Python detect_sv示例

示例#1

文件： variation.py 项目： mcicdata/bcbb

def detect_sv(data):
    """Detect structural variation for input sample.
    """
    sv_todo = data["config"]["algorithm"].get("sv_detection", None)
    if sv_todo is not None and data.get("fastq2"):
        if sv_todo == "hydra":
            sv_calls = hydra.detect_sv(data["work_bam"], data["genome_build"],
                                       data["dirs"], data["config"])
        else:
            raise ValueError("Unexpected structural variation method:{}".format(sv_todo))
    return [[data]]

示例#2

文件： variation.py 项目： rwness/bcbb

def detect_sv(data):
    """Detect structural variation for input sample.
    """
    sv_todo = data["config"]["algorithm"].get("sv_detection", None)
    if sv_todo is not None and data.get("fastq2"):
        if sv_todo == "hydra":
            sv_calls = hydra.detect_sv(data["work_bam"], data["genome_build"],
                                       data["dirs"], data["config"])
        else:
            raise ValueError("Unexpected structural variation method:{}".format(sv_todo))
    return [[data]]