def main():
beacon = EddystoneUid(**parse())
beacon.run()
import numpy as np
import utils
import environment
import model
import control
import argument_parser as arg
import matplotlib.pyplot as plt
if __name__ == '__main__':
hparam = arg.parse()
rl_mode = True
nb_total_step = hparam['nb_episode'] * hparam['nb_step']
likelihood_a2b = np.zeros((hparam['nb_run'], hparam['nb_episode']))
likelihood_b2a = np.zeros((hparam['nb_run'], hparam['nb_episode']))
reward_a2b = np.zeros((hparam['nb_run'], hparam['nb_episode']))
reward_b2a = np.zeros((hparam['nb_run'], hparam['nb_episode']))
nb_total_step = hparam['nb_episode_adapt'] * hparam['nb_step']
likelihood_a2b_adapt = np.zeros(
(hparam['nb_run'], hparam['nb_episode_adapt']))
likelihood_b2a_adapt = np.zeros(
(hparam['nb_run'], hparam['nb_episode_adapt']))
reward_a2b_adapt = np.zeros((hparam['nb_run'], hparam['nb_episode_adapt']))
reward_b2a_adapt = np.zeros((hparam['nb_run'], hparam['nb_episode_adapt']))
for run in range(hparam['nb_run']):
print(f'run #{run}')
env = environment.CausalEnvironment(hparam['state_dim'],
hparam['action_dim'],
hparam['nb_step'], hparam['peak'])
def main():
beacon = IBeacon(**parse())
beacon.run()
reference=fasta_ref_file,
ploidy=args.HaplotypeCaller_ploidy,
confidence=args.HaplotypeCaller_confidence,
exe=args.VariantCalling)
vcfs = qtl.gatk_merge_vcfs(exe=args.CombineGVCFs,
reference=fasta_ref_file,
sample=args.experimentName)
filtered_variants = qtl.gatk_variant_selection(
sample=args.experimentName,
in1=vcfs,
reference=fasta_ref_file,
out=f'output/GATK/nonfiltered/{args.experimentName}.snps.vcf',
parameters='SNP',
exe=args.FilteringOutSNPs)
variant_table = qtl.gatk_variants_to_table(sample=args.experimentName,
in1=filtered_variants,
exe=args.VariantsToTable)
qtl.done()
if __name__ == '__main__':
parsed = parse()
parsed = parse_base_recalibration(parser=parsed)
arguments = parsed.parse_args()
main(args=arguments)
import os
from argument_parser import parse
from azure.authorization import AuthorizationDto
from azure.azure_http_client import AzureHttpClient
from configuration import Configuration
from configuration_reader import JsonConfigReader, JsonConfigValidator
from enums.terraform_mode import TerraformMode
from inventory.inventory_creator import InventoryCreator
from inventory.inventory_writer import InventoryWriter
from process_manager import ProcessManager
from template_processor import TemplateProcessor
cwd = os.getcwd()
args = parse()
config = JsonConfigReader([JsonConfigValidator()]).read(file_name=args.config)
terraform_directory = args.terraform_directory
ansible_directory = args.ansible_directory
mode = TerraformMode.APPLY.value if args.mode == 'apply' else TerraformMode.DESTROY.value
output_parameters_path = os.path.join(terraform_directory, 'parameters.tfvars')
template_processor = TemplateProcessor('utils/parameters.j2',
output_parameters_path)
template_processor.process(config)
status_code = ProcessManager('terraform').with_cwd(args.terraform_directory)\
.with_args(mode, '-var-file="parameters.tfvars"', '-auto-approve')\
.start(lambda data: print(data)).wait()
print(f'Terraform status code {status_code}')
if status_code == 0 and mode == TerraformMode.APPLY.value:
configuration = Configuration(config)
def main():
beacon = Kontakt(**parse())
beacon.run()