if haveGFP == 1:
FILE_GFP = a020_CopyFiles.main( GLOBAL_DATASET_PATH, LOCAL_DATASET_PATH_DATA, '*GFPdsu.' )
if haveDAP == 1:
FILE_DAP = a020_CopyFiles.main( GLOBAL_DATASET_PATH, LOCAL_DATASET_PATH_DATA, '*DAPIdsu.' )
elapsed_1 = (time.clock() - start_1)
print "\t\tTime_1: "+str(elapsed_1)
if runCopy_db == 1:
start_2 = time.clock()
runCopy_db_log = LOCAL_DATASET_PATH_LOG +'/runCopyProjections_db.log'
TEMP_FILE = open(runCopy_db_log, 'w')
TEMP_FILE.write('CopyLog\n')
TEMP_FILE.close()
if haveCy5 == 1:
a021_Project.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_DATA_DEBUG, FILE_Cy5, runCopy_db_log, 'ORG_RES' )
if haveTRT == 1:
a021_Project.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_DATA_DEBUG, FILE_TRI, runCopy_db_log, 'ORG_RES' )
if haveGFP == 1:
a021_Project.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_DATA_DEBUG, FILE_GFP, runCopy_db_log, 'ORG_RES' )
if haveDAP == 1:
a021_Project.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_DATA_DEBUG, FILE_DAP, runCopy_db_log, 'ORG_RES' )
elapsed_2 = (time.clock() - start_2)
print "\t\tTime_2: "+str(elapsed_2)
print "# ---------------------------------------------------------------------------------------------------------------------------------------"
print "# Run Backgroun Substraction: "+DATA_FOLDER
print "# ---------------------------------------------------------------------------------------------------------------------------------------"
if runBack == 1:
start_1 = time.clock()
if haveCy5 == 1:
FILE_DAP = a020_CopyFiles.main(GLOBAL_DATASET_PATH,
LOCAL_DATASET_PATH_DATA,
'*DAPIdsu.')
elapsed_1 = (time.clock() - start_1)
print "\t\tTime_1: " + str(elapsed_1)
if runCopy_db == 1:
start_2 = time.clock()
runCopy_db_log = LOCAL_DATASET_PATH_LOG + '/runCopyProjections_db.log'
TEMP_FILE = open(runCopy_db_log, 'w')
TEMP_FILE.write('CopyLog\n')
TEMP_FILE.close()
if haveCy5 == 1:
a021_Project.main(LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE,
LOCAL_DATASET_PATH_DATA_DEBUG, FILE_Cy5,
runCopy_db_log, 'ORG_RES')
if haveTRT == 1:
a021_Project.main(LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE,
LOCAL_DATASET_PATH_DATA_DEBUG, FILE_TRI,
runCopy_db_log, 'ORG_RES')
if haveGFP == 1:
a021_Project.main(LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE,
LOCAL_DATASET_PATH_DATA_DEBUG, FILE_GFP,
runCopy_db_log, 'ORG_RES')
if haveDAP == 1:
a021_Project.main(LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE,
LOCAL_DATASET_PATH_DATA_DEBUG, FILE_DAP,
runCopy_db_log, 'ORG_RES')
elapsed_2 = (time.clock() - start_2)
print "\t\tTime_2: " + str(elapsed_2)
if FILE_DAP == "":
haveDAP = 0
if runCopy_db == 1:
start_2 = time.clock()
runCopy_db_log = LOCAL_DATASET_PATH_LOG + "/runCopyProjections_db.log"
TEMP_FILE = open(runCopy_db_log, "w")
TEMP_FILE.write("CopyLog\n")
TEMP_FILE.close()
if haveCy5 == 1:
a021_Project.main(
LOCAL_DATASET_PATH_LOG,
FARSIGHT_BIN_EXE,
LOCAL_DATASET_PATH_DATA_DEBUG,
FILE_Cy5,
runCopy_db_log,
"ORG_RES_HISTO",
"TIFF",
)
if haveTRT == 1:
a021_Project.main(
LOCAL_DATASET_PATH_LOG,
FARSIGHT_BIN_EXE,
LOCAL_DATASET_PATH_DATA_DEBUG,
FILE_TRI,
runCopy_db_log,
"ORG_RES_HISTO",
"TIFF",
)
if haveGFP == 1:
