def _dup_samples_by_variantcaller(samples, require_bam=True):
"""Prepare samples by variant callers, duplicating any with multiple callers.
"""
samples = [utils.to_single_data(x) for x in samples]
samples = germline.split_somatic(samples)
to_process = []
extras = []
for data in samples:
added = False
for add in handle_multiple_callers(data, "variantcaller", require_bam=require_bam):
added = True
to_process.append([add])
if not added:
data = _handle_precalled(data)
extras.append([data])
return to_process, extras
def _dup_samples_by_variantcaller(samples, require_bam=True):
"""Prepare samples by variant callers, duplicating any with multiple callers.
"""
samples = [utils.to_single_data(x) for x in samples]
samples = germline.split_somatic(samples)
to_process = []
extras = []
for data in samples:
added = False
for add in handle_multiple_callers(data, "variantcaller", require_bam=require_bam):
added = True
to_process.append([add])
if not added:
data = _handle_precalled(data)
extras.append([data])
return to_process, extras