Python nextseq_trim_index示例

示例#1

文件： test_qualtrim.py 项目： llllaaaa/atropos

def test_nextseq_trim():
    s = Sequence('n', '', '')
    assert nextseq_trim_index(s, cutoff=22) == 0
    s = Sequence(
        'n',
        'TCTCGTATGCCGTCTTATGCTTGAAAAAAAAAAGGGGGGGGGGGGGGGGGNNNNNNNNNNNGGNGG',
        'AA//EAEE//A6///E//A//EA/EEEEEEAEA//EEEEEEEEEEEEEEE###########EE#EA')
    assert nextseq_trim_index(s, cutoff=22) == 33

示例#2

def test_nextseq_trim():
	s = Sequence('n', '', '')
	assert nextseq_trim_index(s, cutoff=22) == 0
	s = Sequence('n',
		'TCTCGTATGCCGTCTTATGCTTGAAAAAAAAAAGGGGGGGGGGGGGGGGGNNNNNNNNNNNGGNGG',
		'AA//EAEE//A6///E//A//EA/EEEEEEAEA//EEEEEEEEEEEEEEE###########EE#EA'
	)
	assert nextseq_trim_index(s, cutoff=22) == 33

示例#3

文件： modifiers.py 项目： llllaaaa/atropos

 def __call__(self, read):
     if len(read) == 0:
         return read
     stop = nextseq_trim_index(read, self.cutoff, self.base)
     return self.subseq(read, end=stop)

示例#4

 def __call__(self, read):
     if len(read) == 0:
         return read
     stop = nextseq_trim_index(read, self.cutoff, self.base)
     return self.subseq(read, end=stop)