def test_editable_fetch_find(galaxy_context, mocker, tmpdir):
name = 'mazer_fetch_test_editable'
namespace_override = 'some_editable_namespace'
tmp_path = tmpdir.mkdir(name)
more_reqs = requirements.from_dependencies_dict(
{tmp_path.strpath: '*'},
namespace_override=namespace_override,
editable=True)
import pprint
log.debug('more_reqs: %s', pprint.pformat(more_reqs))
req_spec = more_reqs[0].requirement_spec
fetcher = editable.EditableFetch(galaxy_context, req_spec)
log.debug(fetcher)
res = fetcher.find()
log.debug('res: %s', res)
assert isinstance(res, dict)
assert res['content']['galaxy_namespace'] == namespace_override
assert res['content']['repo_name'] == name
assert res['custom']['real_path'] == tmp_path.strpath
def get(galaxy_context, repository_spec):
"""determine how to download a repo, builds a fetch instance, and returns the instance"""
fetcher = None
# FIXME: note that ignore_certs for the galaxy
# server(galaxy_context.server['ignore_certs'])
# does not really imply that the repo archive download should ignore certs as well
# (galaxy api server vs cdn) but for now, we use the value for both
if repository_spec.fetch_method == FetchMethods.EDITABLE:
fetcher = editable.EditableFetch(repository_spec=repository_spec,
galaxy_context=galaxy_context)
elif repository_spec.fetch_method == FetchMethods.SCM_URL:
fetcher = scm_url.ScmUrlFetch(repository_spec=repository_spec)
elif repository_spec.fetch_method == FetchMethods.LOCAL_FILE:
# the file is a tar, so open it that way and extract it
# to the specified (or default) content directory
fetcher = local_file.LocalFileFetch(repository_spec)
elif repository_spec.fetch_method == FetchMethods.REMOTE_URL:
fetcher = remote_url.RemoteUrlFetch(
repository_spec=repository_spec,
validate_certs=not galaxy_context.server['ignore_certs'])
elif repository_spec.fetch_method == FetchMethods.GALAXY_URL:
fetcher = galaxy_url.GalaxyUrlFetch(repository_spec=repository_spec,
galaxy_context=galaxy_context)
else:
raise exceptions.GalaxyError(
'No approriate content fetcher found for %s %s',
repository_spec.scm, repository_spec.src)
log.debug('Using fetcher: %s for repository_spec: %r', fetcher,
repository_spec)
return fetcher
def test_editable_fetch_fetch(galaxy_context, mocker, tmpdir):
name = 'mazer_fetch_test_editable'
namespace_override = 'some_editable_namespace'
tmp_working_path = tmpdir.mkdir('some_working_tree')
dest_tmp_path = tmp_working_path.mkdir('some_checkout')
req_spec = RequirementSpec(namespace=namespace_override,
name=name,
fetch_method='EDITABLE',
src=dest_tmp_path,
version_spec='*')
# RepositorySpec(namespace='some_editable_namespace', name='some_checkout',
# version=None, fetch_method='EDITABLE', scm=None,
# spec_string='/tmp/pytest-of-adrian/pytest-79/test_editable_fetch_fetch0/some_checkout',
# src='/tmp/pytest-of-adrian/pytest-79/test_editable_fetch_fetch0/some_checkout')
log.debug('req_spec: %r', req_spec)
fetcher = editable.EditableFetch(galaxy_context, req_spec)
find_results = {
'custom': {
'real_path': dest_tmp_path.strpath
},
'content': []
}
res = fetcher.fetch(find_results=find_results)
log.debug('res: %s', res)
expected_link_name = os.path.join(galaxy_context.collections_path,
COLLECTIONS_PYTHON_NAMESPACE,
namespace_override, name)
log.debug('expected_link_name: %s', expected_link_name)
assert isinstance(res, dict)
assert res['archive_path'] == dest_tmp_path.strpath
assert res['custom']['symlinked_repo_root'] == expected_link_name
def test_editable_fetch_find(galaxy_context, mocker, tmpdir):
name = 'mazer_fetch_test_editable'
namespace_override = 'some_editable_namespace'
tmp_path = tmpdir.mkdir(name)
more_reqs = requirements.from_requirement_spec_strings(
[tmp_path.strpath],
namespace_override=namespace_override,
editable=True)
repo_spec = more_reqs[0].requirement_spec
fetcher = editable.EditableFetch(galaxy_context, repo_spec)
log.debug(fetcher)
res = fetcher.find()
log.debug('res: %s', res)
assert isinstance(res, dict)
assert res['content']['galaxy_namespace'] == namespace_override
assert res['content']['repo_name'] == name
assert res['custom']['real_path'] == tmp_path.strpath
