def test_envs(): # pseudo-tests for coverage for different env flags
reset_seeds(reset_graph_with_backend=K)
units = 6
batch_shape = (8, 100, 2 * units)
x, y, sw = make_data(batch_shape, units)
from importlib import reload
from see_rnn import inspect_gen, inspect_rnn, utils, _backend
for flag in ['1', '0']:
os.environ["TF_KERAS"] = flag
TF_KERAS = os.environ["TF_KERAS"] == '1'
reload(_backend)
reload(utils)
reload(inspect_gen)
reload(inspect_rnn)
from see_rnn.inspect_gen import get_gradients as glg
from see_rnn.inspect_rnn import rnn_summary as rs
from see_rnn.utils import _validate_rnn_type as _vrt
reset_seeds(reset_graph_with_backend=K)
if TF_KERAS:
from tensorflow.keras.layers import Input, Bidirectional
from tensorflow.keras.layers import GRU as _GRU
from tensorflow.keras.models import Model
import tensorflow.keras.backend as _K
else:
from keras.layers import Input, Bidirectional
from keras.layers import GRU as _GRU
from keras.models import Model
import keras.backend as _K
reset_seeds(reset_graph_with_backend=_K)
new_imports = dict(Input=Input,
Bidirectional=Bidirectional,
Model=Model)
model = make_model(_GRU,
batch_shape,
new_imports=new_imports,
IMPORTS=IMPORTS)
pass_on_error(model, x, y, 1) # possibly _backend-induced err
pass_on_error(glg, model, 1, x, y)
rs(model.layers[1])
from see_rnn.inspect_rnn import get_rnn_weights as grw
grw(model, 1, concat_gates=False, as_tensors=True)
grw(model, 1, concat_gates=False, as_tensors=False)
_test_outputs(model)
setattr(model.layers[2].cell, 'get_weights', None)
get_rnn_weights(model, 2, concat_gates=True, as_tensors=False)
_model = _make_nonrnn_model()
pass_on_error(_vrt, _model.layers[1])
del model, _model
assert True
cprint("\n<< ENV TESTS PASSED >>\n", 'green')
def test_errors(): # test Exception cases
units = 6
batch_shape = (8, 100, 2 * units)
reset_seeds(reset_graph_with_backend=K)
model = make_model(GRU,
batch_shape,
activation='relu',
recurrent_dropout=0.3,
IMPORTS=IMPORTS)
x, y, sw = make_data(batch_shape, units)
model.train_on_batch(x, y, sw)
grads = get_gradients(model, 1, x, y)
grads_4D = np.expand_dims(grads, -1)
from see_rnn.inspect_gen import get_layer, _make_grads_fn
pass_on_error(features_0D, grads)
pass_on_error(features_0D, grads_4D)
pass_on_error(features_1D, grads_4D)
pass_on_error(features_2D, grads_4D)
pass_on_error(features_2D, grads)
pass_on_error(get_gradients, model, 1, x, y, mode='cactus')
pass_on_error(get_gradients, model, 1, x, y, layer=model.layers[1])
pass_on_error(_make_grads_fn, model, model.layers[1], mode='banana')
pass_on_error(features_hist, grads[:, :4, :3], po='tato')
pass_on_error(features_hist_v2, grads[:, :4, :3], po='tato')
pass_on_error(get_layer, model)
pass_on_error(get_layer, model, 'capsule')
pass_on_error(rnn_heatmap, model, 1, input_data=x, labels=y, mode='coffee')
pass_on_error(rnn_heatmap, model, 1, co='vid')
pass_on_error(rnn_heatmap, model, 1, norm=(0, 1, 2))
pass_on_error(rnn_heatmap, model, 1, mode='grads')
pass_on_error(rnn_histogram, model, 1, norm=None)
pass_on_error(rnn_heatmap, model, layer_index=9001)
pass_on_error(features_0D, grads, cake='lie')
pass_on_error(features_1D, grads, pup='not just any')
pass_on_error(features_2D, grads, true=False)
outs = list(get_outputs(model, 1, x, as_dict=True).values())
pass_on_error(rnn_histogram, model, 1, data=outs)
pass_on_error(rnn_histogram, model, 1, data=[1])
pass_on_error(rnn_histogram, model, 1, data=[[1]])
pass_on_error(features_hist, grads, co='vid')
pass_on_error(features_0D, grads, configs={'x': {}})
pass_on_error(features_1D, grads, configs={'x': {}})
pass_on_error(features_2D, grads, configs={'x': {}})
pass_on_error(features_hist, grads, configs={'x': {}})
pass_on_error(features_hist_v2, grads, configs={'x': {}})
cprint("\n<< EXCEPTION TESTS PASSED >>\n", 'green')
assert True
def test_inspect_gen():
units = 6
batch_shape = (8, 100, 2 * units)
model = make_model(GRU,
batch_shape,
activation='relu',
bidirectional=True,
recurrent_dropout=0.3,
include_dense=True,
IMPORTS=IMPORTS)
assert bool(get_weight_penalties(model))
assert weight_loss(model) > 0
cprint("\n<< INSPECT_GEN TEST PASSED >>\n", 'green')
def test_main():
units = 6
batch_shape = (8, 100, 2 * units)
iterations = 20
kwargs1 = dict(batch_shape=batch_shape,
units=units,
bidirectional=False,
IMPORTS=IMPORTS)
kwargs2 = dict(batch_shape=batch_shape,
units=units,
bidirectional=True,
IMPORTS=IMPORTS)
if TF_2 and not TF_KERAS:
rnn_layers = GRU, SimpleRNN
else:
rnn_layers = LSTM, GRU, SimpleRNN
if USING_GPU:
rnn_layers += CuDNNLSTM, CuDNNGRU
model_names = [layer.__name__ for layer in rnn_layers]
model_names = [(prefix + name) for prefix in ("uni-", "bi-")
for name in model_names]
configs = [
dict(rnn_layer=rnn_layer, **kwargs) for kwargs in (kwargs1, kwargs2)
for rnn_layer in rnn_layers
]
tests_ran = 0
for config, model_name in zip(configs, model_names):
reset_seeds(reset_graph_with_backend=K)
model = make_model(**config)
train_model(model, iterations)
rnn_summary(model.layers[1])
_test_outputs(model)
_test_outputs_gradients(model)
_test_weights_gradients(model)
_test_weights(model)
tests_ran += 1
cprint("\n<< %s TESTED >>\n" % model_name, 'green')
assert tests_ran == len(configs)
cprint("\n<< ALL MODELS TESTED >>\n", 'green')
def test_misc(): # test miscellaneous functionalities
units = 6
batch_shape = (8, 100, 2 * units)
reset_seeds(reset_graph_with_backend=K)
model = make_model(GRU,
batch_shape,
activation='relu',
recurrent_dropout=0.3,
IMPORTS=IMPORTS)
x, y, sw = make_data(batch_shape, units)
model.train_on_batch(x, y, sw)
weights_norm(model, 'gru', omit_names='bias', verbose=1)
weights_norm(model, ['gru', 1, (1, 1)], norm_fn=np.abs)
stats = weights_norm(model, 'gru')
weights_norm(model, 'gru', _dict=stats)
grads = get_gradients(model, 1, x, y)
get_gradients(model, 1, x, y, as_dict=True)
get_gradients(model, ['gru', 1], x, y)
get_outputs(model, ['gru', 1], x)
features_1D(grads,
subplot_samples=True,
tight=True,
borderwidth=2,
share_xy=False)
with tempdir() as dirpath:
features_0D(grads[0], savepath=os.path.join(dirpath, 'img.png'))
with tempdir() as dirpath:
features_1D(grads[0],
subplot_samples=True,
annotations=[1, 'pi'],
savepath=os.path.join(dirpath, 'img.png'))
features_2D(grads.T, n_rows=1.5, tight=True, borderwidth=2)
with tempdir() as dirpath:
features_2D(grads.T[:, :, 0],
norm='auto',
savepath=os.path.join(dirpath, 'img.png'))
with tempdir() as dirpath:
features_hist(grads,
show_borders=False,
borderwidth=1,
annotations=[0],
show_xy_ticks=[0, 0],
share_xy=(1, 1),
title="grads",
savepath=os.path.join(dirpath, 'img.png'))
with tempdir() as dirpath:
features_hist_v2(list(grads[:, :4, :3]),
colnames=list('abcd'),
show_borders=False,
xlims=(-.01, .01),
ylim=100,
borderwidth=1,
show_xy_ticks=[0, 0],
side_annot='row',
share_xy=True,
title="Grads",
savepath=os.path.join(dirpath, 'img.png'))
features_hist(grads, center_zero=True, xlims=(-1, 1), share_xy=0)
features_hist_v2(list(grads[:, :4, :3]),
center_zero=True,
xlims=(-1, 1),
share_xy=(False, False))
with tempdir() as dirpath:
rnn_histogram(model,
1,
show_xy_ticks=[0, 0],
equate_axes=2,
savepath=os.path.join(dirpath, 'img.png'))
rnn_histogram(model,
1,
equate_axes=False,
configs={
'tight': dict(left=0, right=1),
'plot': dict(color='red'),
'title': dict(fontsize=14),
})
rnn_heatmap(model, 1, cmap=None, normalize=True, show_borders=False)
rnn_heatmap(model, 1, cmap=None, norm='auto', absolute_value=True)
rnn_heatmap(model, 1, norm=None)
with tempdir() as dirpath:
rnn_heatmap(model,
1,
norm=(-.004, .004),
savepath=os.path.join(dirpath, 'img.png'))
hist_clipped(grads, peaks_to_clip=2)
_, ax = plt.subplots(1, 1)
hist_clipped(grads, peaks_to_clip=2, ax=ax, annot_kw=dict(fontsize=15))
get_full_name(model, 'gru')
get_full_name(model, 1)
pass_on_error(get_full_name, model, 'croc')
get_weights(model, 'gru', as_dict=False)
get_weights(model, 'gru', as_dict=True)
get_weights(model, 'gru/bias')
get_weights(model, ['gru', 1, (1, 1)])
pass_on_error(get_weights, model, 'gru/goo')
get_weights(model, '*')
get_gradients(model, '*', x, y)
get_outputs(model, '*', x)
from see_rnn.utils import _filter_duplicates_by_keys
keys, data = _filter_duplicates_by_keys(list('abbc'), [1, 2, 3, 4])
assert keys == ['a', 'b', 'c']
assert data == [1, 2, 4]
keys, data = _filter_duplicates_by_keys(list('abbc'), [1, 2, 3, 4],
[5, 6, 7, 8])
assert keys == ['a', 'b', 'c']
assert data[0] == [1, 2, 4] and data[1] == [5, 6, 8]
from see_rnn.inspect_gen import get_layer, detect_nans
get_layer(model, 'gru')
get_rnn_weights(model, 1, concat_gates=False, as_tensors=True)
rnn_heatmap(model, 1, input_data=x, labels=y, mode='weights')
_test_prefetched_data(model)
# test NaN/Inf detection
nan_txt = detect_nans(np.array([1] * 9999 + [np.nan])).replace('\n', ' ')
print(nan_txt) # case: print as quantity
data = np.array([np.nan, np.inf, -np.inf, 0])
print(detect_nans(data, include_inf=True))
print(detect_nans(data, include_inf=False))
data = np.array([np.inf, 0])
print(detect_nans(data, include_inf=True))
detect_nans(np.array([0]))
K.set_value(model.optimizer.lr, 1e12)
train_model(model, iterations=10)
rnn_histogram(model, 1)
rnn_heatmap(model, 1)
del model
reset_seeds(reset_graph_with_backend=K)
# test SimpleRNN & other
_model = make_model(SimpleRNN,
batch_shape,
units=128,
use_bias=False,
IMPORTS=IMPORTS)
train_model(_model, iterations=1) # TF2-Keras-Graph bug workaround
rnn_histogram(_model, 1) # test _pretty_hist
K.set_value(_model.optimizer.lr, 1e50) # force NaNs
train_model(_model, iterations=20)
rnn_heatmap(_model, 1)
data = get_rnn_weights(_model, 1)
rnn_heatmap(_model, 1, input_data=x, labels=y, data=data)
os.environ["TF_KERAS"] = '0'
get_rnn_weights(_model, 1, concat_gates=False)
del _model
assert True
cprint("\n<< MISC TESTS PASSED >>\n", 'green')
def test_track_weight_decays():
"""This example should be able to run without error"""
def make_model(batch_shape, layer_kw={}):
"""Conv1D autoencoder"""
dim = batch_shape[-1]
bdim = dim // 2
ipt = Input(batch_shape=batch_shape)
x = Conv1D(dim, 8, activation='relu', **layer_kw)(ipt)
x = Conv1D(bdim, 1, activation='relu', **layer_kw)(x) # bottleneck
out = Conv1D(dim, 8, activation='linear', **layer_kw)(x)
model = Model(ipt, out)
model.compile('adam', 'mse')
return model
def make_data(batch_shape, n_batches):
X = Y = np.random.randn(n_batches, *batch_shape)
return X, Y
########### Train setup ###################################################
batch_shape = (32, 15, 12)
n_epochs = 4
n_batches = 10
wd = 2e-3
layer_kw = dict(padding='same', kernel_regularizer=l2(wd))
model = make_model(batch_shape, layer_kw)
X, Y = make_data(batch_shape, n_batches)
## Train ####################
l2_stats = {}
for epoch in range(n_epochs):
l2_stats[epoch] = {}
for i, (x, y) in enumerate(zip(X, Y)):
model.train_on_batch(x, y)
l2_stats[epoch] = weights_norm(model, [1, 3],
l2_stats[epoch],
omit_names='bias',
verbose=1)
print("Epoch", epoch + 1, "finished")
print()
########### Preprocess funcs ##################################################
def _get_weight_names(model, layer_names, omit_names):
weight_names = []
for name in layer_names:
layer = model.get_layer(name=name)
for w in layer.weights:
if not any(to_omit in w.name for to_omit in omit_names):
weight_names.append(w.name)
return weight_names
def _merge_layers_and_weights(l2_stats):
stats_merged = []
for stats in l2_stats.values():
x = np.array(list(
stats.values())) # (layers, weights, stats, batches)
x = x.reshape(-1, *x.shape[2:]) # (layers-weights, stats, batches)
stats_merged.append(x)
return stats_merged # (epochs, layer-weights, stats, batches)
########### Plot setup ########################################################
ylim = 5
xlims = (.4, 1.2)
omit_names = 'bias'
suptitle = "wd={:.0e}".format(wd).replace('0', '')
side_annot = "EP"
configs = {'side_annot': dict(xy=(.9, .9))}
layer_names = list(l2_stats[0].keys())
weight_names = _get_weight_names(model, layer_names, omit_names)
stats_merged = _merge_layers_and_weights(l2_stats)
## Plot ########
features_hist_v2(stats_merged,
colnames=weight_names,
title=suptitle,
xlims=xlims,
ylim=ylim,
side_annot=side_annot,
pad_xticks=True,
configs=configs)
