class DictGraphTest(unittest.TestCase): def setUp(self): self.graph = DictGraph() self.graph.addEdge(0, 1, 1) self.graph.addEdge(1, 3, 1) self.graph.addEdge(0, 2, 2) self.graph.addEdge(2, 3, 5) self.graph.addEdge(0, 4, 1) self.graph.addEdge(3, 4, 1) self.graph.setVertex(5, None) self.graph2 = DictGraph(False) self.graph2.addEdge(0, 1, 1) self.graph2.addEdge(1, 3, 1) self.graph2.addEdge(0, 2, 2) self.graph2.addEdge(2, 3, 5) self.graph2.addEdge(0, 4, 1) self.graph2.addEdge(3, 4, 1) self.graph2.setVertex(5, 1) def testInit(self): dictGraph = DictGraph() def testAddEdge(self): dictGraph = DictGraph() dictGraph.addEdge("A", "B", [1,2,3]) dictGraph.addEdge("A", "C", "HelloThere") dictGraph.addEdge(12, 8, [1,2,3, 12]) self.assertEquals(dictGraph.getEdge("A", "B"), [1,2,3]) self.assertEquals(dictGraph.getEdge("B", "A"), [1,2,3]) self.assertEquals(dictGraph.getEdge("A", "C"), "HelloThere") self.assertEquals(dictGraph.getEdge("C", "A"), "HelloThere") self.assertEquals(dictGraph.getEdge(12, 8), [1,2,3, 12]) self.assertEquals(dictGraph.getEdge(8, 12), [1,2,3, 12]) dictGraph.addEdge(2, 8) dictGraph = DictGraph(False) dictGraph.addEdge("A", "B", [1,2,3]) dictGraph.addEdge("A", "C", "HelloThere") dictGraph.addEdge(12, 8, [1,2,3, 12]) self.assertEquals(dictGraph.getEdge("A", "B"), [1,2,3]) self.assertEquals(dictGraph.getEdge("B", "A"), None) self.assertEquals(dictGraph.getEdge("A", "C"), "HelloThere") self.assertEquals(dictGraph.getEdge("C", "A"), None) self.assertEquals(dictGraph.getEdge(12, 8), [1,2,3, 12]) self.assertEquals(dictGraph.getEdge(8, 12), None) dictGraph.addEdge(2, 8) #Test directed graphs def testRemoveEdge(self): dictGraph = DictGraph() dictGraph.addEdge(1, 2, 12) dictGraph.addEdge(1, 3, 18) dictGraph.addEdge(3, 4, 1) self.assertEquals(dictGraph.getEdge(1, 2), 12) self.assertEquals(dictGraph.getEdge(1, 3), 18) self.assertEquals(dictGraph.getEdge(3, 4), 1) dictGraph.removeEdge(1, 3) self.assertEquals(dictGraph.getEdge(1, 3), None) self.assertEquals(dictGraph.getEdge(1, 2), 12) self.assertEquals(dictGraph.getEdge(3, 4), 1) #Some tests on directed graphs dictGraph = DictGraph(False) dictGraph.addEdge(1, 2, 12) dictGraph.addEdge(2, 1, 12) dictGraph.removeEdge(1, 2) self.assertEquals(dictGraph.getEdge(1, 2), None) self.assertEquals(dictGraph.getEdge(2, 1), 12) def testIsUndirected(self): dictGraph = DictGraph(True) self.assertEquals(dictGraph.isUndirected(), True) dictGraph = DictGraph(False) self.assertEquals(dictGraph.isUndirected(), False) def testGetNumEdges(self): dictGraph = DictGraph(True) self.assertEquals(dictGraph.getNumEdges(), 0) dictGraph.addEdge(1, 2, 12) dictGraph.addEdge(1, 3, 18) dictGraph.addEdge(3, 4, 1) self.assertEquals(dictGraph.getNumEdges(), 3) dictGraph.addEdge(3, 4, 1) self.assertEquals(dictGraph.getNumEdges(), 3) dictGraph.addEdge(3, 5, 1) self.assertEquals(dictGraph.getNumEdges(), 4) dictGraph.addEdge(3, 3, 1) self.assertEquals(dictGraph.getNumEdges(), 5) #Identical tests with directed graphs dictGraph = DictGraph(False) self.assertEquals(dictGraph.getNumEdges(), 0) dictGraph.addEdge(1, 2, 12) dictGraph.addEdge(1, 3, 18) dictGraph.addEdge(3, 4, 1) self.assertEquals(dictGraph.getNumEdges(), 3) dictGraph.addEdge(3, 4, 1) self.assertEquals(dictGraph.getNumEdges(), 3) dictGraph.addEdge(3, 5, 1) self.assertEquals(dictGraph.getNumEdges(), 4) dictGraph.addEdge(3, 3, 1) self.assertEquals(dictGraph.getNumEdges(), 5) def testGetEdge(self): dictGraph = DictGraph(True) dictGraph.addEdge(1, 2, 12) self.assertEquals(dictGraph.getEdge(1, 2), 12) self.assertEquals(dictGraph.getEdge(2, 1), 12) self.assertEquals(dictGraph.getEdge(2, 2), None) self.assertRaises(ValueError, dictGraph.getEdge, 5, 8) dictGraph = DictGraph(False) dictGraph.addEdge(1, 2, 12) self.assertEquals(dictGraph.getEdge(1, 2), 12) self.assertEquals(dictGraph.getEdge(2, 1), None) def testGetNeighbours(self): dictGraph = DictGraph(True) dictGraph.addEdge(1, 2, 12) dictGraph.addEdge(1, 3, 18) dictGraph.addEdge(1, 4, 1) dictGraph.addEdge(3, 4, 1) dictGraph.addEdge(2, 2, 1) dictGraph.setVertex(5, 12) self.assertEquals(dictGraph.neighbours(1), [2, 3, 4]) self.assertEquals(dictGraph.neighbours(3), [1, 4]) self.assertEquals(dictGraph.neighbours(2), [1, 2]) self.assertEquals(dictGraph.neighbours(5), []) #Directed graphs dictGraph = DictGraph(False) dictGraph.addEdge(1, 2, 12) dictGraph.addEdge(1, 3, 18) dictGraph.addEdge(1, 4, 1) dictGraph.addEdge(3, 4, 1) dictGraph.addEdge(2, 2, 1) dictGraph.setVertex(5, 12) self.assertEquals(dictGraph.neighbours(1), [2,3,4]) self.assertEquals(dictGraph.neighbours(3), [4]) self.assertEquals(dictGraph.neighbours(2), [2]) self.assertEquals(dictGraph.neighbours(5), []) def testGetVertex(self): dictGraph = DictGraph(True) dictGraph.addEdge(1, 2, 12) dictGraph.addEdge(1, 3, 18) dictGraph.setVertex(5, 12) self.assertEquals(dictGraph.getVertex(1), None) self.assertEquals(dictGraph.getVertex(2), None) self.assertEquals(dictGraph.getVertex(3), None) self.assertEquals(dictGraph.getVertex(5), 12) self.assertRaises(ValueError, dictGraph.getVertex, 4) #Directed graphs dictGraph = DictGraph(False) dictGraph.addEdge(1, 2, 12) dictGraph.addEdge(1, 3, 18) dictGraph.setVertex(5, 12) self.assertEquals(dictGraph.getVertex(1), None) self.assertEquals(dictGraph.getVertex(2), None) self.assertEquals(dictGraph.getVertex(3), None) self.assertEquals(dictGraph.getVertex(5), 12) self.assertRaises(ValueError, dictGraph.getVertex, 4) def testAddVertex(self): dictGraph = DictGraph(True) dictGraph.addEdge(1, 2, 12) dictGraph.addEdge(1, 3, 18) dictGraph.setVertex(5, 12) self.assertEquals(dictGraph.getVertex(5), 12) dictGraph.setVertex(5, 22) self.assertEquals(dictGraph.getVertex(5), 22) dictGraph.addEdge(5, 11, 18) self.assertEquals(dictGraph.getVertex(5), 22) def testGetAllVertexIds(self): dictGraph = DictGraph(True) dictGraph.addEdge(1, 2, 12) dictGraph.addEdge(1, 3, 18) dictGraph.setVertex(5, 12) self.assertEquals(dictGraph.getAllVertexIds(), [1, 2, 3, 5]) def testGetAllEdges(self): dictGraph = DictGraph(True) dictGraph.setVertex(5, 12) dictGraph.addEdge(1, 2, 12) dictGraph.addEdge(1, 3, 18) edges = dictGraph.getAllEdges() self.assertEquals(len(edges), 2) self.assertTrue((1,2) in edges) self.assertTrue((1,3) in edges) dictGraph = DictGraph(False) dictGraph.setVertex(5, 12) dictGraph.addEdge(1, 2, 12) dictGraph.addEdge(2, 1, 12) dictGraph.addEdge(1, 3, 18) edges = dictGraph.getAllEdges() self.assertEquals(len(edges), 3) self.assertTrue((1,2) in edges) self.assertTrue((2,1) in edges) self.assertTrue((1,3) in edges) def testDensity(self): numVertices = 10 graph = DictGraph(True) for i in range(numVertices): graph.setVertex(i, 0) graph.addEdge(0, 1) self.assertEquals(graph.density(), float(1)/45) graph.addEdge(0, 2) self.assertEquals(graph.density(), float(2)/45) graph = DictGraph(False) for i in range(numVertices): graph.setVertex(i, 0) graph.addEdge(0, 1) self.assertEquals(graph.density(), float(1)/90) graph.addEdge(0, 2) self.assertEquals(graph.density(), float(2)/90) #Test a graph with 1 vertex graph = DictGraph(True) graph.setVertex(0, 12) self.assertEquals(graph.density(), 0) graph.addEdge(0, 0) self.assertEquals(graph.density(), 1) def testSetVertices(self): graph = DictGraph() vertexIndices = [1, 2, 3] vertices = ["a", "b", "c"] graph.setVertices(vertexIndices, vertices) vertexIndices2 = graph.getAllVertexIds() vertices2 = graph.getVertices(vertexIndices2) self.assertEquals(vertexIndices, vertexIndices2) self.assertEquals(vertices, vertices2) def testGetWeightMatrix(self): graph = DictGraph() graph.addEdge("a", "b") graph.addEdge("a", "c") graph.addEdge("a", "d") graph.addEdge("d", "e") W = graph.getWeightMatrix() keys = graph.getAllVertexIds() for i in range(len(keys)): for j in range(len(keys)): if W[i, j] == 1: self.assertEquals(graph.getEdge(keys[i], keys[j]), 1) else: self.assertEquals(graph.getEdge(keys[i], keys[j]), None) #Try a directed graph graph = DictGraph(False) graph.addEdge("a", "b") graph.addEdge("a", "c") graph.addEdge("a", "d") graph.addEdge("d", "e") W = graph.getWeightMatrix() for i in range(len(keys)): for j in range(len(keys)): if W[i, j] == 1: self.assertEquals(graph.getEdge(keys[i], keys[j]), 1) else: self.assertEquals(graph.getEdge(keys[i], keys[j]), None) def testGetSparseWeightMatrix(self): graph = DictGraph() graph.addEdge("a", "b") graph.addEdge("a", "c") graph.addEdge("a", "d", "blah") graph.addEdge("d", "e", -1.1) graph.addEdge("c", "b", 2) W = graph.getSparseWeightMatrix() keys = graph.getAllVertexIds() for i in range(len(keys)): for j in range(len(keys)): if graph.edgeExists(keys[i], keys[j]) and not isinstance(graph.getEdge(keys[i], keys[j]), numbers.Number): self.assertEquals(1, W[i, j]) elif W[i, j] != 0: self.assertEquals(graph.getEdge(keys[i], keys[j]), W[i, j]) else: self.assertEquals(graph.getEdge(keys[i], keys[j]), None) #Try a directed graph graph = DictGraph(False) graph.addEdge("a", "b") graph.addEdge("a", "c", "test") graph.addEdge("a", "d") graph.addEdge("d", "e") graph.addEdge("c", "a", 0.1) W = graph.getSparseWeightMatrix() for i in range(len(keys)): for j in range(len(keys)): if graph.edgeExists(keys[i], keys[j]) and not isinstance(graph.getEdge(keys[i], keys[j]), numbers.Number): self.assertEquals(1, W[i, j]) elif W[i, j] != 0: self.assertEquals(graph.getEdge(keys[i], keys[j]), W[i, j]) else: self.assertEquals(graph.getEdge(keys[i], keys[j]), None) def testGetAllEdgeIndices(self): graph = DictGraph() graph.addEdge("a", "b") graph.addEdge("a", "c") graph.addEdge("a", "d") graph.addEdge("d", "e") edgeIndices = graph.getAllEdgeIndices() keys = graph.getAllVertexIds() self.assertEquals(edgeIndices.shape[0], graph.getNumEdges()) for i in range(edgeIndices.shape[0]): self.assertTrue(graph.getEdge(keys[int(edgeIndices[i, 0])], keys[edgeIndices[i, 1]]) == 1) graph = DictGraph(False) graph.addEdge("a", "b") graph.addEdge("b", "a") graph.addEdge("a", "c") graph.addEdge("a", "d") graph.addEdge("d", "e") edgeIndices = graph.getAllEdgeIndices() keys = graph.getAllVertexIds() self.assertEquals(edgeIndices.shape[0], graph.getNumEdges()) for i in range(edgeIndices.shape[0]): self.assertTrue(graph.getEdge(keys[int(edgeIndices[i, 0])], keys[edgeIndices[i, 1]]) == 1) def testGetItem(self): graph = DictGraph() graph.addEdge(1, 1, 0.1) graph.addEdge(1, 3, 0.5) graph.addEdge(2, 4, 1) graph.addEdge(2, 3, 2) graph.setVertex(0, "abc") self.assertEquals(graph[1,1], 0.1) self.assertEquals(graph[1,3], 0.5) def testSetItem(self): graph = DictGraph() graph.addEdge(1, 1, 0.1) graph.addEdge(1, 3, 0.5) self.assertEquals(graph[1,3], 0.5) graph[1, 3] = 2 self.assertEquals(graph[1,3], 2) def testAddEdges(self): graph = DictGraph() edgeList = [(1, 2), (2, 1), (5, 2), (8, 8)] graph.addEdges(edgeList) self.assertEquals(graph.getNumEdges(), 3) self.assertEquals(graph.getEdge(1, 2), 1) self.assertEquals(graph.getEdge(5, 2), 1) self.assertEquals(graph.getEdge(2, 1), 1) self.assertEquals(graph.getEdge(8, 8), 1) edgeValues = [1, 2, 3, 4] graph.addEdges(edgeList, edgeValues) self.assertEquals(graph.getEdge(1, 2), 2) self.assertEquals(graph.getEdge(5, 2), 3) self.assertEquals(graph.getEdge(2, 1), 2) self.assertEquals(graph.getEdge(8, 8), 4) #Now test directed graphs graph = DictGraph(False) graph.addEdges(edgeList) self.assertEquals(graph.getNumEdges(), 4) self.assertEquals(graph.getEdge(1, 2), 1) self.assertEquals(graph.getEdge(5, 2), 1) self.assertEquals(graph.getEdge(2, 1), 1) self.assertEquals(graph.getEdge(8, 8), 1) edgeValues = [1, 2, 3, 4] graph.addEdges(edgeList, edgeValues) self.assertEquals(graph.getEdge(1, 2), 1) self.assertEquals(graph.getEdge(5, 2), 3) self.assertEquals(graph.getEdge(2, 1), 2) self.assertEquals(graph.getEdge(8, 8), 4) def testSubgraph(self): graph = DictGraph() graph.addEdge(0, 1) graph.addEdge(0, 2) graph.addEdge(0, 3) graph.addEdge(1, 2) graph.addEdge(2, 3) graph.setVertex(0, "abc") graph.setVertex(3, "cde") self.assertEquals(graph.getNumEdges(), 5) subgraph = graph.subgraph([0, 1, 2]) self.assertEquals(subgraph.getNumVertices(), 3) self.assertEquals(subgraph.getNumEdges(), 3) self.assertEquals(subgraph.isUndirected(), True) self.assertEquals(subgraph.getEdge(0, 1), 1) self.assertEquals(subgraph.getEdge(0, 2), 1) self.assertEquals(subgraph.getEdge(1, 2), 1) self.assertEquals(subgraph.getVertex(0), "abc") #Check the original graph is fine self.assertEquals(graph.getNumVertices(), 4) self.assertEquals(graph.getNumEdges(), 5) self.assertEquals(graph.getVertex(0), "abc") self.assertEquals(graph.getVertex(3), "cde") #Now a quick test for directed graphs graph = DictGraph(False) graph.addEdge(0, 1) graph.addEdge(0, 2) graph.addEdge(0, 3) graph.addEdge(1, 2) graph.addEdge(2, 3) subgraph = graph.subgraph([0, 1, 2]) self.assertEquals(subgraph.getNumEdges(), 3) self.assertEquals(subgraph.isUndirected(), False) self.assertEquals(subgraph.getEdge(0, 1), 1) self.assertEquals(subgraph.getEdge(0, 2), 1) self.assertEquals(subgraph.getEdge(1, 2), 1) def testNeighbourOf(self): graph = DictGraph(True) graph.addEdge(0, 1) graph.addEdge(0, 2) graph.addEdge(0, 3) graph.addEdge(1, 2) graph.addEdge(2, 3) for i in range(4): self.assertEquals(graph.neighbours(i), graph.neighbourOf(i)) #Now test directed graph graph = DictGraph(False) graph.addEdge(0, 1) graph.addEdge(0, 2) graph.addEdge(0, 3) graph.addEdge(1, 2) graph.addEdge(2, 3) self.assertEquals(graph.neighbourOf(0), []) self.assertEquals(graph.neighbourOf(1), [0]) self.assertEquals(graph.neighbourOf(2), [0,1]) self.assertEquals(graph.neighbourOf(3), [0, 2]) def testOutDegreeSequence(self): graph = DictGraph(True) graph.addEdge(0, 1) graph.addEdge(0, 2) graph.addEdge(0, 3) graph.addEdge(1, 2) graph.addEdge(2, 3) degSeq, vertices = graph.outDegreeSequence() self.assertTrue((degSeq == numpy.array([ 3, 2, 3, 2.])).all()) self.assertTrue(vertices == [0, 1, 2, 3]) #Test results on a directed graph graph = DictGraph(False) graph.addEdge(0, 1) graph.addEdge(0, 2) graph.addEdge(0, 3) graph.addEdge(1, 2) graph.addEdge(2, 3) degSeq, vertices = graph.outDegreeSequence() self.assertTrue((degSeq == numpy.array([ 3, 1, 1, 0])).all()) def testInDegreeSequence(self): graph = DictGraph(True) graph.addEdge(0, 1) graph.addEdge(0, 2) graph.addEdge(0, 3) graph.addEdge(1, 2) graph.addEdge(2, 3) degSeq, vertices = graph.inDegreeSequence() self.assertTrue((degSeq == numpy.array([ 3, 2, 3, 2.])).all()) self.assertTrue(vertices == [0, 1, 2, 3]) #Test results on a directed graph graph = DictGraph(False) graph.addEdge(0, 1) graph.addEdge(0, 2) graph.addEdge(0, 3) graph.addEdge(1, 2) graph.addEdge(2, 3) degSeq, vertices = graph.inDegreeSequence() self.assertTrue((degSeq == numpy.array([ 0, 1, 2, 2])).all()) def testVertexExists(self): graph = DictGraph(False) graph.addEdge(0, 1) graph.addEdge(0, 2) graph.addEdge(0, 3) graph.addEdge(1, 2) graph.addEdge(2, 3) self.assertTrue(graph.vertexExists(0)) self.assertTrue(graph.vertexExists(1)) self.assertTrue(graph.vertexExists(2)) self.assertTrue(graph.vertexExists(3)) self.assertFalse(graph.vertexExists(4)) def testRemoveVertex(self): graph = DictGraph() graph.addEdge(0, 1) graph.addEdge(0, 2) graph.addEdge(0, 3) graph.addEdge(1, 2) graph.addEdge(2, 3) graph.addEdge(3, 4) graph.removeVertex(4) self.assertFalse(graph.vertexExists(4)) self.assertFalse(graph.edgeExists(3, 4)) graph.removeVertex(3) self.assertFalse(graph.vertexExists(3)) self.assertFalse(graph.edgeExists(2, 3)) self.assertFalse(graph.edgeExists(0, 3)) graph.removeVertex(2) self.assertFalse(graph.vertexExists(2)) self.assertFalse(graph.edgeExists(1, 2)) self.assertFalse(graph.edgeExists(0, 2)) self.assertTrue(graph.getAllVertexIds() == [0, 1]) self.assertTrue(graph.getAllEdges() == [(0, 1)]) #Try directed graph graph = DictGraph(False) graph.addEdge(0, 1) graph.addEdge(1, 0) graph.addEdge(0, 3) graph.addEdge(1, 2) graph.addEdge(2, 3) graph.addEdge(3, 4) graph.removeVertex(0) self.assertFalse(graph.vertexExists(0)) self.assertFalse(graph.edgeExists(0, 1)) self.assertFalse(graph.edgeExists(0, 3)) self.assertFalse(graph.edgeExists(1, 0)) graph.removeVertex(2) self.assertFalse(graph.vertexExists(2)) self.assertFalse(graph.edgeExists(1, 2)) self.assertFalse(graph.edgeExists(2, 3)) self.assertTrue(graph.getAllVertexIds() == [1, 3, 4]) self.assertTrue(graph.getAllEdges() == [(3, 4)]) def testToSparseGraph(self): graph = DictGraph() graph.addEdge(0, 1) graph.addEdge(0, 2) graph.addEdge(0, 3) graph.addEdge(1, 2) graph.addEdge(2, 3) graph.addEdge(3, 4) graph2 = graph.toSparseGraph() self.assertEquals(graph2[0, 1], 1) self.assertEquals(graph2[0, 2], 1) self.assertEquals(graph2[0, 3], 1) self.assertEquals(graph2[2, 1], 1) self.assertEquals(graph2[2, 3], 1) self.assertEquals(graph2[3, 4], 1) def testDepthFirstSearch(self): graph = DictGraph() graph.addEdge(0, 1) graph.addEdge(1, 2) graph.addEdge(1, 3) graph.addEdge(2, 6) graph.addEdge(4, 5) self.assertEquals(graph.depthFirstSearch(0), [0,1,2,6,3]) self.assertEquals(graph.depthFirstSearch(1), [1,0,2,6,3]) self.assertEquals(graph.depthFirstSearch(6), [6,2,1,0,3]) self.assertEquals(graph.depthFirstSearch(4), [4, 5]) self.assertEquals(graph.depthFirstSearch(5), [5, 4]) def testBreadthFirstSearch(self): graph = DictGraph() graph.addEdge(0, 1) graph.addEdge(0, 7) graph.addEdge(7, 8) graph.addEdge(7, 9) graph.addEdge(1, 2) graph.addEdge(1, 3) graph.addEdge(2, 6) graph.addEdge(4, 5) self.assertEquals(graph.breadthFirstSearch(0), [0,1, 7,2,3,8,9,6]) self.assertEquals(graph.breadthFirstSearch(1), [1,0,2,3,7,6,8,9]) self.assertEquals(graph.breadthFirstSearch(6), [6, 2,1,0,3,7,8,9]) self.assertEquals(graph.breadthFirstSearch(4), [4, 5]) self.assertEquals(graph.breadthFirstSearch(5), [5, 4]) self.assertEquals(graph.breadthFirstSearch(7), [7, 0, 8, 9, 1, 2, 3, 6]) def testDegreeSequence(self): graph = DictGraph() graph.setVertex("a", 10) graph["b", "c"] = 1 graph["b", "d"] = 1 graph["d", "e"] = 1 graph["e", "e"] = 1 degreeDict = {} degreeDict2 = {"a": 0, "b": 2, "c": 1, "d": 2, "e": 3} for i, id in enumerate(graph.getAllVertexIds()): degreeDict[id] = graph.degreeSequence()[i] self.assertEquals(degreeDict, degreeDict2) def testGetNumDirEdges(self): graph = DictGraph() graph.addEdge(0, 1, 0.1) graph.addEdge(1, 2, 0.1) self.assertTrue(graph.getNumDirEdges() == 4) graph.addEdge(1, 1) self.assertTrue(graph.getNumDirEdges() == 5) graph = DictGraph(False) graph.addEdge(0, 1) graph.addEdge(1, 2) self.assertTrue(graph.getNumDirEdges() == 2) graph.addEdge(1, 1) self.assertTrue(graph.getNumDirEdges() == 3) def testDijkstrasAlgorithm(self): graph = DictGraph() graph.addEdge(0, 1, 1) graph.addEdge(1, 2, 1) graph.addEdge(1, 3, 1) graph.addEdge(2, 4, 1) graph.setVertex(4, 1) self.assertTrue((graph.dijkstrasAlgorithm(0) == numpy.array([0, 1, 2, 2, 3])).all()) self.assertTrue((graph.dijkstrasAlgorithm(1) == numpy.array([1, 0, 1, 1, 2])).all()) self.assertTrue((graph.dijkstrasAlgorithm(2) == numpy.array([2, 1, 0, 2, 1])).all()) self.assertTrue((graph.dijkstrasAlgorithm(3) == numpy.array([2, 1, 2, 0, 3])).all()) self.assertTrue((graph.dijkstrasAlgorithm(4) == numpy.array([3, 2, 1, 3, 0])).all()) #Test a graph which has an isolated node graph = DictGraph() graph.setVertex(5, 1) graph.addEdge(0, 1, 1) graph.addEdge(1, 2, 1) graph.addEdge(1, 3, 1) self.assertTrue((graph.dijkstrasAlgorithm(0) == numpy.array([0, 1, 2, 2, numpy.inf])).all()) #Test a graph in a ring graph = DictGraph() graph.addEdge(0, 1, 1) graph.addEdge(1, 2, 1) graph.addEdge(2, 3, 1) graph.addEdge(3, 4, 1) graph.addEdge(4, 0, 1) self.assertTrue((graph.dijkstrasAlgorithm(0) == numpy.array([0, 1, 2, 2, 1])).all()) #Try case in which vertex ids are not numbers graph = DictGraph() graph.addEdge("a", "b", 1) graph.addEdge("b", "c", 1) graph.addEdge("b", "d", 1) graph.addEdge("c", "e", 1) inds = Util.argsort(graph.getAllVertexIds()) self.assertTrue((graph.dijkstrasAlgorithm("a")[inds] == numpy.array([0, 1, 2, 2, 3])).all()) self.assertTrue((graph.dijkstrasAlgorithm("b")[inds] == numpy.array([1, 0, 1, 1, 2])).all()) self.assertTrue((graph.dijkstrasAlgorithm("c")[inds] == numpy.array([2, 1, 0, 2, 1])).all()) self.assertTrue((graph.dijkstrasAlgorithm("d")[inds] == numpy.array([2, 1, 2, 0, 3])).all()) self.assertTrue((graph.dijkstrasAlgorithm("e")[inds] == numpy.array([3, 2, 1, 3, 0])).all()) def testAdjacencyList(self): graph = DictGraph() graph.addEdge("a", "b", 1) graph.addEdge("b", "c", 1) graph.addEdge("b", "d", 1) graph.addEdge("c", "e", 1) graph.setVertex("f", 1) neighbourIndices, neighbourWeights = graph.adjacencyList() vertexIds = graph.getAllVertexIds() for i in range(len(neighbourIndices)): for k, j in enumerate(neighbourIndices[i]): self.assertTrue(graph.edgeExists(vertexIds[i], vertexIds[j])) self.assertEquals(graph[vertexIds[i], vertexIds[j]], neighbourWeights[i][k]) def testFindAllDistances(self): P = self.graph.findAllDistances() P2 = numpy.zeros((self.graph.size, self.graph.size)) P2[0, :] = numpy.array([0, 1, 2, 2, 1, numpy.inf]) P2[1, :] = numpy.array([1, 0, 3, 1, 2, numpy.inf]) P2[2, :] = numpy.array([2, 3, 0, 4, 3, numpy.inf]) P2[3, :] = numpy.array([2, 1, 4, 0, 1, numpy.inf]) P2[4, :] = numpy.array([1, 2, 3, 1, 0, numpy.inf]) P2[5, :] = numpy.array([numpy.inf, numpy.inf, numpy.inf, numpy.inf, numpy.inf, 0]) self.assertTrue((P == P2).all()) #Now test the directed graph P = self.graph2.findAllDistances() P2 = numpy.zeros((self.graph.size, self.graph.size)) P2[0, :] = numpy.array([0, 1, 2, 2, 1, numpy.inf]) P2[1, :] = numpy.array([numpy.inf, 0, numpy.inf, 1, 2, numpy.inf]) P2[2, :] = numpy.array([numpy.inf, numpy.inf, 0, 5, 6, numpy.inf]) P2[3, :] = numpy.array([numpy.inf, numpy.inf, numpy.inf, 0, 1, numpy.inf]) P2[4, :] = numpy.array([numpy.inf, numpy.inf, numpy.inf, numpy.inf, 0, numpy.inf]) P2[5, :] = numpy.array([numpy.inf, numpy.inf, numpy.inf, numpy.inf, numpy.inf, 0]) self.assertTrue((P == P2).all()) def testToIGraph(self): try: import igraph except ImportError as error: logging.debug(error) return graph = DictGraph() graph["a", "b"] = 1 graph["b", "c"] = 2 ig = graph.toIGraph() self.assertEquals(len(ig.vs), 3) self.assertEquals(ig[0, 2], 1) self.assertEquals(ig[1, 2], 1)