def test_partial_taxonomic_with_synonymy(self):
"exporting one genus which is not an accepted name."
f = self.session.query(
Family).filter(
Family.family == u'Orchidaceae').one()
bu = Genus(family=f, genus=u'Bulbophyllum') # accepted
zy = Genus(family=f, genus=u'Zygoglossum') # synonym
bu.synonyms.append(zy)
self.session.add_all([f, bu, zy])
self.session.commit()
selection = self.session.query(Genus).filter(
Genus.genus == u'Zygoglossum').all()
mock_view.set_selection(selection)
exporter = JSONExporter(mock_view)
exporter.start(self.temp_path, selection)
result = json.load(open(self.temp_path))
self.assertEquals(len(result), 1)
self.assertEquals(result[0]['rank'], 'genus')
self.assertEquals(result[0]['epithet'], 'Zygoglossum')
self.assertEquals(result[0]['ht-rank'], 'familia')
self.assertEquals(result[0]['ht-epithet'], 'Orchidaceae')
accepted = result[0].get('accepted')
self.assertTrue(isinstance(accepted, dict))
self.assertEquals(accepted['rank'], 'genus')
self.assertEquals(accepted['epithet'], 'Bulbophyllum')
self.assertEquals(accepted['ht-rank'], 'familia')
self.assertEquals(accepted['ht-epithet'], 'Orchidaceae')
def test_writes_complete_database(self):
"exporting without specifying what: export complete database"
mock_view.set_selection([])
exporter = JSONExporter(mock_view)
exporter.start(self.temp_path)
## must still check content of generated file!
result = json.load(open(self.temp_path))
self.assertEquals(len(result), 5)
families = [i for i in result if i['rank'] == 'familia']
self.assertEquals(len(families), 2)
genera = [i for i in result if i['rank'] == 'genus']
self.assertEquals(len(genera), 2)
species = [i for i in result if i['rank'] == 'species']
self.assertEquals(len(species), 1)
self.assertEquals(open(self.temp_path).read(),
"""\
[{"epithet": "Orchidaceae", "object": "taxon", "rank": "familia"},
{"epithet": "Myrtaceae", "object": "taxon", "rank": "familia"},
{"author": "R. Br.", "epithet": "Calopogon", "ht-epithet": "Orchidaceae", \
"ht-rank": "familia", "object": "taxon", "rank": "genus"},
{"author": "", "epithet": "Panisea", "ht-epithet": "Orchidaceae", \
"ht-rank": "familia", "object": "taxon", "rank": "genus"},
{"epithet": "tuberosus", "ht-epithet": "Calopogon", "ht-rank": "genus", \
"hybrid": false, "object": "taxon", "rank": "species"}]""")
def test_writes_full_taxonomic_info(self):
"exporting one family: export full taxonomic information below family"
selection = self.session.query(Family).filter(
Family.family == u'Orchidaceae').all()
mock_view.set_selection(selection)
exporter = JSONExporter(mock_view)
exporter.start(self.temp_path, selection)
result = json.load(open(self.temp_path))
self.assertEquals(len(result), 1)
self.assertEquals(result[0]['rank'], 'familia')
self.assertEquals(result[0]['epithet'], 'Orchidaceae')
def test_writes_partial_taxonomic_info(self):
"exporting one genus: all species below genus"
selection = self.session.query(Genus).filter(
Genus.genus == u'Calopogon').all()
mock_view.set_selection(selection)
exporter = JSONExporter(mock_view)
exporter.start(self.temp_path, selection)
result = json.load(open(self.temp_path))
self.assertEquals(len(result), 1)
self.assertEquals(result[0]['rank'], 'genus')
self.assertEquals(result[0]['epithet'], 'Calopogon')
self.assertEquals(result[0]['ht-rank'], 'familia')
self.assertEquals(result[0]['ht-epithet'], 'Orchidaceae')
self.assertEquals(result[0]['author'], 'R. Br.')
def test_writes_partial_taxonomic_info_species(self):
"exporting one species: all species below species"
selection = self.session.query(
Species).filter(Species.sp == u'tuberosus').join(
Genus).filter(Genus.genus == u"Calopogon").all()
mock_view.set_selection(selection)
exporter = JSONExporter(mock_view)
exporter.start(self.temp_path, selection)
result = json.load(open(self.temp_path))
self.assertEquals(len(result), 1)
self.assertEquals(result[0]['rank'], 'species')
self.assertEquals(result[0]['epithet'], 'tuberosus')
self.assertEquals(result[0]['ht-rank'], 'genus')
self.assertEquals(result[0]['ht-epithet'], 'Calopogon')
self.assertEquals(result[0]['hybrid'], False)
