def __init__(self, host, identity):
QtGui.QWidget.__init__(self)
self.host = host
self.layout = QtGui.QVBoxLayout()
self.setLayout(self.layout)
self.dbgui = DatabaseGui.DatabaseGui(
dm=host.dataManager(), tables={identity: 'EventDetector_events'})
self.storeBtn = pg.FeedbackButton("Store to DB")
#self.storeBtn.clicked.connect(self.storeClicked)
self.layout.addWidget(self.dbgui)
self.layout.addWidget(self.storeBtn)
for name in ['getTableName', 'getDb']:
setattr(self, name, getattr(self.dbgui, name))
def __init__(self, mosaic_editor):
self.mosaic_editor = mosaic_editor
QtGui.QWidget.__init__(self)
self.layout = QtGui.QGridLayout()
self.setLayout(self.layout)
self.load_btn = QtGui.QPushButton("Download 20x")
self.layout.addWidget(self.load_btn, 0, 0)
self.load_btn.clicked.connect(self.load_clicked)
self.submit_btn = pg.FeedbackButton("Submit cell positions to LIMS")
self.layout.addWidget(self.submit_btn, 1, 0)
self.submit_btn.clicked.connect(self.submit)
def __init__(self, host):
AnalysisModule.__init__(self, host)
if self.dataModel is None:
raise Exception(
"MapAnalyzer module requires a data model, but none is loaded yet."
)
self.currentMap = None
self.analysisValid = False
self.colorsValid = False
self.ctrlLayout = pg.LayoutWidget()
self.ctrl = ptree.ParameterTree(showHeader=False)
self.ctrlLayout.addWidget(self.ctrl, row=0, col=0)
self.recalcBtn = QtGui.QPushButton('Recalculate')
self.ctrlLayout.addWidget(self.recalcBtn, row=1, col=0)
self.storeBtn = pg.FeedbackButton('Store to DB')
self.ctrlLayout.addWidget(self.storeBtn, row=2, col=0)
self.loader = Loader(host=self, dm=host.dataManager())
modPath = os.path.abspath(os.path.dirname(__file__))
self.colorMapper = ColorMapper(
filePath=os.path.join(modPath, "colorMaps"))
self._elements_ = OrderedDict([
('File Loader', {
'type': 'fileInput',
'size': (300, 300),
'host': self,
'showFileTree': False
}),
('Map Loader', {
'type': 'ctrl',
'object': self.loader,
'size': (300, 300),
'pos': ('below', 'File Loader')
}),
('Color Mapper', {
'type': 'ctrl',
'object': self.colorMapper,
'size': (800, 200),
'pos': ('right', 'Map Loader')
}),
('Canvas', {
'type': 'canvas',
'size': (800, 400),
'pos': ('right', 'Color Mapper'),
'args': {
'name': 'MapAnalyzer'
}
}),
('Options', {
'type': 'ctrl',
'object': self.ctrlLayout,
'size': (300, 500),
'pos': ('bottom', 'Map Loader')
}),
('Data Plot', {
'type': 'plot',
'pos': ('top', 'Color Mapper'),
'size': (800, 300)
}),
('Score Histogram', {
'type': 'plot',
'pos': ('bottom', 'Data Plot'),
'size': (800, 300)
}),
('Timeline', {
'type': 'plot',
'pos': ('bottom', 'Data Plot'),
'size': (800, 300)
}),
('Stats Table', {
'type': 'dataTree',
'pos': ('bottom', 'Canvas'),
'size': (800, 300)
}),
])
host.resize(1100, 800)
self.initializeElements()
self.filterStage = EventFilter()
self.spontRateStage = SpontRateAnalyzer(
plot=self.getElement('Timeline', create=True))
self.statsStage = EventStatisticsAnalyzer(
histogramPlot=self.getElement('Score Histogram', create=True))
self.regions = RegionMarker(self.getElement('Canvas', create=True))
self.stages = [
self.filterStage, self.spontRateStage, self.statsStage,
self.regions
]
params = [
dict(name='Time Ranges',
type='group',
children=[
dict(name='Direct Start',
type='float',
value=0.498,
suffix='s',
step=0.001,
siPrefix=True),
dict(name='Stimulus',
type='float',
value=0.5,
suffix='s',
step=0.001,
siPrefix=True),
dict(name='Post Start',
type='float',
value=0.502,
suffix='s',
step=0.001,
siPrefix=True),
dict(name='Post Stop',
type='float',
value=0.700,
suffix='s',
step=0.001,
siPrefix=True),
]),
]
## each processing stage comes with its own set of parameters
for stage in self.stages:
params.append(stage.parameters())
self.params = ptree.Parameter.create(name='options',
type='group',
children=params)
self.ctrl.setParameters(self.params, showTop=False)
canvas = self.getElement('Canvas', create=True)
#self.scalebar = pg.ScaleBar(100e-6)
#canvas.addGraphicsItem(self.scalebar, name="ScaleBar")
self.scalebar = pg.ScaleBar(size=500e-6)
self.scalebar.setParentItem(canvas.view)
self.scalebar.anchor((1, 1), (1, 1), offset=(-20, -20))
## Note: need to reconnect this!!
#self.params.sigTreeStateChanged.connect(self.invalidate)
self.recalcBtn.clicked.connect(self.recalcClicked)
self.storeBtn.clicked.connect(self.storeToDB)
self.params.param('Time Ranges').sigTreeStateChanged.connect(
self.updateTimes)
self.getElement('Color Mapper',
create=True).sigChanged.connect(self.colorMapChanged)
self.regions.sigRegionChanged.connect(self.processRegions)