def setUpClass(cls):
super(TestGPRNP, cls).setUpClass()
boston = datasets.load_boston()
data = boston['data']
X_train = data[0:500]
X_test = data[500:]
y_train = boston['target'][0:500].reshape(500, 1)
cls.model = GPRNP(length_scale=1.0, magnitude=1.0)
cls.model.fit(X_train, y_train, ridge=1.0)
cls.gpr_result = cls.model.predict(X_test)
def map_workload(target_data):
# Get the latest version of pipeline data that's been computed so far.
latest_pipeline_run = PipelineRun.objects.get_latest()
if target_data['bad']:
assert target_data is not None
return target_data
assert latest_pipeline_run is not None
newest_result = Result.objects.get(pk=target_data['newest_result_id'])
target_workload = newest_result.workload
X_columnlabels = np.array(target_data['X_columnlabels'])
y_columnlabels = np.array(target_data['y_columnlabels'])
# Find all pipeline data belonging to the latest version with the same
# DBMS and hardware as the target
pipeline_data = PipelineData.objects.filter(
pipeline_run=latest_pipeline_run,
workload__dbms=target_workload.dbms,
workload__hardware=target_workload.hardware)
# FIXME (dva): we should also compute the global (i.e., overall) ranked_knobs
# and pruned metrics but we just use those from the first workload for now
initialized = False
global_ranked_knobs = None
global_pruned_metrics = None
ranked_knob_idxs = None
pruned_metric_idxs = None
# Compute workload mapping data for each unique workload
unique_workloads = pipeline_data.values_list('workload',
flat=True).distinct()
assert len(unique_workloads) > 0
workload_data = {}
for unique_workload in unique_workloads:
workload_obj = Workload.objects.get(pk=unique_workload)
wkld_results = Result.objects.filter(workload=workload_obj)
if wkld_results.exists() is False:
# delete the workload
workload_obj.delete()
continue
# Load knob & metric data for this workload
knob_data = load_data_helper(pipeline_data, unique_workload,
PipelineTaskType.KNOB_DATA)
metric_data = load_data_helper(pipeline_data, unique_workload,
PipelineTaskType.METRIC_DATA)
X_matrix = np.array(knob_data["data"])
y_matrix = np.array(metric_data["data"])
rowlabels = np.array(knob_data["rowlabels"])
assert np.array_equal(rowlabels, metric_data["rowlabels"])
if not initialized:
# For now set ranked knobs & pruned metrics to be those computed
# for the first workload
global_ranked_knobs = load_data_helper(
pipeline_data, unique_workload,
PipelineTaskType.RANKED_KNOBS)[:IMPORTANT_KNOB_NUMBER]
global_pruned_metrics = load_data_helper(
pipeline_data, unique_workload,
PipelineTaskType.PRUNED_METRICS)
ranked_knob_idxs = [
i for i in range(X_matrix.shape[1])
if X_columnlabels[i] in global_ranked_knobs
]
pruned_metric_idxs = [
i for i in range(y_matrix.shape[1])
if y_columnlabels[i] in global_pruned_metrics
]
# Filter X & y columnlabels by top ranked_knobs & pruned_metrics
X_columnlabels = X_columnlabels[ranked_knob_idxs]
y_columnlabels = y_columnlabels[pruned_metric_idxs]
initialized = True
# Filter X & y matrices by top ranked_knobs & pruned_metrics
X_matrix = X_matrix[:, ranked_knob_idxs]
y_matrix = y_matrix[:, pruned_metric_idxs]
# Combine duplicate rows (rows with same knob settings)
X_matrix, y_matrix, rowlabels = DataUtil.combine_duplicate_rows(
X_matrix, y_matrix, rowlabels)
workload_data[unique_workload] = {
'X_matrix': X_matrix,
'y_matrix': y_matrix,
'rowlabels': rowlabels,
}
assert len(workload_data) > 0
# Stack all X & y matrices for preprocessing
Xs = np.vstack(
[entry['X_matrix'] for entry in list(workload_data.values())])
ys = np.vstack(
[entry['y_matrix'] for entry in list(workload_data.values())])
# Scale the X & y values, then compute the deciles for each column in y
X_scaler = StandardScaler(copy=False)
X_scaler.fit(Xs)
y_scaler = StandardScaler(copy=False)
y_scaler.fit_transform(ys)
y_binner = Bin(bin_start=1, axis=0)
y_binner.fit(ys)
del Xs
del ys
# Filter the target's X & y data by the ranked knobs & pruned metrics.
X_target = target_data['X_matrix'][:, ranked_knob_idxs]
y_target = target_data['y_matrix'][:, pruned_metric_idxs]
# Now standardize the target's data and bin it by the deciles we just
# calculated
X_target = X_scaler.transform(X_target)
y_target = y_scaler.transform(y_target)
y_target = y_binner.transform(y_target)
scores = {}
for workload_id, workload_entry in list(workload_data.items()):
predictions = np.empty_like(y_target)
X_workload = workload_entry['X_matrix']
X_scaled = X_scaler.transform(X_workload)
y_workload = workload_entry['y_matrix']
y_scaled = y_scaler.transform(y_workload)
for j, y_col in enumerate(y_scaled.T):
# Using this workload's data, train a Gaussian process model
# and then predict the performance of each metric for each of
# the knob configurations attempted so far by the target.
y_col = y_col.reshape(-1, 1)
model = GPRNP(length_scale=DEFAULT_LENGTH_SCALE,
magnitude=DEFAULT_MAGNITUDE,
max_train_size=MAX_TRAIN_SIZE,
batch_size=BATCH_SIZE)
model.fit(X_scaled, y_col, ridge=DEFAULT_RIDGE)
predictions[:, j] = model.predict(X_target).ypreds.ravel()
# Bin each of the predicted metric columns by deciles and then
# compute the score (i.e., distance) between the target workload
# and each of the known workloads
predictions = y_binner.transform(predictions)
dists = np.sqrt(
np.sum(np.square(np.subtract(predictions, y_target)), axis=1))
scores[workload_id] = np.mean(dists)
# Find the best (minimum) score
best_score = np.inf
best_workload_id = None
# scores_info = {workload_id: (workload_name, score)}
scores_info = {}
for workload_id, similarity_score in list(scores.items()):
workload_name = Workload.objects.get(pk=workload_id).name
if similarity_score < best_score:
best_score = similarity_score
best_workload_id = workload_id
best_workload_name = workload_name
scores_info[workload_id] = (workload_name, similarity_score)
target_data['mapped_workload'] = (best_workload_id, best_workload_name,
best_score)
target_data['scores'] = scores_info
return target_data
def map_workload(map_workload_input):
start_ts = time.time()
target_data, algorithm = map_workload_input
if target_data['bad']:
assert target_data is not None
target_data['pipeline_run'] = None
LOG.debug('%s: Skipping workload mapping.\n\ndata=%s\n',
AlgorithmType.name(algorithm),
JSONUtil.dumps(target_data, pprint=True))
return target_data, algorithm
# Get the latest version of pipeline data that's been computed so far.
latest_pipeline_run = PipelineRun.objects.get_latest()
assert latest_pipeline_run is not None
target_data['pipeline_run'] = latest_pipeline_run.pk
newest_result = Result.objects.get(pk=target_data['newest_result_id'])
session = newest_result.session
params = JSONUtil.loads(session.hyperparameters)
target_workload = newest_result.workload
X_columnlabels = np.array(target_data['X_columnlabels'])
y_columnlabels = np.array(target_data['y_columnlabels'])
# Find all pipeline data belonging to the latest version with the same
# DBMS and hardware as the target
pipeline_data = PipelineData.objects.filter(
pipeline_run=latest_pipeline_run,
workload__dbms=target_workload.dbms,
workload__hardware=target_workload.hardware,
workload__project=target_workload.project)
# FIXME (dva): we should also compute the global (i.e., overall) ranked_knobs
# and pruned metrics but we just use those from the first workload for now
initialized = False
global_ranked_knobs = None
global_pruned_metrics = None
ranked_knob_idxs = None
pruned_metric_idxs = None
unique_workloads = pipeline_data.values_list('workload',
flat=True).distinct()
workload_data = {}
# Compute workload mapping data for each unique workload
for unique_workload in unique_workloads:
workload_obj = Workload.objects.get(pk=unique_workload)
wkld_results = Result.objects.filter(workload=workload_obj)
if wkld_results.exists() is False:
# delete the workload
workload_obj.delete()
continue
# Load knob & metric data for this workload
knob_data = load_data_helper(pipeline_data, unique_workload,
PipelineTaskType.KNOB_DATA)
knob_data["data"], knob_data["columnlabels"] = clean_knob_data(
knob_data["data"], knob_data["columnlabels"],
newest_result.session)
metric_data = load_data_helper(pipeline_data, unique_workload,
PipelineTaskType.METRIC_DATA)
X_matrix = np.array(knob_data["data"])
y_matrix = np.array(metric_data["data"])
rowlabels = np.array(knob_data["rowlabels"])
assert np.array_equal(rowlabels, metric_data["rowlabels"])
if not initialized:
# For now set ranked knobs & pruned metrics to be those computed
# for the first workload
global_ranked_knobs = load_data_helper(
pipeline_data, unique_workload, PipelineTaskType.RANKED_KNOBS
)[:params['IMPORTANT_KNOB_NUMBER']]
global_pruned_metrics = load_data_helper(
pipeline_data, unique_workload,
PipelineTaskType.PRUNED_METRICS)
ranked_knob_idxs = [
i for i in range(X_matrix.shape[1])
if X_columnlabels[i] in global_ranked_knobs
]
pruned_metric_idxs = [
i for i in range(y_matrix.shape[1])
if y_columnlabels[i] in global_pruned_metrics
]
# Filter X & y columnlabels by top ranked_knobs & pruned_metrics
X_columnlabels = X_columnlabels[ranked_knob_idxs]
y_columnlabels = y_columnlabels[pruned_metric_idxs]
initialized = True
# Filter X & y matrices by top ranked_knobs & pruned_metrics
X_matrix = X_matrix[:, ranked_knob_idxs]
y_matrix = y_matrix[:, pruned_metric_idxs]
# Combine duplicate rows (rows with same knob settings)
X_matrix, y_matrix, rowlabels = DataUtil.combine_duplicate_rows(
X_matrix, y_matrix, rowlabels)
workload_data[unique_workload] = {
'X_matrix': X_matrix,
'y_matrix': y_matrix,
'rowlabels': rowlabels,
}
if len(workload_data) == 0:
# The background task that aggregates the data has not finished running yet
target_data.update(mapped_workload=None, scores=None)
LOG.debug(
'%s: Skipping workload mapping because there is no parsed workload.\n',
AlgorithmType.name(algorithm))
return target_data, algorithm
# Stack all X & y matrices for preprocessing
Xs = np.vstack(
[entry['X_matrix'] for entry in list(workload_data.values())])
ys = np.vstack(
[entry['y_matrix'] for entry in list(workload_data.values())])
# Scale the X & y values, then compute the deciles for each column in y
X_scaler = StandardScaler(copy=False)
X_scaler.fit(Xs)
y_scaler = StandardScaler(copy=False)
y_scaler.fit_transform(ys)
y_binner = Bin(bin_start=1, axis=0)
y_binner.fit(ys)
del Xs
del ys
# Filter the target's X & y data by the ranked knobs & pruned metrics.
X_target = target_data['X_matrix'][:, ranked_knob_idxs]
y_target = target_data['y_matrix'][:, pruned_metric_idxs]
# Now standardize the target's data and bin it by the deciles we just
# calculated
X_target = X_scaler.transform(X_target)
y_target = y_scaler.transform(y_target)
y_target = y_binner.transform(y_target)
scores = {}
for workload_id, workload_entry in list(workload_data.items()):
predictions = np.empty_like(y_target)
X_workload = workload_entry['X_matrix']
X_scaled = X_scaler.transform(X_workload)
y_workload = workload_entry['y_matrix']
y_scaled = y_scaler.transform(y_workload)
for j, y_col in enumerate(y_scaled.T):
# Using this workload's data, train a Gaussian process model
# and then predict the performance of each metric for each of
# the knob configurations attempted so far by the target.
y_col = y_col.reshape(-1, 1)
if params['GPR_USE_GPFLOW']:
model_kwargs = {
'lengthscales': params['GPR_LENGTH_SCALE'],
'variance': params['GPR_MAGNITUDE'],
'noise_variance': params['GPR_RIDGE']
}
tf.reset_default_graph()
graph = tf.get_default_graph()
gpflow.reset_default_session(graph=graph)
m = gpr_models.create_model(params['GPR_MODEL_NAME'],
X=X_scaled,
y=y_col,
**model_kwargs)
gpr_result = gpflow_predict(m.model, X_target)
else:
model = GPRNP(length_scale=params['GPR_LENGTH_SCALE'],
magnitude=params['GPR_MAGNITUDE'],
max_train_size=params['GPR_MAX_TRAIN_SIZE'],
batch_size=params['GPR_BATCH_SIZE'])
model.fit(X_scaled, y_col, ridge=params['GPR_RIDGE'])
gpr_result = model.predict(X_target)
predictions[:, j] = gpr_result.ypreds.ravel()
# Bin each of the predicted metric columns by deciles and then
# compute the score (i.e., distance) between the target workload
# and each of the known workloads
predictions = y_binner.transform(predictions)
dists = np.sqrt(
np.sum(np.square(np.subtract(predictions, y_target)), axis=1))
scores[workload_id] = np.mean(dists)
# Find the best (minimum) score
best_score = np.inf
best_workload_id = None
best_workload_name = None
scores_info = {}
for workload_id, similarity_score in list(scores.items()):
workload_name = Workload.objects.get(pk=workload_id).name
if similarity_score < best_score:
best_score = similarity_score
best_workload_id = workload_id
best_workload_name = workload_name
scores_info[workload_id] = (workload_name, similarity_score)
target_data.update(mapped_workload=(best_workload_id, best_workload_name,
best_score),
scores=scores_info)
LOG.debug('%s: Finished mapping the workload.\n\ndata=%s\n',
AlgorithmType.name(algorithm),
JSONUtil.dumps(target_data, pprint=True))
save_execution_time(start_ts, "map_workload", newest_result)
return target_data, algorithm
def map_workload(target_data):
# Get the latest version of pipeline data that's been computed so far.
latest_pipeline_run = PipelineRun.objects.get_latest()
if target_data['bad']:
assert target_data is not None
return target_data
assert latest_pipeline_run is not None
newest_result = Result.objects.get(pk=target_data['newest_result_id'])
target_workload = newest_result.workload
X_columnlabels = np.array(target_data['X_columnlabels'])
y_columnlabels = np.array(target_data['y_columnlabels'])
# Find all pipeline data belonging to the latest version with the same
# DBMS and hardware as the target
pipeline_data = PipelineData.objects.filter(
pipeline_run=latest_pipeline_run,
workload__dbms=target_workload.dbms,
workload__hardware=target_workload.hardware)
# FIXME (dva): we should also compute the global (i.e., overall) ranked_knobs
# and pruned metrics but we just use those from the first workload for now
initialized = False
global_ranked_knobs = None
global_pruned_metrics = None
ranked_knob_idxs = None
pruned_metric_idxs = None
# Compute workload mapping data for each unique workload
unique_workloads = pipeline_data.values_list('workload', flat=True).distinct()
assert len(unique_workloads) > 0
workload_data = {}
for unique_workload in unique_workloads:
# Load knob & metric data for this workload
knob_data = load_data_helper(pipeline_data, unique_workload, PipelineTaskType.KNOB_DATA)
metric_data = load_data_helper(pipeline_data, unique_workload, PipelineTaskType.METRIC_DATA)
X_matrix = np.array(knob_data["data"])
y_matrix = np.array(metric_data["data"])
rowlabels = np.array(knob_data["rowlabels"])
assert np.array_equal(rowlabels, metric_data["rowlabels"])
if not initialized:
# For now set ranked knobs & pruned metrics to be those computed
# for the first workload
global_ranked_knobs = load_data_helper(
pipeline_data, unique_workload,
PipelineTaskType.RANKED_KNOBS)[:IMPORTANT_KNOB_NUMBER]
global_pruned_metrics = load_data_helper(
pipeline_data, unique_workload, PipelineTaskType.PRUNED_METRICS)
ranked_knob_idxs = [i for i in range(X_matrix.shape[1]) if X_columnlabels[
i] in global_ranked_knobs]
pruned_metric_idxs = [i for i in range(y_matrix.shape[1]) if y_columnlabels[
i] in global_pruned_metrics]
# Filter X & y columnlabels by top ranked_knobs & pruned_metrics
X_columnlabels = X_columnlabels[ranked_knob_idxs]
y_columnlabels = y_columnlabels[pruned_metric_idxs]
initialized = True
# Filter X & y matrices by top ranked_knobs & pruned_metrics
X_matrix = X_matrix[:, ranked_knob_idxs]
y_matrix = y_matrix[:, pruned_metric_idxs]
# Combine duplicate rows (rows with same knob settings)
X_matrix, y_matrix, rowlabels = DataUtil.combine_duplicate_rows(
X_matrix, y_matrix, rowlabels)
workload_data[unique_workload] = {
'X_matrix': X_matrix,
'y_matrix': y_matrix,
'rowlabels': rowlabels,
}
# Stack all X & y matrices for preprocessing
Xs = np.vstack([entry['X_matrix'] for entry in list(workload_data.values())])
ys = np.vstack([entry['y_matrix'] for entry in list(workload_data.values())])
# Scale the X & y values, then compute the deciles for each column in y
X_scaler = StandardScaler(copy=False)
X_scaler.fit(Xs)
y_scaler = StandardScaler(copy=False)
y_scaler.fit_transform(ys)
y_binner = Bin(bin_start=1, axis=0)
y_binner.fit(ys)
del Xs
del ys
# Filter the target's X & y data by the ranked knobs & pruned metrics.
X_target = target_data['X_matrix'][:, ranked_knob_idxs]
y_target = target_data['y_matrix'][:, pruned_metric_idxs]
# Now standardize the target's data and bin it by the deciles we just
# calculated
X_target = X_scaler.transform(X_target)
y_target = y_scaler.transform(y_target)
y_target = y_binner.transform(y_target)
scores = {}
for workload_id, workload_entry in list(workload_data.items()):
predictions = np.empty_like(y_target)
X_workload = workload_entry['X_matrix']
X_scaled = X_scaler.transform(X_workload)
y_workload = workload_entry['y_matrix']
y_scaled = y_scaler.transform(y_workload)
for j, y_col in enumerate(y_scaled.T):
# Using this workload's data, train a Gaussian process model
# and then predict the performance of each metric for each of
# the knob configurations attempted so far by the target.
y_col = y_col.reshape(-1, 1)
model = GPRNP(length_scale=DEFAULT_LENGTH_SCALE,
magnitude=DEFAULT_MAGNITUDE,
max_train_size=MAX_TRAIN_SIZE,
batch_size=BATCH_SIZE)
model.fit(X_scaled, y_col, ridge=DEFAULT_RIDGE)
predictions[:, j] = model.predict(X_target).ypreds.ravel()
# Bin each of the predicted metric columns by deciles and then
# compute the score (i.e., distance) between the target workload
# and each of the known workloads
predictions = y_binner.transform(predictions)
dists = np.sqrt(np.sum(np.square(
np.subtract(predictions, y_target)), axis=1))
scores[workload_id] = np.mean(dists)
# Find the best (minimum) score
best_score = np.inf
best_workload_id = None
for workload_id, similarity_score in list(scores.items()):
if similarity_score < best_score:
best_score = similarity_score
best_workload_id = workload_id
target_data['mapped_workload'] = (best_workload_id, best_score)
target_data['scores'] = scores
return target_data