def tomo_fly_scan(variableDict, global_PVs, detector_filename):
log_lib.info(' ')
log_lib.info(' *** start_scan')
def cleanup(signal, frame):
aps32id_lib.stop_scan(global_PVs, variableDict)
sys.exit(0)
signal.signal(signal.SIGINT, cleanup)
if variableDict.has_key('StopTheScan'):
aps32id_lib.stop_scan(global_PVs, variableDict)
return
aps32id_lib.disable_fast_shutter(global_PVs, variableDict)
# Start scan sleep in min so min * 60 = sec
time.sleep(float(variableDict['StartSleep_min']) * 60.0)
aps32id_lib.setPSO(global_PVs, variableDict)
aps32id_lib.setup_detector(global_PVs, variableDict)
aps32id_lib.setup_writer(global_PVs, variableDict, detector_filename)
aps32id_lib.acquire_pre_dark(variableDict, global_PVs)
aps32id_lib.acquire_pre_flat(variableDict, global_PVs)
log_lib.info(' ')
log_lib.info(' *** Setting for fly scan')
aps32id_lib.move_sample_in(global_PVs, variableDict)
aps32id_lib.open_shutters(global_PVs, variableDict)
aps32id_lib.disable_smaract(global_PVs, variableDict)
log_lib.info(' *** Setting for fly scan: Done!')
# run fly scan
theta = aps32id_lib.acquire_fly(global_PVs, variableDict)
###aps32id_lib.wait_pv(global_PVs['HDF1_NumCaptured'], expected_num_cap, 60)
aps32id_lib.enable_smaract(global_PVs, variableDict)
aps32id_lib.acquire_post_flat(variableDict, global_PVs)
aps32id_lib.acquire_post_dark(variableDict, global_PVs)
log_lib.info(' ')
log_lib.info(' *** Finalizing scan')
aps32id_lib.close_shutters(global_PVs, variableDict)
time.sleep(0.25)
aps32id_lib.wait_pv(global_PVs['HDF1_Capture_RBV'], 0, 600)
aps32id_lib.add_theta(global_PVs, variableDict, theta)
aps32id_lib.add_interferometer(global_PVs, variableDict, theta)
global_PVs['Fly_ScanControl'].put('Standard')
if False == aps32id_lib.wait_pv(global_PVs['HDF1_Capture'], 0, 10):
global_PVs['HDF1_Capture'].put(0)
aps32id_lib.reset_CCD(global_PVs, variableDict)
aps32id_lib.reset_angles_0_360(global_PVs)
log_lib.info(' *** Finalizing scan: Done!')
def cleanup(signal, frame):
aps32id_lib.stop_scan(global_PVs, variableDict)
sys.exit(0)
def tomo_step_scan(variableDict, global_PVs, detector_filename):
log_lib.info(' ')
log_lib.info(' *** start_scan')
def cleanup(signal, frame):
aps32id_lib.stop_scan(global_PVs, variableDict)
sys.exit(0)
signal.signal(signal.SIGINT, cleanup)
if variableDict.has_key('StopTheScan'):
aps32id_lib.stop_scan(global_PVs, variableDict)
return
# Start scan sleep in min so min * 60 = sec
time.sleep(float(variableDict['StartSleep_min']) * 60.0)
aps32id_lib.setup_detector(global_PVs, variableDict)
aps32id_lib.setup_writer(global_PVs, variableDict, detector_filename)
aps32id_lib.acquire_pre_dark(variableDict, global_PVs)
aps32id_lib.acquire_pre_flat(variableDict, global_PVs)
log_lib.info(' ')
log_lib.info(' *** Setting for step scan')
aps32id_lib.move_sample_in(global_PVs, variableDict)
aps32id_lib.open_shutters(global_PVs, variableDict)
aps32id_lib.disable_smaract(global_PVs, variableDict)
if variableDict['Use_Fast_Shutter']: # Fast shutter management:
uniblitz_status = global_PVs['Fast_Shutter_Uniblitz'].get(
) # should be returned from the fun enable_fast_shutter in future
aps32id_lib.enable_fast_shutter(global_PVs, variableDict)
log_lib.info(' *** Setting for step scan: Done!')
theta = []
step_size = ((float(variableDict['SampleEnd_Rot']) -
float(variableDict['SampleStart_Rot'])) /
(float(variableDict['Projections']) - 1.0))
if variableDict.has_key('Interlaced') and int(
variableDict['Interlaced']) > 0:
# theta = gen_interlaced_theta()
# theta = aps32id_lib.gen_interlaced_bidirectional(variableDict) # Tekin algo
theta = aps32id_lib.gen_interlaced_theta_W(
variableDict) # Wolfgang algo
else:
theta = np.arange(float(variableDict['SampleStart_Rot']),
float(variableDict['Projections']) * step_size,
step_size)
global_PVs['Cam1_FrameType'].put(aps32id_lib.FrameTypeData, wait=True)
global_PVs['Cam1_NumImages'].put(1, wait=True)
if variableDict['Recursive_Filter_Enabled'] == 1:
global_PVs['Proc1_Filter_Enable'].put('Enable')
for sample_rot in theta:
log_lib.info(' ')
log_lib.info('-->Sample Rot: %.3f' % sample_rot)
global_PVs['Motor_SampleRot'].put(sample_rot, wait=True)
log_lib.info('Stabilize Sleep (ms)' +
str(variableDict['StabilizeSleep_ms']))
time.sleep(float(variableDict['StabilizeSleep_ms']) / 1000.0)
# start detector acquire
if variableDict['Recursive_Filter_Enabled'] == 1:
aps32id_lib.acquire_proj_recursive_filt(global_PVs, variableDict)
elif variableDict['ProjectionsPerRot'] > 1:
aps32id_lib.acq_mutliple_proj_per_rot(global_PVs, variableDict)
else:
aps32id_lib.acquire_proj(global_PVs, variableDict)
if variableDict['Recursive_Filter_Enabled'] == 1:
global_PVs['Proc1_Filter_Enable'].put('Disable', wait=True)
if variableDict['ProjectionsPerRot'] > 1:
theta = aps32id_lib.update_theta_for_more_proj(theta, variableDict)
aps32id_lib.enable_smaract(global_PVs, variableDict)
if variableDict['Use_Fast_Shutter']: # Fast shutter management
global_PVs['Fast_Shutter_Uniblitz'].put(uniblitz_status)
aps32id_lib.disable_fast_shutter(global_PVs, variableDict)
aps32id_lib.acquire_post_flat(variableDict, global_PVs)
aps32id_lib.acquire_post_dark(variableDict, global_PVs)
log_lib.info(' ')
log_lib.info(' *** Finalizing scan')
aps32id_lib.close_shutters(global_PVs, variableDict)
time.sleep(0.25)
aps32id_lib.wait_pv(global_PVs['HDF1_Capture_RBV'], 0, 600)
aps32id_lib.add_theta(global_PVs, variableDict, theta)
aps32id_lib.reset_CCD(global_PVs, variableDict)
aps32id_lib.reset_angles_0_360(global_PVs)
log_lib.info(' *** Finalizing scan: Done!')
def tiff_2Dscan(variableDict, global_PVs, detector_filename):
log_lib.info(' ')
log_lib.info(' *** start_scan')
def cleanup(signal, frame):
aps32id_lib.stop_scan(global_PVs, variableDict)
sys.exit(0)
signal.signal(signal.SIGINT, cleanup)
if variableDict.has_key('StopTheScan'):
aps32id_lib.stop_scan(global_PVs, variableDict)
return
# Start scan sleep in min so min * 60 = sec
time.sleep(float(variableDict['StartSleep_min']) * 60.0)
aps32id_lib.setup_detector(global_PVs, variableDict)
aps32id_lib.setup_tiff_writer(global_PVs, variableDict, detector_filename)
aps32id_lib.acquire_pre_dark(variableDict, global_PVs)
aps32id_lib.acquire_pre_flat(variableDict, global_PVs)
log_lib.info(' ')
log_lib.info(' *** Setting for 2D tiff scan')
aps32id_lib.move_sample_in(global_PVs, variableDict)
aps32id_lib.open_shutters(global_PVs, variableDict)
aps32id_lib.disable_smaract(global_PVs, variableDict)
if variableDict['Use_Fast_Shutter']: # Fast shutter management:
uniblitz_status = global_PVs['Fast_Shutter_Uniblitz'].get(
) # should be returned from the fun enable_fast_shutter in future
aps32id_lib.enable_fast_shutter(global_PVs, variableDict)
log_lib.info(' *** Setting for tiff scan: Done!')
global_PVs['Cam1_NumImages'].put(1, wait=True)
# start detector acquire
if variableDict['Recursive_Filter_Enabled'] == 1:
global_PVs['Proc1_Filter_Enable'].put('Enable')
log_lib.info('--> Acquing %i Im with %0.3f sec between exposures' %
(int(variableDict['Projections']),
float(variableDict['Delay_next_exposure_s'])))
for i in range(int(variableDict['Projections'])):
# start detector acquire
if variableDict['Recursive_Filter_Enabled'] == 1:
aps32id_lib.acquire_proj_recursive_filt(global_PVs, variableDict)
else:
aps32id_lib.acquire_proj(global_PVs, variableDict)
time.sleep(float(variableDict['Delay_next_exposure_s'])
) # Pause between 2 acquisition with shutter closed
if variableDict['Recursive_Filter_Enabled'] == 1:
global_PVs['Proc1_Filter_Enable'].put('Disable', wait=True)
aps32id_lib.enable_smaract(global_PVs, variableDict)
if variableDict['Use_Fast_Shutter']: # Fast shutter management
global_PVs['Fast_Shutter_Uniblitz'].put(uniblitz_status)
aps32id_lib.disable_fast_shutter(global_PVs, variableDict)
aps32id_lib.acquire_post_flat(variableDict, global_PVs)
aps32id_lib.acquire_post_dark(variableDict, global_PVs)
log_lib.info(' ')
log_lib.info(' *** Finalizing scan')
aps32id_lib.close_shutters(global_PVs, variableDict)
time.sleep(0.25)
aps32id_lib.reset_CCD(global_PVs, variableDict)
log_lib.info(' *** Finalizing scan: Done!')