def cluster_dispatcher(args=sys.argv[1:]):
"""Parses command line and calls the different processing functions
"""
# If --clear-logs the log files are cleared
if "--clear-logs" in args:
clear_log_files(LOG_FILES)
command = command_handling(args, COMMAND_LOG)
# Parses command line arguments.
command_args = a.parse_and_check(command)
resume = command_args.resume
if command_args.resume:
# Keep the debug option if set
debug = command_args.debug
# Restore the args of the call to resume from the command log file
stored_command = StoredCommand(args, COMMAND_LOG, DIRS_LOG)
command = Command(None, stored_command=stored_command)
# Logs the issued command and the resumed command
session_file = os.path.join(stored_command.output_dir, SESSIONS_LOG)
stored_command.log_command(session_file=session_file)
# Parses resumed arguments.
command_args = a.parse_and_check(command)
if command_args.predictions is None:
command_args.predictions = os.path.join(stored_command.output_dir, DEFAULT_OUTPUT)
else:
if command_args.output_dir is None:
command_args.output_dir = a.NOW
if command_args.predictions is None:
command_args.predictions = os.path.join(command_args.output_dir, DEFAULT_OUTPUT)
if len(os.path.dirname(command_args.predictions).strip()) == 0:
command_args.predictions = os.path.join(command_args.output_dir, command_args.predictions)
directory = u.check_dir(command_args.predictions)
session_file = os.path.join(directory, SESSIONS_LOG)
u.log_message(command.command + "\n", log_file=session_file)
try:
defaults_file = open(DEFAULTS_FILE, "r")
contents = defaults_file.read()
defaults_file.close()
defaults_copy = open(os.path.join(directory, DEFAULTS_FILE), "w", 0)
defaults_copy.write(contents)
defaults_copy.close()
except IOError:
pass
u.sys_log_message(u"%s\n" % os.path.abspath(directory), log_file=DIRS_LOG)
# Creates the corresponding api instance
if resume and debug:
command_args.debug = True
api = a.get_api_instance(command_args, u.check_dir(session_file))
# Selects the action to perform
if has_train(command_args) or has_test(command_args) or command_args.cluster_datasets is not None:
output_args = a.get_output_args(api, command_args, resume)
a.transform_args(command_args, command.flags, api, command.user_defaults)
compute_output(**output_args)
u.log_message("_" * 80 + "\n", log_file=session_file)
def delete_dispatcher(args=sys.argv[1:]):
"""Parses command line and calls the different processing functions
"""
command = command_handling(args, COMMAND_LOG)
# Parses command line arguments.
command_args = a.parse_and_check(command)
resume = command_args.resume
if command_args.resume:
# Keep the debug option if set
debug = command_args.debug
# Restore the args of the call to resume from the command log file
stored_command = StoredCommand(args, COMMAND_LOG, DIRS_LOG)
command = Command(None, stored_command=stored_command)
# Logs the issued command and the resumed command
session_file = os.path.join(stored_command.output_dir, SESSIONS_LOG)
stored_command.log_command(session_file=session_file)
# Parses resumed arguments.
command_args = a.parse_and_check(command)
else:
if command_args.output_dir is None:
command_args.output_dir = a.NOW
directory = u.check_dir(os.path.join(command_args.output_dir, "tmp"))
session_file = os.path.join(directory, SESSIONS_LOG)
u.log_message(command.command + "\n", log_file=session_file)
try:
defaults_file = open(DEFAULTS_FILE, 'r')
contents = defaults_file.read()
defaults_file.close()
defaults_copy = open(os.path.join(directory, DEFAULTS_FILE),
'w', 0)
defaults_copy.write(contents)
defaults_copy.close()
except IOError:
pass
u.sys_log_message(u"%s\n" % os.path.abspath(directory),
log_file=DIRS_LOG)
# If --clear-logs the log files are cleared
if "--clear-logs" in args:
clear_log_files(LOG_FILES)
# Creates the corresponding api instance
if resume and debug:
command_args.debug = True
api = a.get_api_instance(command_args, u.check_dir(session_file))
delete_resources(command_args, api)
u.log_message("_" * 80 + "\n", log_file=session_file)
def delete_dispatcher(args=sys.argv[1:]):
"""Parses command line and calls the different processing functions
"""
command = command_handling(args, COMMAND_LOG)
# Parses command line arguments.
command_args = a.parse_and_check(command)
resume = command_args.resume
if command_args.resume:
# Keep the debug option if set
debug = command_args.debug
# Restore the args of the call to resume from the command log file
stored_command = StoredCommand(args, COMMAND_LOG, DIRS_LOG)
command = Command(None, stored_command=stored_command)
# Logs the issued command and the resumed command
session_file = os.path.join(stored_command.output_dir, SESSIONS_LOG)
stored_command.log_command(session_file=session_file)
# Parses resumed arguments.
command_args = a.parse_and_check(command)
else:
if command_args.output_dir is None:
command_args.output_dir = a.NOW
directory = u.check_dir(os.path.join(command_args.output_dir, "tmp"))
session_file = os.path.join(directory, SESSIONS_LOG)
u.log_message(command.command + "\n", log_file=session_file)
try:
defaults_file = open(DEFAULTS_FILE, 'r')
contents = defaults_file.read()
defaults_file.close()
defaults_copy = open(os.path.join(directory, DEFAULTS_FILE), 'w',
0)
defaults_copy.write(contents)
defaults_copy.close()
except IOError:
pass
u.sys_log_message(u"%s\n" % os.path.abspath(directory),
log_file=DIRS_LOG)
# If --clear-logs the log files are cleared
if "--clear-logs" in args:
clear_log_files(LOG_FILES)
# Creates the corresponding api instance
if resume and debug:
command_args.debug = True
api = a.get_api_instance(command_args, u.check_dir(session_file))
delete_resources(command_args, api)
u.log_message("_" * 80 + "\n", log_file=session_file)
def analyze_dispatcher(args=sys.argv[1:]):
"""Main processing of the parsed options for BigMLer analyze
"""
# If --clear-logs the log files are cleared
if "--clear-logs" in args:
clear_log_files(LOG_FILES)
command = command_handling(args, COMMAND_LOG)
# Parses command line arguments.
command_args = command.parser.parse_args(command.args)
resume = command_args.resume
if resume:
# Keep the debug option if set
debug = command_args.debug
# Restore the args of the call to resume from the command log file
stored_command = StoredCommand(args, COMMAND_LOG, DIRS_LOG)
command = Command(None, stored_command=stored_command)
# Logs the issued command and the resumed command
session_file = os.path.join(stored_command.output_dir, SESSIONS_LOG)
stored_command.log_command(session_file=session_file)
# Parses resumed arguments.
command_args = command.parser.parse_args(command.args)
command_args.debug = debug
else:
if command_args.output_dir is None:
command_args.output_dir = a.NOW
session_file = os.path.join(command_args.output_dir,
SESSIONS_LOG)
# If logging is required, open the file for logging
log = None
if command_args.log_file:
u.check_dir(command_args.log_file)
log = command_args.log_file
# If --clear_logs the log files are cleared
if command_args.clear_logs:
clear_log_files([log])
if command_args.model_fields:
model_fields = command_args.model_fields.split(',')
command_args.model_fields_ = [model_field.strip()
for model_field in model_fields]
else:
command_args.model_fields_ = {}
u.sys_log_message(u"%s\n" % os.path.abspath(command_args.output_dir),
log_file=DIRS_LOG)
session_file = os.path.join(command_args.output_dir, SESSIONS_LOG)
# create api instance form args
api = a.get_api_instance(command_args,
u.check_dir(session_file))
# --maximize flag will be deprecated. Use --optimize flag.
if command_args.maximize is not None and command_args.optimize is None:
command_args.optimize = command_args.maximize
incompatible_flags = [command_args.cv, command_args.features,
command_args.nodes]
if sum([int(bool(flag)) for flag in incompatible_flags]) > 1:
sys.exit("The following flags cannot be used together:\n --features"
"\n --cross-validation\n --nodes")
# k-fold cross-validation
if command_args.cv and command_args.dataset is not None:
create_kfold_cv(command_args, api, command.common_options,
resume=resume)
# features analysis
if command_args.features:
create_features_analysis(command_args, api, command.common_options,
resume=resume)
# node threshold analysis
if command_args.nodes:
create_nodes_analysis(command_args, api, command.common_options,
resume=resume)
def cluster_dispatcher(args=sys.argv[1:]):
"""Parses command line and calls the different processing functions
"""
# If --clear-logs the log files are cleared
if "--clear-logs" in args:
clear_log_files(LOG_FILES)
command = command_handling(args, COMMAND_LOG)
# Parses command line arguments.
command_args = a.parse_and_check(command)
resume = command_args.resume
if command_args.resume:
# Keep the debug option if set
debug = command_args.debug
# Restore the args of the call to resume from the command log file
stored_command = StoredCommand(args, COMMAND_LOG, DIRS_LOG)
command = Command(None, stored_command=stored_command)
# Logs the issued command and the resumed command
session_file = os.path.join(stored_command.output_dir, SESSIONS_LOG)
stored_command.log_command(session_file=session_file)
# Parses resumed arguments.
command_args = a.parse_and_check(command)
if command_args.predictions is None:
command_args.predictions = os.path.join(stored_command.output_dir,
DEFAULT_OUTPUT)
else:
if command_args.output_dir is None:
command_args.output_dir = a.NOW
if command_args.predictions is None:
command_args.predictions = os.path.join(command_args.output_dir,
DEFAULT_OUTPUT)
if len(os.path.dirname(command_args.predictions).strip()) == 0:
command_args.predictions = os.path.join(command_args.output_dir,
command_args.predictions)
directory = u.check_dir(command_args.predictions)
session_file = os.path.join(directory, SESSIONS_LOG)
u.log_message(command.command + "\n", log_file=session_file)
try:
defaults_file = open(DEFAULTS_FILE, 'r')
contents = defaults_file.read()
defaults_file.close()
defaults_copy = open(os.path.join(directory, DEFAULTS_FILE), 'w',
0)
defaults_copy.write(contents)
defaults_copy.close()
except IOError:
pass
u.sys_log_message(u"%s\n" % os.path.abspath(directory),
log_file=DIRS_LOG)
# Creates the corresponding api instance
if resume and debug:
command_args.debug = True
api = a.get_api_instance(command_args, u.check_dir(session_file))
# Selects the action to perform
if (has_train(command_args) or has_test(command_args)
or command_args.cluster_datasets is not None):
output_args = a.get_output_args(api, command_args, resume)
a.transform_args(command_args, command.flags, api,
command.user_defaults)
compute_output(**output_args)
u.log_message("_" * 80 + "\n", log_file=session_file)
def analyze_dispatcher(args=sys.argv[1:]):
"""Main processing of the parsed options for BigMLer analyze
"""
# If --clear-logs the log files are cleared
if "--clear-logs" in args:
clear_log_files(LOG_FILES)
command = command_handling(args, COMMAND_LOG)
# Parses command line arguments.
command_args = command.parser.parse_args(command.args)
resume = command_args.resume
if resume:
# Keep the debug option if set
debug = command_args.debug
# Restore the args of the call to resume from the command log file
stored_command = StoredCommand(args, COMMAND_LOG, DIRS_LOG)
command = Command(None, stored_command=stored_command)
# Logs the issued command and the resumed command
session_file = os.path.join(stored_command.output_dir, SESSIONS_LOG)
stored_command.log_command(session_file=session_file)
# Parses resumed arguments.
command_args = command.parser.parse_args(command.args)
command_args.debug = debug
else:
if command_args.output_dir is None:
command_args.output_dir = a.NOW
session_file = os.path.join(command_args.output_dir, SESSIONS_LOG)
# If logging is required, open the file for logging
log = None
if command_args.log_file:
u.check_dir(command_args.log_file)
log = command_args.log_file
# If --clear_logs the log files are cleared
if command_args.clear_logs:
clear_log_files([log])
if command_args.model_fields:
model_fields = command_args.model_fields.split(',')
command_args.model_fields_ = [
model_field.strip() for model_field in model_fields
]
else:
command_args.model_fields_ = {}
u.sys_log_message(u"%s\n" % os.path.abspath(command_args.output_dir),
log_file=DIRS_LOG)
session_file = os.path.join(command_args.output_dir, SESSIONS_LOG)
# create api instance form args
api = a.get_api_instance(command_args, u.check_dir(session_file))
# --maximize flag will be deprecated. Use --optimize flag.
if command_args.maximize is not None and command_args.optimize is None:
command_args.optimize = command_args.maximize
incompatible_flags = [
command_args.cv, command_args.features, command_args.nodes
]
if sum([int(bool(flag)) for flag in incompatible_flags]) > 1:
sys.exit("The following flags cannot be used together:\n --features"
"\n --cross-validation\n --nodes")
# k-fold cross-validation
if command_args.cv and command_args.dataset is not None:
create_kfold_cv(command_args,
api,
command.common_options,
resume=resume)
# features analysis
if command_args.features:
create_features_analysis(command_args,
api,
command.common_options,
resume=resume)
# node threshold analysis
if command_args.nodes:
create_nodes_analysis(command_args,
api,
command.common_options,
resume=resume)
def analyze_dispatcher(args=sys.argv[1:]):
"""Main processing of the parsed options for BigMLer analyze
"""
# If --clear-logs the log files are cleared
if "--clear-logs" in args:
clear_log_files(LOG_FILES)
command = command_handling(args, COMMAND_LOG)
# Parses command line arguments.
command_args = command.parser.parse_args(command.args)
resume = command_args.resume
if resume:
# Keep the debug option if set
debug = command_args.debug
# Restore the args of the call to resume from the command log file
stored_command = StoredCommand(args, COMMAND_LOG, DIRS_LOG)
command = Command(None, stored_command=stored_command)
# Logs the issued command and the resumed command
session_file = os.path.join(stored_command.output_dir, SESSIONS_LOG)
stored_command.log_command(session_file=session_file)
# Parses resumed arguments.
command_args = command.parser.parse_args(command.args)
else:
if command_args.output_dir is None:
command_args.output_dir = a.NOW
session_file = os.path.join(command_args.output_dir,
SESSIONS_LOG)
csv_properties = {}
# If logging is required, open the file for logging
log = None
if command_args.log_file:
u.check_dir(command_args.log_file)
log = command_args.log_file
# If --clear_logs the log files are cleared
if command_args.clear_logs:
clear_log_files([log])
if command_args.model_fields:
model_fields = command_args.model_fields.split(',')
command_args.model_fields_ = map(str.strip, model_fields)
else:
command_args.model_fields_ = {}
with open(DIRS_LOG, "a", 0) as directory_log:
directory_log.write("%s\n" %
os.path.abspath(command_args.output_dir))
session_file = os.path.join(command_args.output_dir, SESSIONS_LOG)
# create api instance form args
api = a.get_api_instance(command_args,
u.check_dir(session_file))
# k-fold cross-validation
if (command_args.cv and command_args.dataset is not None):
create_kfold_cv(command_args, api, command.common_options,
resume=resume)
# features analysis
if command_args.features:
create_features_analysis(command_args, api, command.common_options,
resume=resume)
# node threshold analysis
if command_args.nodes:
create_nodes_analysis(command_args, api, command.common_options,
resume=resume)