Intended Audience :: Science/Research
Intended Audience :: Developers
License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+)
Programming Language :: C
Programming Language :: Python
Programming Language :: Python :: 3
Topic :: Scientific/Engineering :: Bio-Informatics
Topic :: Scientific/Engineering :: Chemistry
Operating System :: Microsoft :: Windows
Operating System :: POSIX
Operating System :: Unix
Operating System :: MacOS
"""
# Global info about compiler
compiler = CompilerDetection(disable_openmp)
compiler.initialize()
extra_cpp_libraries = []
if sys.platform == 'win32':
extra_cpp_libraries.append('Ws2_32')
# For determining if a path is relative (for dtr)
extra_cpp_libraries.append('Shlwapi')
################################################################################
# Declaration of the compiled extension modules (cython + c)
################################################################################
def format_extensions():
Intended Audience :: Science/Research
Intended Audience :: Developers
License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+)
Programming Language :: C
Programming Language :: Python
Programming Language :: Python :: 3
Topic :: Scientific/Engineering :: Bio-Informatics
Topic :: Scientific/Engineering :: Chemistry
Operating System :: Microsoft :: Windows
Operating System :: POSIX
Operating System :: Unix
Operating System :: MacOS
"""
# Global info about compiler
compiler = CompilerDetection(disable_openmp)
extra_cpp_libraries = []
if sys.platform == 'darwin':
extra_cpp_libraries.append('stdc++')
if sys.platform == 'win32':
extra_cpp_libraries.append('Ws2_32')
# For determining if a path is relative (for dtr)
extra_cpp_libraries.append('Shlwapi')
################################################################################
# Declaration of the compiled extension modules (cython + c)
################################################################################
xtc = Extension('mdtraj.formats.xtc',
sources=[
Intended Audience :: Science/Research
Intended Audience :: Developers
License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+)
Programming Language :: C
Programming Language :: Python
Programming Language :: Python :: 3
Topic :: Scientific/Engineering :: Bio-Informatics
Topic :: Scientific/Engineering :: Chemistry
Operating System :: Microsoft :: Windows
Operating System :: POSIX
Operating System :: Unix
Operating System :: MacOS
"""
# Global info about compiler
compiler = CompilerDetection(disable_openmp)
compiler.initialize()
extra_cpp_libraries = []
if sys.platform == 'win32':
extra_cpp_libraries.append('Ws2_32')
# For determining if a path is relative (for dtr)
extra_cpp_libraries.append('Shlwapi')
################################################################################
# Declaration of the compiled extension modules (cython + c)
################################################################################
def format_extensions():
('numpy', ),
('scipy', ),
('pandas', ),
('six', ),
('mdtraj', ),
('sklearn', 'scikit-learn'),
('numpydoc', ),
('tables', 'pytables'),
))
# Where to find extensions
MSMDIR = 'msmbuilder/msm/'
HMMDIR = 'msmbuilder/hmm/'
CLUSTERDIR = 'msmbuilder/cluster/'
compiler = CompilerDetection(DISABLE_OPENMP)
with open('msmbuilder/src/config.pxi', 'w') as f:
f.write('''
DEF DEBUG = {debug}
DEF OPENMP = {openmp}
'''.format(openmp=compiler.openmp_enabled, debug=DEBUG))
extensions = []
extensions.append(
Extension('msmbuilder.example_datasets._muller',
sources=[pjoin('msmbuilder', 'example_datasets', '_muller.pyx')],
include_dirs=[np.get_include()]))
extensions.append(
Extension('msmbuilder.msm._markovstatemodel',
sources=[
# ))
## NOTE: now the kind of good stuff. This is for building all their
## fancy code they use. For now we will rip out anything that is
## annoying to build and we don't need it.
## DEBUG
# Where to find extensions
MSMDIR = 'msmbuilder/msm/'
HMMDIR = 'msmbuilder/hmm/'
CLUSTERDIR = 'msmbuilder/cluster/'
# # compiler = CompilerDetection(DISABLE_OPENMP)
compiler = CompilerDetection(True)
with open('msmbuilder/src/config.pxi', 'w') as f:
f.write('''
DEF DEBUG = {debug}
DEF OPENMP = {openmp}
'''.format(openmp=compiler.openmp_enabled, debug=False))
extensions = []
extensions.append(
Extension('msmbuilder.example_datasets._muller',
sources=[pjoin('msmbuilder', 'example_datasets', '_muller.pyx')],
include_dirs=[np.get_include()]))
extensions.append(
Extension('msmbuilder.msm._markovstatemodel',
sources=[