示例#1
0
 def loadRepairDBDialog(self):
   self.set_busy(True)
   fname = QFileDialog.getOpenFileName(self, 'Open repair file')
   if os.path.isfile(fname) :
     self.textBox.append('Reading repair network from '+fname+'...')        
     try:
       self.repairnet = sbml.readSBMLnetwork(fname, 'repairnet')
       self.textBox.append('done.')  
     except:  self.textBox.append('failed.')     
   self.set_busy(False) 
   self.checkState()
示例#2
0
 def loadDraftDialog(self):
   self.set_busy(True)
   fname = QFileDialog.getOpenFileName(self, 'Open draft file')
   if os.path.isfile(fname) :
     self.textBox.append('Reading draft network from '+fname+'...')        
     #self.draftnet = sbml.read_draftnetworkSBML(fname)
     try:
       self.draftnet = sbml.readSBMLnetwork(fname, 'draft')
       self.textBox.append('done.') 
     except:  self.textBox.append('failed.')    
   self.set_busy(False)            
   self.checkState()
示例#3
0
文件: meneco.py 项目: cfrioux/meneco
                        help="targets in SBML format")

    parser.add_argument('--enumerate',
                        help="enumerate all minimal completions",
                        action="store_true")

    args = parser.parse_args()

    draft_sbml = args.draftnetwork
    repair_sbml = args.repairnetwork
    seeds_sbml = args.seeds
    targets_sbml =  args.targets

    print('Reading draft network from ',draft_sbml,'...',end=' ')
    sys.stdout.flush()
    draftnet = sbml.readSBMLnetwork(draft_sbml, 'draft')
    print('done.')
    #draftnet.to_file("draftnet.lp")

    print('Reading seeds from ',seeds_sbml,'...',end=' ')
    sys.stdout.flush()
    seeds = sbml.readSBMLseeds(seeds_sbml)
    print('done.')
    #seeds.to_file("seeds.lp")

    print('Reading targets from ',targets_sbml,'...',end=' ')
    sys.stdout.flush()
    targets = sbml.readSBMLtargets(targets_sbml)
    print('done.')
    #targets.to_file("targets.lp")