def analysis_b_new(nwb_b, tmpdir_factory):
save_path = str(tmpdir_factory.mktemp("session_b") / "session_b_new.h5")
logging.debug("running analysis b")
session_analysis = SessionAnalysis(nwb_b, save_path)
session_analysis.session_b(plot_flag=False, save_flag=True)
logging.debug("done running analysis b")
logging.debug(save_path)
yield save_path
def analysis_b_new(nwb_b):
with tempfile.NamedTemporaryFile(delete=True) as tf:
save_path = tf.name
logging.debug("running analysis b")
session_analysis = SessionAnalysis(nwb_b, save_path)
session_analysis.session_b(plot_flag=False, save_flag=True)
logging.debug("done running analysis b")
logging.debug(save_path)
yield save_path
if os.path.exists(save_path):
os.remove(save_path)
def analysis_b_new(nwb_b):
with tempfile.NamedTemporaryFile(delete=True) as tf:
save_path = tf.name
logging.debug("running analysis b")
session_analysis = SessionAnalysis(nwb_b, save_path)
session_analysis.session_b(plot_flag=False, save_flag=True)
logging.debug("done running analysis b")
logging.debug(save_path)
yield save_path
if os.path.exists(save_path):
os.remove(save_path)
def session_c():
filename = '/data/informatics/module_test_data/observatory/test_nwb/out_510221121.nwb'
save_path = 'xyzc'
sa = SessionAnalysis(filename, save_path)
return sa
def session_b():
filename = '/data/informatics/module_test_data/observatory/test_nwb/506278598.nwb'
save_path = 'xyzb'
sa = SessionAnalysis(filename, save_path)
return sa
def session_c():
filename = '/data/informatics/CAM/test_nwb/out_510221121.nwb'
save_path = 'xyzc'
sa = SessionAnalysis(filename, save_path)
return sa
def session_b():
filename = '/data/informatics/CAM/test_nwb/506278598.nwb'
save_path = 'xyzb'
sa = SessionAnalysis(filename, save_path)
return sa
def session_a():
filename = '/data/informatics/CAM/test_nwb/out_510390912.nwb'
save_path = 'xyza'
sa = SessionAnalysis(filename, save_path)
return sa
def session_c():
filename = os.path.abspath(
os.path.join("/", "allen", "aibs", "informatics", "module_test_data",
"observatory", "test_nwb", "out_510221121.nwb"))
save_path = 'xyzc'
sa = SessionAnalysis(filename, save_path)
return sa
def analysis_c_new(nwb_c):
with tempfile.NamedTemporaryFile(delete=True) as tf:
save_path = tf.name
logging.debug("running analysis c")
session_analysis = SessionAnalysis(nwb_c, save_path)
session_type = BODS(nwb_c).get_metadata()['session_type']
if session_type == si.THREE_SESSION_C2:
session_analysis.session_c2(plot_flag=False, save_flag=True)
elif session_type == si.THREE_SESSION_C:
session_analysis.session_c(plot_flag=False, save_flag=True)
logging.debug("done running analysis c")
logging.debug(save_path)
yield save_path
if os.path.exists(save_path):
os.remove(save_path)
def analysis_c_new(nwb_c, tmpdir_factory):
save_path = str(tmpdir_factory.mktemp("session_c") / "session_c_new.h5")
logging.debug("running analysis c")
session_analysis = SessionAnalysis(nwb_c, save_path)
session_type = BODS(nwb_c).get_metadata()['session_type']
if session_type == si.THREE_SESSION_C2:
session_analysis.session_c2(plot_flag=False, save_flag=True)
elif session_type == si.THREE_SESSION_C:
session_analysis.session_c(plot_flag=False, save_flag=True)
logging.debug("done running analysis c")
logging.debug(save_path)
yield save_path
def analysis_c_new(nwb_c):
with tempfile.NamedTemporaryFile(delete=True) as tf:
save_path = tf.name
logging.debug("running analysis c")
session_analysis = SessionAnalysis(nwb_c, save_path)
session_type = BODS(nwb_c).get_metadata()['session_type']
if session_type == si.THREE_SESSION_C2:
session_analysis.session_c2(plot_flag=False, save_flag=True)
elif session_type == si.THREE_SESSION_C:
session_analysis.session_c(plot_flag=False, save_flag=True)
logging.debug("done running analysis c")
logging.debug(save_path)
yield save_path
if os.path.exists(save_path):
os.remove(save_path)