def do_automata(N,K,nk_automata=None,ordinal_number=-1):
draw_graph_object = DrawGraph()
current_folder_path = os.path.dirname(__file__)
if nk_automata == None:
nk_automata = NK_Automata(N, K)
nk_automata.generate_random_automata()
nk_automata.ordinal_number = ordinal_number
print nk_automata
nk_automata.span_automata()
print "satespan",nk_automata.state_span
nk_automata.analyse_automata()
print nk_automata.state_list
nk_automata.make_attractor_stat_dictionary()
print nk_automata.attractor_dict
nk_automata.count_stability()
print "Stability:", nk_automata.stability
nk_automata.count_expected_return_time()
print "ExpectedReturnTime:", nk_automata.expected_return_time
draw_graph_object.draw_gene_connecions_graph(nk_automata.links_list, current_folder_path)
draw_graph_object.draw_states_graph(nk_automata.state_span, current_folder_path)
draw_graph_object.draw_simplfied_states_graph(nk_automata.attractor_dict,2**nk_automata.N,current_folder_path)
def do_automata(N, K, draw_graph_object, nk_automata=None, ordinal_number=-1):
current_folder_path = os.path.dirname(__file__)
if nk_automata == None:
nk_automata = NK_Automata(N, K)
nk_automata.generate_random_automata()
nk_automata.ordinal_number = ordinal_number
draw_graph_object.draw_gene_connecions_graph(nk_automata.links_list,
current_folder_path)
#print nk_automata
nk_automata.span_automata()
# print "satespan",nk_automata.state_span
nk_automata.analyse_automata()
# print nk_automata.state_list
nk_automata.make_attractor_stat_dictionary()
# print nk_automata.attractor_dict
# print "state_list", nk_automata.state_list
nk_automata.count_stability()
nk_automata.count_expected_return_time()
draw_graph_object.draw_simplfied_states_graph(
nk_automata.make_attractors_dictionary(), 2**nk_automata.N,
current_folder_path)
draw_graph_object.draw_states_graph(nk_automata.state_span,
current_folder_path)
SaveLoad.save_n_k_automata(current_folder_path, nk_automata, True)
def doAutomata(N,K,drawGraphObject,nkAutomata=None,ordinalNumber=-1):
currentFolderPath = os.path.dirname(__file__)
if nkAutomata == None:
nkAutomata = NK_Automata(N, K)
nkAutomata.generateRandomAutomata()
nkAutomata.ordinalNumber = ordinalNumber
drawGraphObject.drawGeneConnecionsGraph(nkAutomata.linksList, currentFolderPath)
#print nkAutomata
nkAutomata.spanAutomata()
# print "satespan",nkAutomata.stateSpan
nkAutomata.analyseAutomata()
# print nkAutomata.stateList
nkAutomata.makeAttractorStatDictionary()
# print nkAutomata.attractorDict
# print "stateList", nkAutomata.stateList
nkAutomata.countStability()
nkAutomata.countExpectedReturnTime()
drawGraphObject.drawSimplfiedStatesGraph(nkAutomata.makeAttractorsDictionary(),2**nkAutomata.N,currentFolderPath)
drawGraphObject.drawStatesGraph(nkAutomata.stateSpan, currentFolderPath)
SaveLoad.saveNKAutomata(currentFolderPath, nkAutomata, True)
def doAutomata(N,K,nkAutomata=None,ordinalNumber=-1):
drawGraphObject = DrawGraph()
currentFolderPath = os.path.dirname(__file__)
if nkAutomata == None:
nkAutomata = NK_Automata(N, K)
nkAutomata.generateRandomAutomata()
nkAutomata.ordinalNumber = ordinalNumber
print nkAutomata
nkAutomata.spanAutomata()
print "satespan",nkAutomata.stateSpan
nkAutomata.analyseAutomata()
print nkAutomata.stateList
nkAutomata.makeAttractorStatDictionary()
print nkAutomata.attractorDict
nkAutomata.countStability()
print "Stability:", nkAutomata.stability
nkAutomata.countExpectedReturnTime()
print "ExpectedReturnTime:", nkAutomata.expectedReturnTime
drawGraphObject.drawGeneConnecionsGraph(nkAutomata.linksList, currentFolderPath)
drawGraphObject.drawStatesGraph(nkAutomata.stateSpan, currentFolderPath)
drawGraphObject.drawSimplfiedStatesGraph(nkAutomata.attractorDict,2**nkAutomata.N,currentFolderPath)
def do_automata(N, K, nk_automata=None, ordinal_number=-1):
draw_graph_object = DrawGraph()
current_folder_path = os.path.dirname(__file__)
if nk_automata == None:
nk_automata = NK_Automata(N, K)
nk_automata.generate_random_automata()
nk_automata.ordinal_number = ordinal_number
print nk_automata
nk_automata.span_automata()
print "satespan", nk_automata.state_span
nk_automata.analyse_automata()
print nk_automata.state_list
nk_automata.make_attractor_stat_dictionary()
print nk_automata.attractor_dict
nk_automata.count_stability()
print "Stability:", nk_automata.stability
nk_automata.count_expected_return_time()
print "ExpectedReturnTime:", nk_automata.expected_return_time
draw_graph_object.draw_gene_connecions_graph(nk_automata.links_list,
current_folder_path)
draw_graph_object.draw_states_graph(nk_automata.state_span,
current_folder_path)
draw_graph_object.draw_simplfied_states_graph(nk_automata.attractor_dict,
2**nk_automata.N,
current_folder_path)
def doAutomata(N, K, drawGraphObject, nkAutomata=None, ordinalNumber=-1):
currentFolderPath = os.path.dirname(__file__)
if nkAutomata == None:
nkAutomata = NK_Automata(N, K)
nkAutomata.generateRandomAutomata()
nkAutomata.ordinalNumber = ordinalNumber
drawGraphObject.drawGeneConnecionsGraph(nkAutomata.linksList,
currentFolderPath)
#print nkAutomata
nkAutomata.spanAutomata()
# print "satespan",nkAutomata.stateSpan
nkAutomata.analyseAutomata()
# print nkAutomata.stateList
nkAutomata.makeAttractorStatDictionary()
# print nkAutomata.attractorDict
# print "stateList", nkAutomata.stateList
nkAutomata.countStability()
nkAutomata.countExpectedReturnTime()
drawGraphObject.drawSimplfiedStatesGraph(
nkAutomata.makeAttractorsDictionary(), 2**nkAutomata.N,
currentFolderPath)
drawGraphObject.drawStatesGraph(nkAutomata.stateSpan, currentFolderPath)
SaveLoad.saveNKAutomata(currentFolderPath, nkAutomata, True)
def do_automata(N,K,draw_graph_object,nk_automata=None,ordinal_number=-1):
current_folder_path = os.path.dirname(__file__)
if nk_automata == None:
nk_automata = NK_Automata(N, K)
nk_automata.generate_random_automata()
nk_automata.ordinal_number = ordinal_number
draw_graph_object.draw_gene_connecions_graph(nk_automata.links_list, current_folder_path)
#print nk_automata
nk_automata.span_automata()
# print "satespan",nk_automata.state_span
nk_automata.analyse_automata()
# print nk_automata.state_list
nk_automata.make_attractor_stat_dictionary()
# print nk_automata.attractor_dict
# print "state_list", nk_automata.state_list
nk_automata.count_stability()
nk_automata.count_expected_return_time()
draw_graph_object.draw_simplfied_states_graph(nk_automata.make_attractors_dictionary(),2**nk_automata.N,current_folder_path)
draw_graph_object.draw_states_graph(nk_automata.state_span, current_folder_path)
SaveLoad.save_n_k_automata(current_folder_path, nk_automata, True)
