def setUp(self):
options = build_config(self.get_args(), isolated=True, modules=get_all_modules())
self.old_config = get_config().__dict__
self.options = update_config(options)
assert clusterblast.check_prereqs(self.options) == []
assert clusterblast.check_options(self.options) == []
assert clusterblast.is_enabled(self.options)
def test_mounted_at_runtime(self, _mocked_prep_known):
options = config.update_config({
"database_dir": "/mounted_at_runtime",
"executables": {
"diamond": "/some/path"
},
})
error = RuntimeError(
"check_clusterblast_files called when it shouldn't have been")
with patch.object(clusterblast,
"check_clusterblast_files",
side_effect=error):
clusterblast.check_prereqs(options)
options = config.update_config({"database_dir": "/path"})
with patch.object(clusterblast, "check_clusterblast_files",
returns=[]) as check:
clusterblast.check_prereqs(options)
check.assert_called_once()