Python species_to_taxon_id示例

示例#1

 def _get_species(self, row):
     if self.species_column_index is not None:
         try:
             species_name = row[self.species_column_index].strip()
             taxon_id_options = species_to_taxon_id(species_name)
             if len(taxon_id_options) > 1:
                 logger.warn(
                     "Using first out of multiple taxon ids found for "
                     "%s: %s", species_name, taxon_id_options)
             return taxon_id_options[0][1]
         except Taxon.DoesNotExist:
             return None
     return None

示例#2

文件： single_file_column_parser.py 项目： winhide-shef/refinery-platform

 def _get_species(self, row):
     if self.species_column_index is not None:
         try:
             species_name = row[self.species_column_index].strip()
             taxon_id_options = species_to_taxon_id(species_name)
             if len(taxon_id_options) > 1:
                 logger.warn(
                     "Using first out of multiple taxon ids found for "
                     "%s: %s", species_name, taxon_id_options)
             return taxon_id_options[0][1]
         except Taxon.DoesNotExist:
             return None
     return None