def samples(self):
"""
Get SampleGroup's associated Samples.
This will hit Mongo every time it is called! Responsibility for caching
the result lies on the calling method.
"""
return Sample.objects(uuid__in=self.sample_ids)
def add_sample(resp): # pylint: disable=unused-argument
"""Add sample."""
try:
post_data = request.get_json()
sample_group_uuid = post_data['sample_group_uuid']
sample_name = post_data['name']
except TypeError:
raise ParseError('Missing Sample creation payload.')
except KeyError:
raise ParseError('Invalid Sample creation payload.')
try:
sample_group = SampleGroup.query.filter_by(id=sample_group_uuid).one()
except NoResultFound:
raise InvalidRequest('Sample Group does not exist!')
sample = Sample.objects(name=sample_name).first()
if sample is not None:
raise InvalidRequest('A Sample with that name already exists.')
try:
analysis_result = AnalysisResultMeta().save()
sample = Sample(name=sample_name,
analysis_result=analysis_result,
metadata={
'name': sample_name
}).save()
sample_group.sample_ids.append(sample.uuid)
db.session.commit()
result = sample_schema.dump(sample).data
return result, 201
except ValidationError as validation_error:
current_app.logger.exception('Sample could not be created.')
raise InternalError(str(validation_error))
except IntegrityError as integrity_error:
current_app.logger.exception(
'Sample could not be added to Sample Group.')
db.session.rollback()
raise InternalError(str(integrity_error))
