def process_articles(input_filename, writer, mappings):
tar = tarfile.open(input_filename, 'r:gz')
for tar_info, journal in get_datasets(tar, types=('Article',)):
try:
process_article(journal['recordList'], writer, mappings)
except Exception:
traceback.print_exc(file=sys.stderr)
def process_articles(input_filename, writer, mappings):
tar = tarfile.open(input_filename, 'r:gz')
for tar_info, journal in get_datasets(tar, types=('Article',)):
try:
process_article(journal['recordList'], writer, mappings)
except Exception:
traceback.print_exc(file=sys.stderr)
tar = tarfile.open('../parsed-recent/articles-unified.bibjson.tar.gz', 'r:gz')
mappings = defaultdict(dict)
def format_article(article, mappings, records):
authors = ', '.join(normalize_field(a, mappings, records).get('name', '-').replace(',', '').replace('.', '') for a in article.get('author', ()))
return '%30s %10s %80s %100s' % (
article.get('doi', '')[:30].ljust(30),
article.get('pmid', '')[:10].ljust(10),
article.get('title', '')[:80].ljust(80),
authors[:100].ljust(100),
)
for tar_info, dataset in get_datasets(tar, ('Article',)):
records = dataset['recordList']
articles = [r for r in records if r.get('type') == 'Article']
canonical, fields = majority_vote(records, ('Article',), mappings)
records = dict((r['id'], r) for r in records)
for record in records:
v = compare(canonical, record, records)
print v
print '='*80
print format_article(canonical, mappings, records)
print '-'*80
for article in articles:
print format_article(article, mappings, records)
def process_errors(input_filename, writer, mappings):
tar = tarfile.open(input_filename, 'r:gz')
for tar_info, dataset in get_datasets(tar, types=None):
process_error(dataset['recordList'], writer, mappings)
def process_citations(input_filename, writer, mappings):
tar = tarfile.open(input_filename, 'r:gz')
for tar_info, journal in get_datasets(tar, types=('Article',)):
process_citation(journal['recordList'], writer, mappings)
def process_errors(input_filename, writer, mappings):
tar = tarfile.open(input_filename, 'r:gz')
for tar_info, dataset in get_datasets(tar, types=None):
process_error(dataset['recordList'], writer, mappings)
def process_citations(input_filename, writer, mappings):
tar = tarfile.open(input_filename, 'r:gz')
for tar_info, journal in get_datasets(tar, types=('Article',)):
process_citation(journal['recordList'], writer, mappings)
