def test_get_cutoff(self):
sorf = {"strain": "aaa", "strand": "+", "start": 2, "end": 6,
"starts": [str(2)], "ends": [str(10)], "seq": "ATGTA",
"type": "3utr", "print": False, "rbs": [1], "start_TSS": "1"}
coverages = {"3utr": "median", "5utr": 20, "interCDS": 11, "intergenic": 59}
medians = {"aaa": {"3utr": {"track_1": {"median": 50, "mean": 20}}}}
cutoff = sd.get_cutoff(sorf, "track_1", coverages, medians)
self.assertEqual(cutoff, 50)
def test_get_cutoff(self):
sorf = {"strain": "aaa", "strand": "+", "start": 2, "end": 6,
"starts": [str(2)], "ends": [str(10)], "seq": "ATGTA",
"type": "3utr", "print": False, "rbs": [1], "start_TSS": "1"}
coverages = {"3utr": "median", "5utr": 20, "interCDS": 11, "intergenic": 59}
medians = {"aaa": {"3utr": {"track_1": {"median": 50, "mean": 20}}}}
cutoff = sd.get_cutoff(sorf, "track_1", coverages, medians)
self.assertEqual(cutoff, 50)