Python compare_sorf_srna示例

示例#1

 def test_compare_sorf_srna(self):
     sorfs = [{
         "strain": "aaa",
         "strand": "+",
         "start": 2,
         "end": 6,
         "starts": [str(2)],
         "ends": [str(10)],
         "seq": "ATGTA",
         "type": "3utr",
         "print": False,
         "rbs": [1]
     }]
     sd.compare_sorf_srna(sorfs, self.example.srnas, "test")
     self.assertListEqual(sorfs, [{
         'print': False,
         'starts': ['2'],
         'seq': 'ATGTA',
         'strand': '+',
         'srna': ['srna0:5-8_f'],
         'end': 6,
         'rbs': [1],
         'ends': ['10'],
         'start': 2,
         'strain': 'aaa',
         'type': '3utr'
     }])

示例#2

文件： test_sORF_detection.py 项目： malvikasharan/ANNOgesic

 def test_compare_sorf_srna(self):
     sorfs = [{"strain": "aaa", "strand": "+", "start": 2, "end": 6,
              "starts": [str(2)], "ends": [str(10)], "seq": "ATGTA",
              "type": "3utr", "print": False, "rbs": [1]}]
     sd.compare_sorf_srna(sorfs, self.example.srnas, "test")
     self.assertListEqual(sorfs, [{'print': False, 'starts': ['2'], 'seq': 'ATGTA', 'strand': '+',
                                   'srna': ['srna0:5-8_f'], 'end': 6, 'rbs': [1], 'ends': ['10'],
                                   'start': 2, 'strain': 'aaa', 'type': '3utr'}])