def analysis_b_new(nwb_b, tmpdir_factory): save_path = str(tmpdir_factory.mktemp("session_b") / "session_b_new.h5") logging.debug("running analysis b") session_analysis = SessionAnalysis(nwb_b, save_path) session_analysis.session_b(plot_flag=False, save_flag=True) logging.debug("done running analysis b") logging.debug(save_path) yield save_path
def analysis_b_new(nwb_b): with tempfile.NamedTemporaryFile(delete=True) as tf: save_path = tf.name logging.debug("running analysis b") session_analysis = SessionAnalysis(nwb_b, save_path) session_analysis.session_b(plot_flag=False, save_flag=True) logging.debug("done running analysis b") logging.debug(save_path) yield save_path if os.path.exists(save_path): os.remove(save_path)
def analysis_b_new(nwb_b): with tempfile.NamedTemporaryFile(delete=True) as tf: save_path = tf.name logging.debug("running analysis b") session_analysis = SessionAnalysis(nwb_b, save_path) session_analysis.session_b(plot_flag=False, save_flag=True) logging.debug("done running analysis b") logging.debug(save_path) yield save_path if os.path.exists(save_path): os.remove(save_path)
def session_c(): filename = '/data/informatics/module_test_data/observatory/test_nwb/out_510221121.nwb' save_path = 'xyzc' sa = SessionAnalysis(filename, save_path) return sa
def session_b(): filename = '/data/informatics/module_test_data/observatory/test_nwb/506278598.nwb' save_path = 'xyzb' sa = SessionAnalysis(filename, save_path) return sa
def session_c(): filename = '/data/informatics/CAM/test_nwb/out_510221121.nwb' save_path = 'xyzc' sa = SessionAnalysis(filename, save_path) return sa
def session_b(): filename = '/data/informatics/CAM/test_nwb/506278598.nwb' save_path = 'xyzb' sa = SessionAnalysis(filename, save_path) return sa
def session_a(): filename = '/data/informatics/CAM/test_nwb/out_510390912.nwb' save_path = 'xyza' sa = SessionAnalysis(filename, save_path) return sa
def session_c(): filename = os.path.abspath( os.path.join("/", "allen", "aibs", "informatics", "module_test_data", "observatory", "test_nwb", "out_510221121.nwb")) save_path = 'xyzc' sa = SessionAnalysis(filename, save_path) return sa
def analysis_c_new(nwb_c): with tempfile.NamedTemporaryFile(delete=True) as tf: save_path = tf.name logging.debug("running analysis c") session_analysis = SessionAnalysis(nwb_c, save_path) session_type = BODS(nwb_c).get_metadata()['session_type'] if session_type == si.THREE_SESSION_C2: session_analysis.session_c2(plot_flag=False, save_flag=True) elif session_type == si.THREE_SESSION_C: session_analysis.session_c(plot_flag=False, save_flag=True) logging.debug("done running analysis c") logging.debug(save_path) yield save_path if os.path.exists(save_path): os.remove(save_path)
def analysis_c_new(nwb_c, tmpdir_factory): save_path = str(tmpdir_factory.mktemp("session_c") / "session_c_new.h5") logging.debug("running analysis c") session_analysis = SessionAnalysis(nwb_c, save_path) session_type = BODS(nwb_c).get_metadata()['session_type'] if session_type == si.THREE_SESSION_C2: session_analysis.session_c2(plot_flag=False, save_flag=True) elif session_type == si.THREE_SESSION_C: session_analysis.session_c(plot_flag=False, save_flag=True) logging.debug("done running analysis c") logging.debug(save_path) yield save_path
def analysis_c_new(nwb_c): with tempfile.NamedTemporaryFile(delete=True) as tf: save_path = tf.name logging.debug("running analysis c") session_analysis = SessionAnalysis(nwb_c, save_path) session_type = BODS(nwb_c).get_metadata()['session_type'] if session_type == si.THREE_SESSION_C2: session_analysis.session_c2(plot_flag=False, save_flag=True) elif session_type == si.THREE_SESSION_C: session_analysis.session_c(plot_flag=False, save_flag=True) logging.debug("done running analysis c") logging.debug(save_path) yield save_path if os.path.exists(save_path): os.remove(save_path)