueChanged(double)', self.foregroundPopupSlider.setValue)
self.connections.append( (self.foregroundWeightSpinBox, 'valueChanged(double)', self.updateMRMLFromGUI ) )
foregroundLayout.addWidget( foregroundLabel )
foregroundLayout.addWidget( foregroundWeightSpinBox )
foregroundPopupLayout.addWidget( foregroundPopupSlider )
objectFormLayout.addRow("Foreground Label:", foregroundLayout )
self.objectLabel = foregroundLabel
# http://qt-project.org/doc/qt-4.7/qt.html
foregroundPopup.alignment = 0x0082 # Qt::AlignVCenter | Qt::AlignRight
foregroundPopup.horizontalDirection = 0 # Qt::LeftToRight
foregroundPopup.verticalDirection = 0 # Qt::TopToBottom
foregroundPopup.animationEffect = 1 # Qt::ScrollEffect
backgroundLayout = qt.QHBoxLayout()
backgroundLabel = slicer.qMRMLLabelComboBox()
backgroundLabel.objectName = 'Background label'
backgroundLabel.setMRMLScene(slicer.mrmlScene)
backgroundLabel.setMRMLColorNode(self.editUtil.getColorNode())
backgroundLabel.labelValueVisible = True
backgroundLabel.currentColor = 2
self.backgroundLabel = backgroundLabel
self.connections.append( (self.backgroundLabel, 'currentColorChanged(int)', self.updateMRMLFromGUI ) )
backgroundWeightSpinBox = qt.QDoubleSpinBox(backgroundLabel)
self.backgroundWeightSpinBox = backgroundWeightSpinBox
backgroundWeightSpinBox.setRange(0.0, 1.0)
backgroundWeightSpinBox.setSingleStep(0.1)
backgroundWeightSpinBox.value = 1.0
backgroundPopup = ctk.ctkPopupWidget( backgroundWeightSpinBox )
backgroundPopupLayout = qt.QHBoxLayout( backgroundPopup )
backgroundPopupSlider = ctk.ctkDoubleSlider( backgroundPopup )
self.backgroundPopupSlider = backgroundPopupSlider
backgroundPopupSlider.maximum = 1.0
backgroundPopupSlider.minimum = 0.0
backgroundPopupSlider.singleStep = 0.1
backgroundPopupSlider.connect('valueChanged(double)', self.backgroundWeightSpinBox.setValue)
backgroundWeightSpinBox.connect('valueChanged(double)', self.backgroundPopupSlider.setValue)
self.connections.append( (self.backgroundWeightSpinBox, 'valueChanged(double)', self.updateMRMLFromGUI ) )
backgroundLayout.addWidget( backgroundLabel )
backgroundLayout.addWidget( backgroundWeightSpinBox )
backgroundPopupLayout.addWidget( backgroundPopupSlider )
objectFormLayout.addRow("Background Label:", backgroundLayout)
self.backgroundLabel = backgroundLabel
# http://qt-project.org/doc/qt-4.7/qt.html
backgroundPopup.alignment = 0x0082 # Qt::AlignVCenter | Qt::AlignRight
backgroundPopup.horizontalDirection = 0 # Qt::LeftToRight
backgroundPopup.verticalDirection = 0 # Qt::TopToBottom
backgroundPopup.animationEffect = 1 # Qt::ScrollEffect
# Presets
# Placeholder
presetsCollapsibleGroupBox = ctk.ctkCollapsibleGroupBox()
presetsCollapsibleGroupBox.title = "Preset"
self.frame.layout().addWidget(presetsCollapsibleGroupBox)
presetComboBox = slicer.qSlicerPresetComboBox()
# Advanced Parameters
paramsCollapsibleGroupBox = ctk.ctkCollapsibleGroupBox()
paramsCollapsibleGroupBox.title = "Advanced Parameters"
paramsCollapsibleGroupBox.collapsed = 1
self.frame.layout().addWidget(paramsCollapsibleGroupBox)
# Layout within the io collapsible button
paramsFormLayout = qt.QFormLayout(paramsCollapsibleGroupBox)
erosionSpinBox = qt.QSpinBox()
erosionSpinBox.objectName = 'erosionSpinBox'
erosionSpinBox.toolTip = "Set the erosion radius."
erosionSpinBox.setMinimum(0)
erosionSpinBox.setValue(5) # Default
paramsFormLayout.addRow("Erosion Radius:", erosionSpinBox)
self.erosionSpinBox = erosionSpinBox
self.connections.append( (self.erosionSpinBox, "valueChanged(int)", self.updateMRMLFromGUI ) )
holeFillSpinBox = qt.QSpinBox()
holeFillSpinBox.objectName = 'holeFillSpinBox'
holeFillSpinBox.toolTip = "Set the hole fill iterations."
holeFillSpinBox.setMinimum(0)
holeFillSpinBox.setValue(5) #Default
paramsFormLayout.addRow("Hole Fill Iterations:", holeFillSpinBox)
self.holeFillSpinBox = holeFillSpinBox
self.connections.append( (self.holeFillSpinBox, "valueChanged(int)", self.updateMRMLFromGUI ) )
# probabilitySmoothingStandardDeviation spin box
probabilitySmoothingStdDevSpinBox = qt.QDoubleSpinBox()
probabilitySmoothingStdDevSpinBox.objectName = 'probabilitySmoothingStdDevSpinBox'
probabilitySmoothingStdDevSpinBox.toolTip = "Standard deviation of blur applied to probability images prior to computing maximum likelihood of each class at each pixel."
probabilitySmoothingStdDevSpinBox.setMinimum(0.0)
probabilitySmoothingStdDevSpinBox.setValue(1.0) # Default
probabilitySmoothingStdDevSpinBox.setSingleStep(0.5)
paramsFormLayout.addRow("Probability Smoothing Standard Deviation:", probabilitySmoothingStdDevSpinBox)
self.probabilitySmoothingStdDevSpinBox = probabilitySmoothingStdDevSpinBox
self.connections.append( (self.probabilitySmoothingStdDevSpinBox, "valueChanged(double)", self.updateMRMLFromGUI ) )
# histogramSmoothingStandardDeviation spin box
histogramSmoothingStdDevSpinBox = qt.QDoubleSpinBox()
histogramSmoothingStdDevSpinBox.objectName = 'histogramSmoothingStdDevSpinBox'
histogramSmoothingStdDevSpinBox.toolTip = "Standard deviation of blur applied to histograms to convert them to probability density function estimates."
histogramSmoothingStdDevSpinBox.setMinimum(0.0)
histogramSmoothingStdDevSpinBox.setValue(5.0) # Default
histogramSmoothingStdDevSpinBox.setSingleStep(0.5)
paramsFormLayout.addRow("Probability Smoothing Standard Deviation:", histogramSmoothingStdDevSpinBox)
self.histogramSmoothingStdDevSpinBox = histogramSmoothingStdDevSpinBox
self.connections.append( (self.histogramSmoothingStdDevSpinBox, "valueChanged(double)", self.updateMRMLFromGUI ) )
# draft check box
draftCheckBox = qt.QCheckBox()
draftCheckBox.objectName = 'draftCheckBox'
draftCheckBox.toolTip = "Downsamples results by a factor of 4."
paramsFormLayout.addRow("Draft Mode:", draftCheckBox)
self.draftCheckBox = draftCheckBox
self.connections.append( (self.draftCheckBox, "stateChanged(int)", self.updateMRMLFromGUI ) )
# force classification check box
forceClassificationCheckBox = qt.QCheckBox()
forceClassificationCheckBox.objectName = 'forceClassificationCheckBox'
forceClassificationCheckBox.toolTip = "Perform the classification of all voxels?"
forceClassificationCheckBox.setChecked(False)
paramsFormLayout.addRow("Classify all voxels: ", forceClassificationCheckBox)
self.forceClassificationCheckBox = forceClassificationCheckBox
self.connections.append( (self.forceClassificationCheckBox, "stateChanged(int)", self.updateMRMLFromGUI ) )
# dilate first check box
dilateFirstCheckBox = qt.QCheckBox()
dilateFirstCheckBox.objectName = 'dilateFirstCheckBox'
dilateFirstCheckBox.toolTip = "Dilate and then erode so as to fill-in holes?"
dilateFirstCheckBox.setChecked(False)
paramsFormLayout.addRow("Dilate First: ", dilateFirstCheckBox)
self.dilateFirstCheckBox = dilateFirstCheckBox
self.connections.append( (self.dilateFirstCheckBox, "stateChanged(int)", self.updateMRMLFromGUI ) )
self.helpLabel = qt.QLabel("Run the PDF Segmentation on the current label map.", self.frame)
self.frame.layout().addWidget(self.helpLabel)
self.apply = qt.QPushButton("Apply", self.frame)
self.apply.setToolTip("Apply to run segmentation.\nCreates a new label volume using the current volume as input")
self.frame.layout().addWidget(self.apply)
self.widgets.append(self.apply)
EditorLib.HelpButton(self.frame, "Use this tool to apply segmentation using Parzen windowed PDFs.\n\n Select different label colors and paint on the foreground or background voxels using the paint effect.\nTo run segmentation correctly, you need to supply a minimum or two class labels.")
self.connections.append( (self.apply, 'clicked()', self.onApply) )
def create(self):
super(PaintEffectOptions, self).create()
labelVolume = self.editUtil.getLabelVolume()
if labelVolume and labelVolume.GetImageData():
spacing = labelVolume.GetSpacing()
dimensions = labelVolume.GetImageData().GetDimensions()
self.minimumRadius = 0.5 * min(spacing)
bounds = [a * b for a, b in zip(spacing, dimensions)]
self.maximumRadius = 0.5 * max(bounds)
else:
self.minimumRadius = 0.01
self.maximumRadius = 100
self.radiusFrame = qt.QFrame(self.frame)
self.radiusFrame.setLayout(qt.QHBoxLayout())
self.frame.layout().addWidget(self.radiusFrame)
self.widgets.append(self.radiusFrame)
self.radiusLabel = qt.QLabel("Radius:", self.radiusFrame)
self.radiusLabel.setToolTip(
"Set the radius of the paint brush in millimeters")
self.radiusFrame.layout().addWidget(self.radiusLabel)
self.widgets.append(self.radiusLabel)
self.radiusSpinBox = slicer.qMRMLSpinBox(self.radiusFrame)
self.radiusSpinBox.objectName = 'SpinBox_Radius'
self.radiusSpinBox.setToolTip(
"Set the radius of the paint brush in millimeters")
self.radiusSpinBox.quantity = "length"
# QFlags not wrapped in python. Equivalent to Prefix | Suffix
# See qMRMLSpinBox for more details.
self.radiusSpinBox.unitAwareProperties = 0x01 | 0x02
self.radiusSpinBox.minimum = self.minimumRadius
self.radiusSpinBox.maximum = self.maximumRadius
self.radiusSpinBox.setMRMLScene(slicer.mrmlScene)
from math import log, floor
decimals = floor(log(self.minimumRadius, 10))
if decimals < 0:
self.radiusSpinBox.decimals = -decimals + 2
self.radiusFrame.layout().addWidget(self.radiusSpinBox)
self.widgets.append(self.radiusSpinBox)
self.radiusUnitsToggle = qt.QPushButton("px:")
self.radiusUnitsToggle.objectName = 'PushButton_RadiusUnitsToggle'
self.radiusUnitsToggle.setToolTip(
"Toggle radius quick set buttons between mm and label volume pixel size units"
)
self.radiusUnitsToggle.setFixedWidth(35)
self.radiusFrame.layout().addWidget(self.radiusUnitsToggle)
self.radiusUnitsToggle.connect('clicked()', self.onRadiusUnitsToggle)
self.radiusQuickies = {}
quickies = ((2, self.onQuickie2Clicked), (3, self.onQuickie3Clicked),
(4, self.onQuickie4Clicked), (5, self.onQuickie5Clicked),
(10, self.onQuickie10Clicked), (20,
self.onQuickie20Clicked))
for rad, callback in quickies:
self.radiusQuickies[rad] = qt.QPushButton(str(rad))
self.radiusQuickies[
rad].objectName = 'PushButton_QuickRadius_{0}'.format(rad)
self.radiusFrame.layout().addWidget(self.radiusQuickies[rad])
self.radiusQuickies[rad].setFixedWidth(25)
self.radiusQuickies[rad].connect('clicked()', callback)
self.radiusQuickies[rad].setToolTip(
"Set radius based on mm or label voxel size units depending on toggle value"
)
self.radius = ctk.ctkDoubleSlider(self.frame)
self.radius.objectName = 'DoubleSlider_Radius'
self.radius.minimum = self.minimumRadius
self.radius.maximum = self.maximumRadius
self.radius.orientation = 1
self.radius.singleStep = self.minimumRadius
self.frame.layout().addWidget(self.radius)
self.widgets.append(self.radius)
self.sphere = qt.QCheckBox("Sphere", self.frame)
self.sphere.objectName = 'CheckBox_Sphere'
self.sphere.setToolTip(
"Use a 3D spherical brush rather than a 2D circular brush.")
self.frame.layout().addWidget(self.sphere)
self.widgets.append(self.sphere)
self.smudge = qt.QCheckBox("Smudge", self.frame)
self.smudge.objectName = 'CheckBox_Smudge'
self.smudge.setToolTip(
"Set the label number automatically by sampling the pixel location where the brush stroke starts."
)
self.frame.layout().addWidget(self.smudge)
self.widgets.append(self.smudge)
self.pixelMode = qt.QCheckBox("Pixel Mode", self.frame)
self.pixelMode.objectName = 'CheckBox_PixelMode'
self.pixelMode.setToolTip(
"Paint exactly the pixel under the cursor, ignoring the radius, threshold, and paint over."
)
self.frame.layout().addWidget(self.pixelMode)
self.widgets.append(self.pixelMode)
EditorLib.HelpButton(
self.frame,
"Use this tool to paint with a round brush of the selected radius")
self.connections.append(
(self.sphere, 'clicked()', self.updateMRMLFromGUI))
self.connections.append(
(self.smudge, 'clicked()', self.updateMRMLFromGUI))
self.connections.append(
(self.pixelMode, 'clicked()', self.updateMRMLFromGUI))
self.connections.append(
(self.radius, 'valueChanged(double)', self.onRadiusValueChanged))
self.connections.append((self.radiusSpinBox, 'valueChanged(double)',
self.onRadiusSpinBoxChanged))
# Add vertical spacer
self.frame.layout().addStretch(1)
# set the node parameters that are dependent on the input data
self.parameterNode.SetParameter("PaintEffect,radius",
str(self.minimumRadius * 10))
def create(self):
super(PaintEffectOptions, self).create()
labelVolume = self.editUtil.getLabelVolume()
if labelVolume and labelVolume.GetImageData():
spacing = labelVolume.GetSpacing()
dimensions = labelVolume.GetImageData().GetDimensions()
self.minimumRadius = 0.5 * min(spacing)
bounds = [a * b for a, b in zip(spacing, dimensions)]
self.maximumRadius = 0.5 * max(bounds)
else:
self.minimumRadius = 0.01
self.maximumRadius = 100
self.radiusFrame = qt.QFrame(self.frame)
self.radiusFrame.setLayout(qt.QHBoxLayout())
self.frame.layout().addWidget(self.radiusFrame)
self.widgets.append(self.radiusFrame)
self.radiusLabel = qt.QLabel("Radius:", self.radiusFrame)
self.radiusLabel.setToolTip(
"Set the radius of the paint brush in millimeters")
self.radiusFrame.layout().addWidget(self.radiusLabel)
self.widgets.append(self.radiusLabel)
self.radiusSpinBox = qt.QDoubleSpinBox(self.radiusFrame)
self.radiusSpinBox.setToolTip(
"Set the radius of the paint brush in millimeters")
self.radiusSpinBox.minimum = self.minimumRadius
self.radiusSpinBox.maximum = self.maximumRadius
self.radiusSpinBox.suffix = "mm"
from math import log, floor
decimals = floor(log(self.minimumRadius, 10))
if decimals < 0:
self.radiusSpinBox.decimals = -decimals + 2
self.radiusFrame.layout().addWidget(self.radiusSpinBox)
self.widgets.append(self.radiusSpinBox)
self.radiusUnitsToggle = qt.QPushButton("px:")
self.radiusUnitsToggle.setToolTip(
"Toggle radius quick set buttons between mm and label volume pixel size units"
)
self.radiusUnitsToggle.setFixedWidth(35)
self.radiusFrame.layout().addWidget(self.radiusUnitsToggle)
self.radiusUnitsToggle.connect('clicked()', self.onRadiusUnitsToggle)
self.radiusQuickies = {}
quickies = ((2, self.onQuickie2Clicked), (3, self.onQuickie3Clicked),
(4, self.onQuickie4Clicked), (5, self.onQuickie5Clicked),
(10, self.onQuickie10Clicked), (20,
self.onQuickie20Clicked))
for rad, callback in quickies:
self.radiusQuickies[rad] = qt.QPushButton(str(rad))
self.radiusFrame.layout().addWidget(self.radiusQuickies[rad])
self.radiusQuickies[rad].setFixedWidth(25)
self.radiusQuickies[rad].connect('clicked()', callback)
self.radiusQuickies[rad].setToolTip(
"Set radius based on mm or label voxel size units depending on toggle value"
)
self.radius = ctk.ctkDoubleSlider(self.frame)
self.radius.minimum = self.minimumRadius
self.radius.maximum = self.maximumRadius
self.radius.orientation = 1
self.radius.singleStep = self.minimumRadius
self.frame.layout().addWidget(self.radius)
self.widgets.append(self.radius)
self.smudge = qt.QCheckBox("Smudge", self.frame)
self.smudge.setToolTip(
"Set the label number automatically by sampling the pixel location where the brush stroke starts."
)
self.frame.layout().addWidget(self.smudge)
self.widgets.append(self.smudge)
EditorLib.HelpButton(
self.frame,
"Use this tool to paint with a round brush of the selected radius")
self.connections.append(
(self.smudge, 'clicked()', self.updateMRMLFromGUI))
self.connections.append(
(self.radius, 'valueChanged(double)', self.onRadiusValueChanged))
self.connections.append((self.radiusSpinBox, 'valueChanged(double)',
self.onRadiusSpinBoxChanged))
# Add vertical spacer
self.frame.layout().addStretch(1)
# set the node parameters that are dependent on the input data
self.parameterNode.SetParameter("PaintEffect,radius",
str(self.minimumRadius * 10))
def createUserInterface( self ):
self.__layout = self.__parent.createUserInterface()
'''
# Input fiducials node selector
#self.inputFiducialsNodeSelector = slicer.qMRMLNodeComboBox()
self.inputFiducialsNodeSelector.toolTip = "Select a fiducial to define an insertion point for a screw."
self.inputFiducialsNodeSelector.nodeTypes = (("vtkMRMLMarkupsFiducialNode"), "")
self.inputFiducialsNodeSelector.addEnabled = False
self.inputFiducialsNodeSelector.removeEnabled = False
self.inputFiducialsNodeSelector.setMRMLScene( slicer.mrmlScene )
self.inputFiducialsNodeSelector.connect('currentNodeChanged(vtkMRMLNode*)', self.fidChanged)
self.__layout.addRow("Select Insertion Point:", self.inputFiducialsNodeSelector)
self.fid = self.inputFiducialsNodeSelector.currentNode()
self.sliceChange()
'''
'''
# Input model selector
self.inputScrewSelector = ctk.ctkComboBox()
self.inputScrewSelector.toolTip = "Select a screw to insert."
screwList = ['Select a screw','475x30', '475x35', '475x45', '550x30', '550x40', '550x45', '625x35', '625x40', '625x45', '625x50', '700x35', '700x40', '700x45', '700x50']
self.inputScrewSelector.addItems(screwList)
self.connect(self.inputScrewSelector, PythonQt.QtCore.SIGNAL('activated(QString)'), self.combo_chosen)
self.__layout.addRow("Choose Screw:", self.inputScrewSelector)
vText = qt.QLabel("1st Instrumented Level:")
iText = qt.QLabel("# to Instrument:")
aText = qt.QLabel("Approach Direction:")
self.vSelector = qt.QComboBox()
self.vSelector.setMaximumWidth(120)
self.levels = ("C1","C2","C3","C4","C5","C6","C7","T1","T2","T3","T4","T5","T6","T7","T8","T9","T10","T11","T12","L1", "L2", "L3", "L4", "L5","S1")
self.vSelector.addItems(self.levels)
self.iSelector = qt.QComboBox()
self.iSelector.setMaximumWidth(120)
self.iSelector.addItems(['1','2','3','4','5','6','7','8','9','10','11','12'])
self.aSelector = qt.QComboBox()
self.aSelector.setMaximumWidth(120)
self.aSelector.addItems(['Posterior','Anterior','Left','Right'])
blank = qt.QLabel(" ")
blank.setMaximumWidth(30)
#self.__layout.addWidget(vText)
#self.__layout.addWidget(self.vSelector)
#self.__layout.addWidget(iText)
#self.__layout.addWidget(self.iSelector)
self.vertebraeGridBox = qt.QGridLayout()
self.vertebraeGridBox.addWidget(vText,0,0)
self.vertebraeGridBox.addWidget(self.vSelector,1,0)
self.vertebraeGridBox.addWidget(blank,0,1)
self.vertebraeGridBox.addWidget(iText,0,2)
self.vertebraeGridBox.addWidget(blank,1,1)
self.vertebraeGridBox.addWidget(self.iSelector,1,2)
self.vertebraeGridBox.addWidget(blank,0,3)
self.vertebraeGridBox.addWidget(aText,0,4)
self.vertebraeGridBox.addWidget(blank,1,3)
self.vertebraeGridBox.addWidget(self.aSelector,1,4)
self.__layout.addRow(self.vertebraeGridBox)
'''
self.fiducial = ctk.ctkComboBox()
self.fiducial.toolTip = "Select an insertion site."
#fiducialList = ['Select an insertion landmark', self.fiduciallist]
#print self.fiduciallist
#print fiducialList
#self.fiducial.addItem("Select an insertion site, no really")
#self.fiducial.addItem("Select an insertion site.")
self.fiducial.addItems(self.fiduciallist)
self.connect(self.fiducial, PythonQt.QtCore.SIGNAL('activated(QString)'), self.fiducial_chosen)
#self.connect(self.fiducial, PythonQt.QtCore.SIGNAL('activated(QString)'), self.fidChanged)
#self.screwGridLayout.addWidget(self.fiducial,0,0)
self.__layout.addRow("Insertion Site:", self.fiducial)
self.__fiducial = ''
measuredText1 = qt.QLabel(" Measured:")
measuredText2 = qt.QLabel(" Measured:")
lengthText = qt.QLabel("Screw Length: ")
widthText = qt.QLabel("Screw Width: ")
self.length = ctk.ctkComboBox()
self.length.toolTip = "Select a screw to insert."
screwList = ['Select a length (mm)','475', '550','625','700']
self.length.addItems(screwList)
self.connect(self.length, PythonQt.QtCore.SIGNAL('activated(QString)'), self.length_chosen)
self.lengthMeasure = qt.QLineEdit()
#self.__layout.addRow("Screw Length:", self.length)
#self.__layout.addRow("Measured Pedicle Length:", self.lengthMeasure)
self.__length = ''
self.QHBox1 = qt.QHBoxLayout()
self.QHBox1.addWidget(lengthText)
self.QHBox1.addWidget(self.length)
self.QHBox1.addWidget(measuredText1)
self.QHBox1.addWidget(self.lengthMeasure)
self.__layout.addRow(self.QHBox1)
self.diameter = ctk.ctkComboBox()
self.diameter.toolTip = "Select a screw to insert."
screwList = ['Select a diameter (mm)','30', '35', '45', '50']
self.diameter.addItems(screwList)
self.widthMeasure = qt.QLineEdit()
self.connect(self.diameter, PythonQt.QtCore.SIGNAL('activated(QString)'), self.diameter_chosen)
#self.__layout.addRow("Screw Diameter:", self.diameter)
#self.__layout.addRow("Measured Pedicle Width:", self.widthMeasure)
self.__diameter = ''
self.QHBox2 = qt.QHBoxLayout()
self.QHBox2.addWidget(widthText)
self.QHBox2.addWidget(self.diameter)
self.QHBox2.addWidget(measuredText2)
self.QHBox2.addWidget(self.widthMeasure)
self.__layout.addRow(self.QHBox2)
# Load Screw Button
self.__loadScrewButton = qt.QPushButton("Load Screw")
self.__loadScrewButton.enabled = False
#self.__layout.addWidget(self.__loadScrewButton)
self.__loadScrewButton.connect('clicked(bool)', self.loadScrew)
# Delete Screw Button
self.__delScrewButton = qt.QPushButton("Delete Screw")
self.__delScrewButton.enabled = True
#self.__layout.addWidget(self.__delScrewButton)
self.__delScrewButton.connect('clicked(bool)', self.delScrew)
self.QHBox3 = qt.QHBoxLayout()
self.QHBox3.addWidget(self.__loadScrewButton)
self.QHBox3.addWidget(self.__delScrewButton)
self.__layout.addRow(self.QHBox3)
# Input model node selector
self.modelNodeSelector = slicer.qMRMLNodeComboBox()
self.modelNodeSelector.toolTip = "."
self.modelNodeSelector.nodeTypes = (("vtkMRMLModelNode"), "")
self.modelNodeSelector.addEnabled = False
self.modelNodeSelector.removeEnabled = False
self.modelNodeSelector.setMRMLScene( slicer.mrmlScene )
#self.__layout.addRow("Current Screws:", self.modelNodeSelector)
self.transformGrid = qt.QGridLayout()
vText = qt.QLabel("Vertical Adjustment:")
iText = qt.QLabel("Horizontal Adjustment:")
self.transformGrid.addWidget(vText, 0,0)
self.transformGrid.addWidget(iText, 0,2)
self.b = ctk.ctkDoubleSpinBox()
self.b.minimum = -45
self.b.maximum = 45
self.transformGrid.addWidget(self.b, 1,0)
# Transform Sliders
self.transformSlider1 = ctk.ctkDoubleSlider()
self.transformSlider1.minimum = -45
self.transformSlider1.maximum = 45
self.transformSlider1.connect('valueChanged(double)', self.transformSlider1ValueChanged)
self.transformSlider1.connect('valueChanged(double)', self.b.setValue)
self.transformSlider1.setMinimumHeight(120)
#self.__layout.addRow("Rotate IS", self.transformSlider1)
self.transformGrid.addWidget(self.transformSlider1, 1,1)
self.b.connect('valueChanged(double)', self.transformSlider1.setValue)
# Transform Sliders
self.transformSlider2 = ctk.ctkSliderWidget()
self.transformSlider2.minimum = -45
self.transformSlider2.maximum = 45
self.transformSlider2.connect('valueChanged(double)', self.transformSlider2ValueChanged)
self.transformSlider2.setMaximumWidth(200)
#self.__layout.addRow("Rotate LR", self.transformSlider2)
self.transformGrid.addWidget(self.transformSlider2, 1,2)
self.__layout.addRow(self.transformGrid)
'''
# Transfors Sliders
self.transformSlider3 = ctk.ctkSliderWidget()
self.transformSlider3.minimum = 0
self.transformSlider3.maximum = 100
self.transformSlider3.connect('valueChanged(double)', self.transformSlider3ValueChanged)
self.__layout.addRow("Drive Screw", self.transformSlider3)
'''
# Insert Screw Button
self.insertScrewButton = qt.QPushButton("Insert Screw")
self.insertScrewButton.enabled = True
#self.__layout.addWidget(self.__loadScrewButton)
self.insertScrewButton.connect('clicked(bool)', self.insertScrew)
# Backout Screw Button
self.backoutScrewButton = qt.QPushButton("Backout Screw")
self.backoutScrewButton.enabled = False
#self.__layout.addWidget(self.__delScrewButton)
self.backoutScrewButton.connect('clicked(bool)', self.backoutScrew)
# Reset Screw Button
self.resetScrewButton = qt.QPushButton("Reset Screw")
self.resetScrewButton.enabled = True
#self.__layout.addWidget(self.__delScrewButton)
self.resetScrewButton.connect('clicked(bool)', self.resetScrew)
self.QHBox4 = qt.QHBoxLayout()
self.QHBox4.addWidget(self.insertScrewButton)
self.QHBox4.addWidget(self.backoutScrewButton)
self.QHBox4.addWidget(self.resetScrewButton)
self.__layout.addRow(self.QHBox4)
# Hide ROI Details
#measurementsTable = ctk.ctkCollapsibleButton()
#measurementsTable.text = "Measurements Table"
#self.__layout.addWidget(measurementsTable)
#measurementsTable.collapsed = True
'''
self.view = qt.QTableView()
self.model = qt.QStandardItemModel()
self.view.setModel(self.model)
item = qt.QStandardItem()
item.setText("item")
self.model.setItem(0,0,item)
self.__layout.addWidget(self.view)
'''
#self.__layout.addRow(self.screwGridLayout)
# self.updateWidgetFromParameters(self.parameterNode())
qt.QTimer.singleShot(0, self.killButton)
self.currentFidIndex = self.fiducial.currentIndex
self.currentFidLabel = self.fiducial.currentText
self.fidNode.GetNthFiducialPosition(self.currentFidIndex,self.coords)
print self.coords
self.updateMeasurements()
self.cameraFocus(self.coords)
