"""
amp.plot_summary_stat_boxplots_by_exp_groups(raw_arr_df, arr_summary_stats, sample_inds=None, fig_path=fig_path)
"""Clustering plots"""
"""
1. Dendrograms:
"""
#amp.plot_clustering_dendrograms(Z_struct=Z_struct, prot_names=prot_names, labels=arr_df.index[time_dict['D21']], fig_path=None)
amp.plot_clustering_dendrograms(Z_struct=Z_struct, prot_names=['VN1203', 'Indo05'], labels=arr_df.index, fig_path=fig_path, fig_prefix='Raw_')
"""
2. Raw responses by cluster:
"""
for p, s in zip(['VN1203', 'Indo05'], ['VN1203', 'Indo05']):
amp.plot_raw_responses_by_clusters(raw_arr_df, ind_dict[p], num_clusters, clusters=clusters[p],
fig_path=fig_path, fig_prefix=s + '_Raw', fig_size=(18,11), y_lims=[0, 50000])
"""
3. Median responses by cluster:
"""
for p, s in zip(['VN1203', 'Indo05'], ['VN1203', 'Indo05']):
amp.plot_median_responses_by_clusters(raw_arr_df, ind_dict[p], num_clusters, clusters=clusters[p],
fig_path=fig_path, fig_prefix=s + '_Raw', fig_size=(18,11), y_lims=y_lims)
"""
4. Summary stat boxplots by clusters:
"""
amp.plot_summary_stat_boxplots_by_clusters(raw_arr_df, clusters, ['VN1203', 'Indo05'], arr_summary_stats,
sample_inds=None, fig_path=fig_path)
