示例#1
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    def allocate_measurement(self, grid: Grid, wavelength: float,
                             scan: AbstractScan) -> Measurement:
        grid.check_is_defined()
        calibrations = calibrations_from_grid(grid.gpts,
                                              grid.sampling,
                                              names=['x', 'y'],
                                              units='Å')

        array = np.zeros(scan.shape + grid.gpts, dtype=np.complex64)
        measurement = Measurement(array,
                                  calibrations=scan.calibrations +
                                  calibrations)
        if isinstance(self.save_file, str):
            measurement = measurement.write(self.save_file)
        return measurement
示例#2
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文件: test_grid.py 项目: nzaker/abTEM
def test_create_grid():
    grid = Grid(extent=5, sampling=.2)

    assert (grid.extent[0] == 5.) & (grid.extent[1] == 5.)
    assert (grid.gpts[0] == 25) & (grid.gpts[1] == 25)
    assert (grid.sampling[0] == .2) & (grid.sampling[1] == .2)

    grid = Grid(sampling=.2, gpts=10)
    assert (grid.extent[0] == 2.) & (grid.extent[1] == 2.)

    grid = Grid(extent=(8, 6), gpts=10)
    assert (grid.sampling[0] == .8) & (grid.sampling[1] == .6)

    grid = Grid()
    with pytest.raises(RuntimeError):
        grid.check_is_defined()
示例#3
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    def allocate_measurement(self, grid: Grid, wavelength: float,
                             scan: AbstractScan) -> Measurement:
        grid.check_is_defined()
        shape = (grid.gpts[0] // 2, grid.gpts[1] // 2)

        calibrations = calibrations_from_grid(grid.antialiased_gpts,
                                              grid.antialiased_sampling,
                                              names=['alpha_x', 'alpha_y'],
                                              units='mrad',
                                              scale_factor=wavelength * 1000,
                                              fourier_space=True)

        array = np.zeros(scan.shape + shape)
        measurement = Measurement(array,
                                  calibrations=scan.calibrations +
                                  calibrations)
        if isinstance(self.save_file, str):
            measurement = measurement.write(self.save_file)
        return measurement
示例#4
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    def show(self,
             grid: Grid,
             wavelength: float,
             cbar_label: str = 'Detector regions',
             **kwargs):
        grid.check_is_defined()

        array = np.full(grid.antialiased_gpts, -1, dtype=np.int)
        for i, indices in enumerate(
                self._get_regions(grid.antialiased_gpts,
                                  grid.antialiased_sampling, wavelength)):
            array.ravel()[indices] = i

        calibrations = calibrations_from_grid(grid.antialiased_gpts,
                                              grid.antialiased_sampling,
                                              names=['alpha_x', 'alpha_y'],
                                              units='mrad.',
                                              scale_factor=wavelength * 1000,
                                              fourier_space=True)
        return show_image(array,
                          calibrations,
                          cbar_label=cbar_label,
                          discrete=True,
                          **kwargs)