def __init__(self, context, request):
AnalysesView.__init__(self, context, request)
self.icon = "++resource++bika.lims.images/worksheet_big.png"
self.contentFilter = {}
self.show_select_row = False
self.show_sort_column = False
self.allow_edit = True
self.columns = {
'Pos': {'title': _('Position')},
'DueDate': {'title': _('Due date')},
'Category': {'title': _('Category')},
'Service': {'title': _('Analysis')},
'Result': {'title': _('Result')},
'Uncertainty': {'title': _('+-')},
'retested': {'title': _('Retested'), 'type':'boolean'},
## 'Attachments': {'title': _('Attachments')},
'state_title': {'title': _('State')},
}
self.review_states = [
{'title': _('All'), 'id':'all',
'transitions': ['submit', 'verify', 'retract', 'unassign'],
'columns':['Pos',
'Category',
'Service',
'Result',
'Uncertainty',
## 'Attachments',
'DueDate',
'state_title'],
},
]
def __init__(self, context, request):
AnalysesView.__init__(self, context, request)
self.contentFilter = {'portal_type':'ReferenceAnalysis',
'path': {'query':"/".join(self.context.getPhysicalPath()),
'level':0}}
self.show_select_row = False
self.show_sort_column = False
self.show_select_column = False
self.allow_edit = False
self.columns = {
'id': {'title': _('ID')},
'Category': {'title': _('Category')},
'Service': {'title': _('Service')},
'Worksheet': {'title': _('Worksheet')},
'Result': {'title': _('Result')},
'Uncertainty': {'title': _('+-')},
'DueDate': {'title': _('Due Date')},
'retested': {'title': _('Retested'), 'type':'boolean'},
'state_title': {'title': _('State')},
}
self.review_states = [
{'id':'all',
'title': _('All'),
'transitions': [],
'columns':['id',
'Category',
'Service',
'Worksheet',
'Result',
'Uncertainty',
'DueDate',
'state_title'],
},
]
def __init__(self, context, request, **kwargs):
AnalysesView.__init__(self, context, request, **kwargs)
self.form_id = "{}_qcanalyses".format(api.get_uid(context))
self.allow_edit = False
self.show_select_column = False
self.show_search = False
self.omit_form = True
self.catalog = CATALOG_ANALYSIS_LISTING
self.contentFilter = {
"portal_type": "ReferenceAnalysis",
"getInstrumentUID": api.get_uid(self.context),
"sort_on": "getResultCaptureDate",
"sort_order": "reverse"
}
self.columns["getReferenceAnalysesGroupID"] = {
"title": _("QC Sample ID"),
"sortable": False
}
self.columns["Partition"] = {
"title": _("Reference Sample"),
"sortable": False
}
self.columns["Retractions"] = {"title": "", "sortable": False}
self.review_states[0]["columns"] = [
"Service", "getReferenceAnalysesGroupID", "Partition", "Result",
"Uncertainty", "CaptureDate", "Retractions"
]
self.review_states[0]["transitions"] = [{}]
self.chart = EvolutionChart()
def __init__(self, context, request):
BaseView.__init__(self, context, request)
self.catalog = 'bika_analysis_catalog'
self.contentFilter = {'portal_type':'Analysis',
'review_state':'sample_received',
'worksheetanalysis_review_state':'unassigned'}
self.icon = self.portal_url + "/++resource++bika.lims.images/worksheet_big.png"
self.contentFilter = {}
self.show_select_row = False
self.show_sort_column = False
self.allow_edit = True
self.show_categories = False
self.expand_all_categories = False
self.columns = {
'Pos': {'title': _('Position')},
'DueDate': {'title': _('Due Date')},
'Service': {'title': _('Analysis')},
'getPriority': {'title': _('Priority')},
'Method': {'title': _('Method')},
'DetectionLimit': {
'title': _('DL'),
'sortable': False,
'toggle': False},
'Result': {'title': _('Result'),
'input_width': '6',
'input_class': 'ajax_calculate numeric',
'sortable': False},
'Uncertainty': {'title': _('+-')},
'ResultDM': {'title': _('Dry')},
'retested': {'title': "<img src='++resource++bika.lims.images/retested.png' title='%s'/>" % _('Retested'),
'type':'boolean'},
'Attachments': {'title': _('Attachments')},
'Instrument': {'title': _('Instrument')},
'state_title': {'title': _('State')},
'Priority': { 'title': _('Priority'), 'index': 'Priority'},
}
self.review_states = [
{'id':'default',
'title': _('All'),
'contentFilter':{},
'transitions': [{'id':'submit'},
{'id':'verify'},
{'id':'retract'},
{'id':'unassign'}],
'columns':['Pos',
'Service',
'Priority',
'Method',
'Instrument',
'DetectionLimit',
'Result',
'Uncertainty',
'DueDate',
'state_title',
'Attachments']
},
]
def __init__(self, context, request):
BaseView.__init__(self, context, request)
self.context = context
self.request = request
self.analyst = None
self.instrument = None
self.contentFilter = {
'getWorksheetUID': context.UID(),
'sort_on': 'sortable_title'
}
self.sort_on = 'sortable_title'
self.icon = self.portal_url + "/++resource++bika.lims.images/worksheet_big.png"
self.allow_edit = True
self.show_categories = False
self.expand_all_categories = False
self.columns = {
'Pos': {'title': _('Position')},
'DueDate': {'title': _('Due Date')},
'Service': {'title': _('Analysis')},
'Method': {'title': _('Method')},
'DetectionLimit': {
'title': _('DL'),
'sortable': False,
'toggle': False},
'Result': {'title': _('Result'),
'input_width': '6',
'input_class': 'ajax_calculate numeric',
'sortable': False},
'Uncertainty': {'title': _('+-')},
'retested': {'title': "<img src='++resource++bika.lims.images/retested.png' title='%s'/>" % _('Retested'),
'type':'boolean'},
'Attachments': {'title': _('Attachments')},
'Instrument': {'title': _('Instrument')},
'state_title': {'title': _('State')},
}
self.review_states = [
{'id':'default',
'title': _('All'),
'contentFilter':{},
'transitions': [{'id':'submit'},
{'id':'verify'},
{'id':'retract'},
{'id':'unassign'}],
'columns':['Pos',
'Service',
'Method',
'Instrument',
'DetectionLimit',
'Result',
'Uncertainty',
'DueDate',
'state_title',
'Attachments']
},
]
self.bika_setup = api.get_bika_setup()
self.uids_strpositions = self.get_uids_strpositions()
self.items_rowspans = dict()
def __init__(self, context, request):
AnalysesView.__init__(self, context, request)
self.catalog = 'bika_analysis_catalog'
self.contentFilter = {'portal_type':'ReferenceAnalysis',
'path': {'query':"/".join(self.context.getPhysicalPath()),
'level':0}}
self.show_select_row = False
self.show_sort_column = False
self.show_select_column = False
self.allow_edit = False
self.columns = {
'id': {'title': _('ID'), 'toggle':False},
'getReferenceAnalysesGroupID':
{'title': _('QC Sample ID'),
'sortable': False,
'toggle': True},
'Category': {'title': _('Category'), 'toggle': True},
'Service': {'title': _('Service'), 'toggle':True},
'Worksheet': {'title': _('Worksheet'), 'toggle':True},
'Method': {
'title': _('Method'),
'sortable': False,
'toggle': True},
'Instrument': {
'title': _('Instrument'),
'sortable': False,
'toggle': True},
'Result': {'title': _('Result'), 'toggle':True},
'Captured': {'title': _('Captured'), 'toggle':True},
'Uncertainty': {'title': _('+-'), 'toggle':True},
'DueDate': {'title': _('Due Date'),
'index': 'getDueDate',
'toggle':True},
'retested': {'title': _('Retested'), 'type':'boolean', 'toggle':True},
'state_title': {'title': _('State'), 'toggle':True},
}
self.review_states = [
{'id':'default',
'title': _('All'),
'contentFilter':{},
'transitions': [],
'columns':['id',
'getReferenceAnalysesGroupID',
'Category',
'Service',
'Worksheet',
'Method',
'Instrument',
'Result',
'Captured',
'Uncertainty',
'DueDate',
'state_title'],
},
]
self.anjson = {}
def __init__(self, context, request):
AnalysesView.__init__(self, context, request)
self.catalog = 'bika_analysis_catalog'
self.contentFilter = {'portal_type':'ReferenceAnalysis',
'path': {'query':"/".join(self.context.getPhysicalPath()),
'level':0}}
self.show_select_row = False
self.show_sort_column = False
self.show_select_column = False
self.allow_edit = False
self.columns = {
'id': {'title': _('ID'), 'toggle':False},
'getReferenceAnalysesGroupID': {'title': _('QC Sample ID'), 'toggle': True},
'Category': {'title': _('Category'), 'toggle':True},
'Service': {'title': _('Service'), 'toggle':True},
'Worksheet': {'title': _('Worksheet'), 'toggle':True},
'Method': {
'title': _('Method'),
'sortable': False,
'toggle': True},
'Instrument': {
'title': _('Instrument'),
'sortable': False,
'toggle': True},
'Result': {'title': _('Result'), 'toggle':True},
'Captured': {'title': _('Captured'), 'toggle':True},
'Uncertainty': {'title': _('+-'), 'toggle':True},
'DueDate': {'title': _('Due Date'),
'index': 'getDueDate',
'toggle':True},
'retested': {'title': _('Retested'), 'type':'boolean', 'toggle':True},
'state_title': {'title': _('State'), 'toggle':True},
}
self.review_states = [
{'id':'default',
'title': _('All'),
'contentFilter':{},
'transitions': [],
'columns':['id',
'getReferenceAnalysesGroupID',
'Category',
'Service',
'Worksheet',
'Method',
'Instrument',
'Result',
'Captured',
'Uncertainty',
'DueDate',
'state_title'],
},
]
self.anjson = {}
def __init__(self, context, request, **kwargs):
AnalysesView.__init__(self, context, request)
self.show_select_column = False
self.allow_edit = False
self.show_workflow_action_buttons = False
for k, v in kwargs.items():
self.contentFilter[k] = v
self.columns['Request'] = {'title': _("Request"), 'sortable': False}
# Add Request column
pos = self.review_states[0]['columns'].index('Service') + 1
self.review_states[0]['columns'].insert(pos, 'Request')
def __init__(self, context, request, **kwargs):
AnalysesView.__init__(self, context, request)
for k,v in kwargs.items():
self.contentFilter[k] = v
if kwargs.get('getPointOfCapture', '') == 'lab':
self.allow_edit = False
self.columns['Request'] = {'title': _("Request"),
'sortable':False}
# Add Request column
pos = self.review_states[0]['columns'].index('Service') + 1
self.review_states[0]['columns'].insert(pos, 'Request')
def __call__(self):
ar = self.context
self.tables = {}
for poc in POINTS_OF_CAPTURE:
if self.context.getAnalyses(getPointOfCapture=poc):
t = AnalysesView(ar,
self.request,
getPointOfCapture = poc)
t.allow_edit = False
t.show_select_column = False
self.tables[POINTS_OF_CAPTURE.getValue(poc)] = t.contents_table()
return self.template()
def __init__(self, context, request, **kwargs):
AnalysesView.__init__(self, context, request)
self.show_select_column = False
self.allow_edit = False
self.show_workflow_action_buttons = False
for k,v in kwargs.items():
self.contentFilter[k] = v
self.columns['Request'] = {'title': _("Request"),
'sortable':False}
# Add Request column
pos = self.review_states[0]['columns'].index('Service') + 1
self.review_states[0]['columns'].insert(pos, 'Request')
def __init__(self, context, request, **kwargs):
AnalysesView.__init__(self, context, request)
self.show_select_column = False
self.allow_edit = False
self.show_workflow_action_buttons = False
for k, v in kwargs.items():
self.contentFilter[k] = v
self.columns["Request"] = {"title": _("Request"), "sortable": False}
self.columns["Priority"] = {"title": _("Priority"), "sortable": False}
# Add Request and Priority columns
pos = self.review_states[0]["columns"].index("Service") + 1
self.review_states[0]["columns"].insert(pos, "Request")
pos += 1
self.review_states[0]["columns"].insert(pos, "Priority")
def __init__(self, context, request, **kwargs):
AnalysesView.__init__(self, context, request)
self.show_workflow_action_buttons = False
for k,v in kwargs.items():
self.contentFilter[k] = v
self.contentFilter['getSampleUID'] = context.UID()
self.columns['Request'] = {
'title': _("Request"),
'attr': 'getParentTitle',
'replace_url': 'getParentURL',
'sortable': False}
# Add Request columns
pos = self.review_states[0]['columns'].index('Service') + 1
self.review_states[0]['columns'].insert(pos, 'Request')
pos += 1
def folderitems(self):
"""Returns an array of dictionaries, each dictionary represents an
analysis row to be rendered in the list. The array returned is sorted
in accordance with the layout positions set for the analyses this
worksheet contains when the analyses were added in the worksheet.
:returns: list of dicts with the items to be rendered in the list
"""
items = BaseView.folderitems(self)
# Fill empty positions from the layout with fake rows. The worksheet
# can be generated by making use of a WorksheetTemplate, so there is
# the chance that some slots of this worksheet being empty. We need to
# render a row still, at lest to display the slot number (Pos)
self.fill_empty_slots(items)
# Sort the items in accordance with the layout
items = sorted(items, key=itemgetter("pos_sortkey"))
# Fill the slot header cells (first cell of each row). Each slot
# contains the analyses that belong to the same parent
# (AnalysisRequest, ReferenceSample), so the information about the
# parent must be displayed in the first cell of each slot.
self.fill_slots_headers(items)
return items
def isItemAllowed(self, obj):
"""
Checks if the passed in Analysis must be displayed in the list. If the
'filtering by department' option is enabled in Bika Setup, this
function checks if the Analysis Service associated to the Analysis
is assigned to any of the currently selected departments (information
stored in a cookie). In addition, the function checks if the Analysis
matches with the filtering criterias set in the advanced filter bar.
If no criteria in the advanced filter bar has been set and the option
'filtering by department' is disblaed, returns True.
:param obj: A single Analysis brain
:type obj: CatalogBrain
:returns: True if the item can be added to the list. Otherwise, False
:rtype: bool
"""
# The isItemAllowed function from the base class AnalysesView already
# takes into account filtering by department
allowed = AnalysesView.isItemAllowed(self, obj)
if not allowed:
return False
if self.filter_bar_enabled:
# Advanced filter bar is enabled. Check if the Analysis matches
# with the filtering criterias.
return self.filter_bar_check_item(obj)
# By default, display the analysis
return True
def isItemAllowed(self, obj):
"""
Checks if the passed in Analysis must be displayed in the list. If the
'filtering by department' option is enabled in Bika Setup, this
function checks if the Analysis Service associated to the Analysis
is assigned to any of the currently selected departments (information
stored in a cookie). In addition, the function checks if the Analysis
matches with the filtering criterias set in the advanced filter bar.
If no criteria in the advanced filter bar has been set and the option
'filtering by department' is disblaed, returns True.
:param obj: A single Analysis brain
:type obj: CatalogBrain
:returns: True if the item can be added to the list. Otherwise, False
:rtype: bool
"""
# The isItemAllowed function from the base class AnalysesView already
# takes into account filtering by department
allowed = AnalysesView.isItemAllowed(self, obj)
if not allowed:
return False
if self.filter_bar_enabled:
# Advanced filter bar is enabled. Check if the Analysis matches
# with the filtering criterias.
return self.filter_bar_check_item(obj)
# By default, display the analysis
return True
def __init__(self, context, request, **kwargs):
AnalysesView.__init__(self, context, request)
self.show_workflow_action_buttons = False
for k, v in kwargs.items():
self.contentFilter[k] = v
self.contentFilter['getSampleUID'] = context.UID()
self.columns['Request'] = {
'title': _("Request"),
'attr': 'getParentTitle',
'replace_url': 'getParentURL',
'sortable': False
}
# Add Request columns
pos = self.review_states[0]['columns'].index('Service') + 1
self.review_states[0]['columns'].insert(pos, 'Request')
pos += 1
def folderitems(self):
self.contentsMethod = self.context.getAnalyses
items = AnalysesView.folderitems(self)
for x in range(len(items)):
if not items[x].has_key('obj'):
continue
obj = items[x]['obj']
ar = obj.aq_parent
items[x]['replace']['Request'] = "<a href='%s'>%s</a>"%(ar.absolute_url(), ar.Title())
return items
def folderitems(self):
self.contentsMethod = self.context.getAnalyses
items = AnalysesView.folderitems(self)
for x in range(len(items)):
if not items[x].has_key("obj"):
continue
obj = items[x]["obj"]
ar = obj.aq_parent
items[x]["replace"]["Request"] = "<a href='%s'>%s</a>" % (ar.absolute_url(), ar.Title())
items[x]["replace"]["Priority"] = " " # TODO this space is required for it to work
return items
def __call__(self):
ar = self.context
workflow = getToolByName(ar, 'portal_workflow')
if workflow.getInfoFor(ar, 'cancellation_state') == "cancelled":
self.request.response.redirect(ar.absolute_url())
elif not(getSecurityManager().checkPermission(ManageResults, ar)):
self.request.response.redirect(ar.absolute_url())
else:
self.tables = {}
for poc in POINTS_OF_CAPTURE:
if self.context.getAnalyses(getPointOfCapture=poc):
t = AnalysesView(ar,
self.request,
getPointOfCapture = poc)
t.allow_edit = True
t.review_states[0]['transitions'] = ['submit', 'retract', 'verify']
t.show_select_column = True
self.tables[POINTS_OF_CAPTURE.getValue(poc)] = t.contents_table()
return self.template()
def folderitems(self):
self.contentsMethod = self.context.getAnalyses
items = AnalysesView.folderitems(self)
for x in range(len(items)):
if not items[x].has_key('obj'):
continue
obj = items[x]['obj']
ar = obj.aq_parent
items[x]['replace']['Request'] = \
"<a href='%s'>%s</a>"%(ar.absolute_url(), ar.Title())
return items
def folderitem(self, obj, item, index):
"""
Applies new properties to the item (analysis) that is currently being
rendered as a row in the list.
:param obj: analysis to be rendered as a row in the list
:param item: dict representation of the analysis, suitable for the list
:param index: current position of the item within the list
:type obj: ATContentType/DexterityContentType
:type item: dict
:type index: int
:return: the dict representation of the item
:rtype: dict
"""
item = BaseView.folderitem(self, obj, item, index)
item_obj = api.get_object(obj)
uid = item['uid']
# Slot is the row position where all analyses sharing the same parent
# (eg. AnalysisRequest, SampleReference), will be displayed as a group
slot = self.get_item_slot(uid)
item['Pos'] = slot
# The position string contains both the slot + the position of the
# analysis within the slot: "position_sortkey" will be used to sort all
# the analyses to be displayed in the list
str_position = self.uids_strpositions[uid]
item['pos_sortkey'] = str_position
item['colspan'] = {'Pos': 1}
item['Service'] = item_obj.Title()
item['Category'] = item_obj.getCategoryTitle()
item['DueDate'] = self.ulocalized_time(item_obj, long_format=0)
item['class']['Service'] = 'service_title'
# To prevent extra loops, we compute here the number of analyses to be
# rendered within each slot. This information will be useful later for
# applying rowspan to the first cell of each slot, that contains info
# about the parent of all the analyses contained in that slot (e.g
# Analysis Request ID, Sample Type, etc.)
rowspans = self.items_rowspans.get(slot, 0) + 1
remarks = item.get('Remarks', None)
remarks_edit = 'Remarks' in item.get('allow_edit', [])
remarks_enabled = self.bika_setup.getEnableAnalysisRemarks()
if remarks_enabled and (remarks or remarks_edit):
# Increase in one unit the rowspan, cause the comment field for
# this analysis will be rendered in a new row, below the row that
# displays the current item
rowspans += 1
# We map this rowspan information in items_rowspan, that will be used
# later during the rendereing of slot headers (first cell of each row)
self.items_rowspans[slot] = rowspans
return item
def __init__(self, context, request, **kwargs):
AnalysesView.__init__(self, context, request, **kwargs)
self.columns['getReferenceAnalysesGroupID'] = {
'title': _('QC Sample ID'),
'sortable': False
}
self.columns['Partition'] = {
'title': _('Reference Sample'),
'sortable': False
}
self.columns['Retractions'] = {'title': '', 'sortable': False}
self.review_states[0]['columns'] = [
'Service', 'getReferenceAnalysesGroupID', 'Partition', 'Result',
'Uncertainty', 'CaptureDate', 'Retractions'
]
analyses = self.context.getReferenceAnalyses()
asuids = [an.UID() for an in analyses]
self.catalog = 'bika_analysis_catalog'
self.contentFilter = {'UID': asuids}
self.anjson = {}
def __init__(self, context, request, **kwargs):
AnalysesView.__init__(self, context, request, **kwargs)
self.columns['getReferenceAnalysesGroupID'] = {'title': _('QC Sample ID'),
'sortable': False}
self.columns['Partition'] = {'title': _('Reference Sample'),
'sortable': False}
self.columns['Retractions'] = {'title': '',
'sortable': False}
self.review_states[0]['columns'] = ['Service',
'getReferenceAnalysesGroupID',
'Partition',
'Result',
'Uncertainty',
'CaptureDate',
'Retractions']
analyses = self.context.getReferenceAnalyses()
asuids = [an.UID() for an in analyses]
self.catalog = 'bika_analysis_catalog'
self.contentFilter = {'UID': asuids}
self.anjson = {}
def isItemAllowed(self, obj):
"""Returns true if the current analysis to be rendered has a slot
assigned for the current layout.
:param obj: analysis to be rendered as a row in the list
:type obj: ATContentType/DexterityContentType
:return: True if the obj has an slot assigned. Otherwise, False.
:rtype: bool
"""
uid = api.get_uid(obj)
if not self.get_item_slot(uid):
logger.warning("Slot not assigned to item %s" % uid)
return False
return BaseView.isItemAllowed(self, obj)
def __init__(self, context, request, **kwargs):
AnalysesView.__init__(self, context, request, **kwargs)
self.catalog = CATALOG_ANALYSIS_LISTING
self.contentFilter = {
"portal_type": "ReferenceAnalysis",
"getInstrumentUID": api.get_uid(self.context),
"sort_on": "getResultCaptureDate",
"sort_order": "reverse"
}
self.columns['getReferenceAnalysesGroupID'] = {
'title': _('QC Sample ID'),
'sortable': False
}
self.columns['Partition'] = {
'title': _('Reference Sample'),
'sortable': False
}
self.columns['Retractions'] = {'title': '', 'sortable': False}
self.review_states[0]['columns'] = [
'Service', 'getReferenceAnalysesGroupID', 'Partition', 'Result',
'Uncertainty', 'CaptureDate', 'Retractions'
]
self.chart = EvolutionChart()
def folderitem(self, obj, item, index):
"""
In this case obj should be a brain
"""
item = AnalysesView.folderitem(self, obj, item, index)
if not item:
return None
# Worksheet
item['Worksheet'] = ''
wss = self.worksheet_catalog(getAnalysesUIDs={
"query": obj.UID,
"operator": "or"
})
if wss and len(wss) == 1:
item['Worksheet'] = wss[0].Title
anchor = '<a href="%s">%s</a>' % (wss[0].getURL(), wss[0].Title)
item['replace']['Worksheet'] = anchor
return item
def folderitem(self, obj, item, index):
"""
In this case obj should be a brain
"""
item = AnalysesView.folderitem(self, obj, item, index)
if not item:
return None
# Worksheet
item['Worksheet'] = ''
wss = self.worksheet_catalog(getAnalysesUIDs={
"query": obj.UID,
"operator": "or"
})
if wss and len(wss) == 1:
item['Worksheet'] = wss[0].Title
anchor = '<a href="%s">%s</a>' % (wss[0].getURL(), wss[0].Title)
item['replace']['Worksheet'] = anchor
return item
def folderitems(self):
items = AnalysesView.folderitems(self)
items.sort(key=itemgetter('CaptureDate'), reverse=True)
for i in range(len(items)):
obj = items[i]['obj']
imgtype = ""
if obj.portal_type == 'ReferenceAnalysis':
antype = QCANALYSIS_TYPES.getValue(obj.getReferenceType())
if obj.getReferenceType() == 'c':
imgtype = "<img title='%s' src='%s/++resource++bika.lims.images/control.png'/> " % (
antype, self.context.absolute_url())
if obj.getReferenceType() == 'b':
imgtype = "<img title='%s' src='%s/++resource++bika.lims.images/blank.png'/> " % (
antype, self.context.absolute_url())
items[i]['replace']['Partition'] = "<a href='%s'>%s</a>" % (
obj.aq_parent.absolute_url(), obj.aq_parent.id)
elif obj.portal_type == 'DuplicateAnalysis':
antype = QCANALYSIS_TYPES.getValue('d')
imgtype = "<img title='%s' src='%s/++resource++bika.lims.images/duplicate.png'/> " % (
antype, self.context.absolute_url())
items[i]['sortcode'] = '%s_%s' % (
obj.getSample().id, obj.getService().getKeyword())
else:
items[i]['sortcode'] = '%s_%s' % (
obj.getSample().id, obj.getService().getKeyword())
items[i]['before']['Service'] = imgtype
# Get retractions field
pdf = obj.getRetractedAnalysesPdfReport()
title = ''
anchor = ''
try:
if pdf:
filesize = 0
title = _('Retractions')
anchor = "<a class='pdf' target='_blank' href='%s/at_download/RetractedAnalysesPdfReport'>%s</a>" % \
(obj.absolute_url(), _("Retractions"))
filesize = pdf.get_size()
filesize = filesize / 1024 if filesize > 0 else 0
except:
# POSKeyError: 'No blob file'
# Show the record, but not the link
title = _('Retraction report unavailable')
anchor = title
items[i]['Retractions'] = title
items[i]['replace']['Retractions'] = anchor
# Create json
qcid = obj.aq_parent.id
serviceref = "%s (%s)" % (items[i]['Service'], items[i]['Keyword'])
trows = self.anjson.get(serviceref, {})
anrows = trows.get(qcid, [])
anid = '%s.%s' % (items[i]['getReferenceAnalysesGroupID'],
items[i]['id'])
rr = obj.aq_parent.getResultsRangeDict()
uid = obj.getServiceUID()
if uid in rr:
specs = rr[uid]
try:
smin = float(specs.get('min', 0))
smax = float(specs.get('max', 0))
error = float(specs.get('error', 0))
target = float(specs.get('result', 0))
result = float(items[i]['Result'])
error_amount = ((target / 100) *
error) if target > 0 else 0
upper = smax + error_amount
lower = smin - error_amount
anrow = {
'date': items[i]['CaptureDate'],
'min': smin,
'max': smax,
'target': target,
'error': error,
'erroramount': error_amount,
'upper': upper,
'lower': lower,
'result': result,
'unit': items[i]['Unit'],
'id': items[i]['uid']
}
anrows.append(anrow)
trows[qcid] = anrows
self.anjson[serviceref] = trows
except:
pass
return items
def __init__(self, context, request, **kwargs):
AnalysesView.__init__(self, context, request)
self.title = _("Analyses pending")
self.show_select_all_checkbox = False
self.show_categories = False
self.pagesize = 50
# Get temp objects that are too time consuming to obtain every time
self.worksheet_catalog = getToolByName(context,
CATALOG_WORKSHEET_LISTING)
# Check if the filter bar functionality is activated or not
self.filter_bar_enabled =\
self.context.bika_setup.getDisplayAdvancedFilterBarForAnalyses()
# each editable item needs it's own allow_edit
# which is a list of field names.
self.allow_edit = True
self.columns['AnalysisRequest'] = {
'title': _('Analysis Request'),
'attr': 'getAnalysisRequestTitle',
'replace_url': 'getAnalysisRequestURL',
'sortable': False
}
self.columns['Worksheet'] = {
'title': _('Worksheet'),
'sortable': False
}
self.review_states = [
{
'id':
'default',
'title':
_('Results pending'),
'transitions': [
{
'id': 'sample'
},
{
'id': 'submit'
},
{
'id': 'cancel'
},
# {'id': 'assign'}
],
'contentFilter': {
'review_state':
['sample_received', 'assigned', 'attachment_due'],
'cancellation_state':
'active',
},
'columns': [
'AnalysisRequest',
'Worksheet',
'Service',
'Result',
'Uncertainty',
'Partition',
'Method',
'Instrument',
'Analyst',
'state_title',
]
},
{
'id':
'to_be_verified',
'title':
_('To be verified'),
'transitions': [{
'id': 'verify'
}, {
'id': 'cancel'
}],
'contentFilter': {
'review_state': ['to_be_verified'],
'cancellation_state': 'active',
},
'columns': [
'AnalysisRequest',
'Worksheet',
'Service',
'Result',
'Uncertainty',
'Partition',
'Method',
'Instrument',
'Analyst',
'state_title',
]
},
]
def __init__(self, context, request, **kwargs):
AnalysesView.__init__(self, context, request)
self.title = _("Analyses pending")
self.show_select_all_checkbox = False
self.show_categories = False
self.pagesize = 50
# Get temp objects that are too time consuming to obtain every time
self.worksheet_catalog = getToolByName(context,
CATALOG_WORKSHEET_LISTING)
# each editable item needs it's own allow_edit
# which is a list of field names.
self.allow_edit = False
self.columns['AnalysisRequest'] = {
'title': _('Analysis Request'),
'attr': 'getRequestID',
'replace_url': 'getRequestURL',
'sortable': False
}
self.columns['Worksheet'] = {
'title': _('Worksheet'),
'sortable': False
}
self.review_states = [
{
'id':
'default',
'title':
_('Assignment pending'),
'transitions': [
{
'id': 'submit'
},
],
'contentFilter': {
'review_state': ['unassigned'],
'cancellation_state': 'active',
},
'columns': [
'AnalysisRequest',
'Service',
'Result',
'Uncertainty',
'Partition',
'Method',
'Instrument',
'DetectionLimit',
'Specification',
'state_title',
]
},
{
'id':
'results_pending',
'title':
_('Results pending'),
'transitions': [
{
'id': 'submit'
},
],
'contentFilter': {
'review_state': ['unassigned', 'assigned'],
'cancellation_state': 'active',
},
'columns': [
'AnalysisRequest',
'Worksheet',
'Service',
'Result',
'Uncertainty',
'Partition',
'Method',
'Instrument',
'DetectionLimit',
'Specification',
'Analyst',
'state_title',
]
},
{
'id':
'to_be_verified',
'title':
_('To be verified'),
'transitions': [{
'id': 'verify'
}, {
'id': 'retract'
}],
'contentFilter': {
'review_state': ['to_be_verified'],
'cancellation_state': 'active',
},
'columns': [
'AnalysisRequest',
'Worksheet',
'Service',
'Result',
'Uncertainty',
'Partition',
'Method',
'Instrument',
'DetectionLimit',
'Specification',
'Analyst',
'state_title',
]
},
{
'id':
'verified',
'title':
_('Verified'),
'transitions': [],
'contentFilter': {
'review_state': ['verified'],
'cancellation_state': 'active',
},
'columns': [
'AnalysisRequest',
'Worksheet',
'Service',
'Result',
'Uncertainty',
'Partition',
'Method',
'Instrument',
'DetectionLimit',
'Specification',
'Analyst',
'state_title',
]
},
]
def folderitems(self):
items = AnalysesView.folderitems(self)
items.sort(key=itemgetter('CaptureDate'), reverse=True)
for i in range(len(items)):
obj = items[i]['obj']
imgtype = ""
if obj.portal_type == 'ReferenceAnalysis':
antype = QCANALYSIS_TYPES.getValue(obj.getReferenceType())
if obj.getReferenceType() == 'c':
imgtype = "<img title='%s' src='%s/++resource++bika.lims.images/control.png'/> " % (antype, self.context.absolute_url())
if obj.getReferenceType() == 'b':
imgtype = "<img title='%s' src='%s/++resource++bika.lims.images/blank.png'/> " % (antype, self.context.absolute_url())
items[i]['replace']['Partition'] = "<a href='%s'>%s</a>" % (obj.aq_parent.absolute_url(), obj.aq_parent.id)
elif obj.portal_type == 'DuplicateAnalysis':
antype = QCANALYSIS_TYPES.getValue('d')
imgtype = "<img title='%s' src='%s/++resource++bika.lims.images/duplicate.png'/> " % (antype, self.context.absolute_url())
items[i]['sortcode'] = '%s_%s' % (obj.getSample().id, obj.getService().getKeyword())
else:
items[i]['sortcode'] = '%s_%s' % (obj.getSample().id, obj.getService().getKeyword())
items[i]['before']['Service'] = imgtype
# Get retractions field
pdf = obj.getRetractedAnalysesPdfReport()
title = ''
anchor = ''
try:
if pdf:
filesize = 0
title = _('Retractions')
anchor = "<a class='pdf' target='_blank' href='%s/at_download/RetractedAnalysesPdfReport'>%s</a>" % \
(obj.absolute_url(), _("Retractions"))
filesize = pdf.get_size()
filesize = filesize / 1024 if filesize > 0 else 0
except:
# POSKeyError: 'No blob file'
# Show the record, but not the link
title = _('Retraction report unavailable')
anchor = title
items[i]['Retractions'] = title
items[i]['replace']['Retractions'] = anchor
# Create json
qcid = obj.aq_parent.id;
serviceref = "%s (%s)" % (items[i]['Service'], items[i]['Keyword'])
trows = self.anjson.get(serviceref, {});
anrows = trows.get(qcid, []);
anid = '%s.%s' % (items[i]['getReferenceAnalysesGroupID'],
items[i]['id'])
rr = obj.aq_parent.getResultsRangeDict()
uid = obj.getServiceUID()
if uid in rr:
specs = rr[uid];
try:
smin = float(specs.get('min', 0))
smax = float(specs.get('max', 0))
error = float(specs.get('error', 0))
target = float(specs.get('result', 0))
result = float(items[i]['Result'])
error_amount = ((target / 100) * error) if target > 0 else 0
upper = smax + error_amount
lower = smin - error_amount
anrow = { 'date': items[i]['CaptureDate'],
'min': smin,
'max': smax,
'target': target,
'error': error,
'erroramount': error_amount,
'upper': upper,
'lower': lower,
'result': result,
'unit': items[i]['Unit'],
'id': items[i]['uid'] }
anrows.append(anrow);
trows[qcid] = anrows;
self.anjson[serviceref] = trows
except:
pass
return items
def __init__(self, context, request):
AnalysesView.__init__(self, context, request)
self.icon = "++resource++bika.lims.images/worksheet_big.png"
self.title = "%s: %s" % (context.Title(), _("Add Analyses"))
self.description = _("")
def __init__(self, context, request, **kwargs):
AnalysesView.__init__(self, context, request)
self.title = _("Analyses pending")
self.show_select_all_checkbox = False
self.show_categories = False
self.pagesize = 50
# Get temp objects that are too time consuming to obtain every time
self.worksheet_catalog = getToolByName(
context, CATALOG_WORKSHEET_LISTING)
# Check if the filter bar functionality is activated or not
self.filter_bar_enabled =\
self.context.bika_setup.getDisplayAdvancedFilterBarForAnalyses()
# each editable item needs it's own allow_edit
# which is a list of field names.
self.allow_edit = True
self.columns['AnalysisRequest'] = {
'title': _('Analysis Request'),
'attr': 'getRequestID',
'replace_url': 'getRequestURL',
'sortable': False
}
self.columns['Worksheet'] = {
'title': _('Worksheet'),
'sortable': False
}
self.review_states = [
{'id': 'default',
'title': _('Results pending'),
'transitions': [{'id': 'sample'},
{'id': 'submit'},
{'id': 'cancel'},
# {'id': 'assign'}
],
'contentFilter': {'review_state': [
'sample_received', 'assigned', 'attachment_due'],
'cancellation_state': 'active', },
'columns': ['AnalysisRequest',
'Worksheet',
'Service',
'Result',
'Uncertainty',
'Partition',
'Method',
'Instrument',
'Analyst',
'state_title',
]
},
{'id': 'to_be_verified',
'title': _('To be verified'),
'transitions': [{'id': 'verify'},
{'id': 'cancel'}
],
'contentFilter': {
'review_state': ['to_be_verified'],
'cancellation_state': 'active', },
'columns': ['AnalysisRequest',
'Worksheet',
'Service',
'Result',
'Uncertainty',
'Partition',
'Method',
'Instrument',
'Analyst',
'state_title',
]
},
]
def folderitems(self):
self.analyst = self.context.getAnalyst().strip()
self.instrument = self.context.getInstrument()
self.contentsMethod = self.context.getFolderContents
items = AnalysesView.folderitems(self)
layout = self.context.getLayout()
highest_position = 0
for x, item in enumerate(items):
obj = item['obj']
pos = [int(slot['position']) for slot in layout if
slot['analysis_uid'] == obj.UID()][0]
highest_position = max(highest_position, pos)
items[x]['Pos'] = pos
items[x]['colspan'] = {'Pos':1}
service = obj.getService()
method = service.getMethod()
items[x]['Service'] = service.Title()
items[x]['Method'] = method and method.Title() or ''
items[x]['class']['Service'] = 'service_title'
items[x]['Category'] = service.getCategory().Title()
if obj.portal_type == "ReferenceAnalysis":
items[x]['DueDate'] = ''
else:
items[x]['DueDate'] = self.ulocalized_time(obj.getDueDate())
items[x]['Order'] = ''
# insert placeholder row items in the gaps
empties = []
used = [int(slot['position']) for slot in layout]
for pos in range(1, highest_position + 1):
if pos not in used:
empties.append(pos)
item = {}
item.update({
'obj': self.context,
'id': self.context.id,
'uid': self.context.UID(),
'title': self.context.Title(),
'type_class': 'blank-worksheet-row',
'url': self.context.absolute_url(),
'relative_url': self.context.absolute_url(),
'view_url': self.context.absolute_url(),
'path': "/".join(self.context.getPhysicalPath()),
'before': {},
'after': {},
'choices': {},
'class': {},
'state_class': 'state-empty',
'allow_edit': [],
'colspan': {'Pos':len(self.columns) + len(self.interim_fields)},
'rowspan': {'Pos':1},
'Pos': pos,
'Service': '',
'Attachments': '',
'state_title': 's'})
item['replace'] = {
'Pos': "<table width='100%' cellpadding='0' cellspacing='0'>" + \
"<tr><td class='pos'>%s</td>" % pos + \
"<td align='right'> </td></tr></table>",
'select_column': '',
}
items.append(item)
items = sorted(items, key = itemgetter('Service'))
items = sorted(items, key = itemgetter('Pos'))
slot_items = {} # pos:[item_nrs]
for x in range(len(items)):
p = items[x]['Pos']
if p in slot_items:
slot_items[p].append(x)
else:
slot_items[p] = [x, ]
actual_table_position = -1
# The first item in items[this position] gets a rowspan for it's
# "Position" column, which spans all other table rows in this position.
for pos, pos_items in slot_items.items():
actual_table_position += 1
x = pos_items[0]
if pos in empties:
continue
# set Pos column for this row, to have a rowspan
items[x]['rowspan'] = {'Pos': len(pos_items)}
# fill the rowspan with a little table
obj = items[x]['obj']
# parent is either an AR, a Worksheet, or a
# ReferenceSample (analysis parent).
parent = obj.aq_parent
if parent.aq_parent.portal_type == "WorksheetFolder":
# we're a duplicate; get original object's client
client = obj.getAnalysis().aq_parent.aq_parent
elif parent.aq_parent.portal_type == "ReferenceSupplier":
# we're a reference sample; get reference definition
client = obj.getReferenceDefinition()
else:
client = parent.aq_parent
pos_text = "<table class='worksheet-position' width='100%%' cellpadding='0' cellspacing='0' style='padding-bottom:5px;'><tr>" + \
"<td class='pos' rowspan='3'>%s</td>" % pos
pos_text += "<td class='pos_top'><a href='%s'>%s</a></td>" % \
(client.absolute_url(), client.Title())
pos_text += "<td class='pos_top_icons' rowspan='3'>"
if obj.portal_type == 'DuplicateAnalysis':
pos_text += "<img title='%s' src='%s/++resource++bika.lims.images/duplicate.png'/>" % (_("Duplicate"), self.context.absolute_url())
pos_text += "<br/>"
elif obj.portal_type == 'ReferenceAnalysis' and obj.ReferenceType == 'b':
pos_text += "<a href='%s'><img title='%s' src='++resource++bika.lims.images/blank.png'></a>" % (parent.absolute_url(), parent.Title())
pos_text += "<br/>"
elif obj.portal_type == 'ReferenceAnalysis' and obj.ReferenceType == 'c':
pos_text += "<a href='%s'><img title='%s' src='++resource++bika.lims.images/control.png'></a>" % (parent.absolute_url(), parent.Title())
pos_text += "<br/>"
if parent.portal_type == 'AnalysisRequest':
sample = parent.getSample()
pos_text += "<a href='%s'><img title='%s' src='++resource++bika.lims.images/sample.png'></a>" % (sample.absolute_url(), sample.Title())
pos_text += "</td></tr>"
pos_text += "<tr><td>"
if parent.portal_type == 'AnalysisRequest':
pos_text += "<a href='%s'>%s</a>" % (parent.absolute_url(), parent.Title())
elif parent.portal_type == 'ReferenceSample':
pos_text += "<a href='%s'>%s</a>" % (parent.absolute_url(), parent.Title())
elif parent.portal_type == 'Worksheet':
parent = obj.getAnalysis().aq_parent
pos_text += "<a href='%s'>(%s)</a>" % (parent.absolute_url(), parent.Title())
pos_text += "</td></tr>"
# sampletype
pos_text += "<tr><td>"
if obj.portal_type == 'Analysis':
pos_text += obj.aq_parent.getSample().getSampleType().Title()
elif obj.portal_type == 'ReferenceAnalysis':
pos_text += "" #obj.aq_parent.getReferenceDefinition().Title()
elif obj.portal_type == 'DuplicateAnalysis':
pos_text += obj.getAnalysis().aq_parent.getSample().getSampleType().Title()
pos_text += "</td></tr>"
# samplingdeviation
if obj.portal_type == 'Analysis':
deviation = obj.aq_parent.getSample().getSamplingDeviation()
if deviation:
pos_text += "<tr><td>"
pos_text += deviation.Title()
pos_text += "</td></tr>"
## # barcode
## barcode = parent.id.replace("-", "")
## if obj.portal_type == 'DuplicateAnalysis':
## barcode += "D"
## pos_text += "<tr><td class='barcode' colspan='3'><div id='barcode_%s'></div>" % barcode + \
## "<script type='text/javascript'>$('#barcode_%s').barcode('%s', 'code39', {'barHeight':15, addQuietZone:false, showHRI: false })</script>" % (barcode, barcode) + \
## "</td></tr>"
pos_text += "</table>"
items[x]['replace']['Pos'] = pos_text
for k,v in self.columns.items():
self.columns[k]['sortable'] = False
return items
def folderitems(self):
self.analyst = self.context.getAnalyst().strip()
self.instrument = self.context.getInstrument()
items = BaseView.folderitems(self)
layout = self.context.getLayout()
highest_position = 0
new_items = []
for x, item in enumerate(items):
obj = item['obj'].getObject()
pos = [
slot['position'] for slot in layout
if slot['analysis_uid'] == obj.UID()
][0]
# compensate for possible bad data (dbw#104)
if type(pos) in (list, tuple):
pos = pos[0]
if pos == 'new':
continue
pos = int(pos)
highest_position = max(highest_position, pos)
items[x]['Pos'] = pos
items[x]['colspan'] = {'Pos': 1}
method = obj.getMethod()
items[x]['Service'] = obj.Title()
#items[x]['Method'] = method and method.Title() or ''
items[x]['class']['Service'] = 'service_title'
items[x]['Category'] = obj.getCategoryTitle()
if obj.portal_type == "ReferenceAnalysis":
items[x]['DueDate'] = self.ulocalized_time(
obj.aq_parent.getExpiryDate(), long_format=0)
else:
items[x]['DueDate'] = self.ulocalized_time(obj.getDueDate())
items[x]['Order'] = ''
# instrument = obj.getInstrument()
#items[x]['Instrument'] = instrument and instrument.Title() or ''
new_items.append(item)
items = new_items
# insert placeholder row items in the gaps
# This is done badly to compensate for possible bad data (dbw#104)
empties = []
used = []
for slot in layout:
position = slot['position']
if type(position) in (list, tuple):
position = position[0]
if position == 'new':
continue
position = int(position)
used.append(position)
for pos in range(1, highest_position + 1):
if pos not in used:
empties.append(pos)
item = {}
item.update({
'obj': self.context,
'id': self.context.id,
'uid': self.context.UID(),
'title': self.context.Title(),
'type_class': 'blank-worksheet-row',
'url': self.context.absolute_url(),
'relative_url': self.context.absolute_url(),
'view_url': self.context.absolute_url(),
'path': "/".join(self.context.getPhysicalPath()),
'before': {},
'after': {},
'choices': {},
'class': {},
'state_class': 'state-empty',
'allow_edit': [],
'colspan': {
'Pos': len(self.columns) + len(self.interim_fields)
},
'rowspan': {
'Pos': 1
},
'Pos': pos,
'Service': '',
'Attachments': '',
'state_title': 's',
})
item['replace'] = {
'Pos': "<table width='100%' cellpadding='0' cellspacing='0'>" + \
"<tr><td class='pos'>%s</td>" % pos + \
"<td align='right'> </td></tr></table>",
'select_column': '',
}
items.append(item)
items = sorted(items, key=itemgetter('Service'))
try:
items = sorted(items, key=itemgetter('Pos'))
except:
pass
slot_items = {} # pos:[item_nrs]
for x in range(len(items)):
p = items[x]['Pos']
if p in slot_items:
slot_items[p].append(x)
else:
slot_items[p] = [
x,
]
actual_table_position = -1
# The first item in items[this position] gets a rowspan for it's
# "Position" column, which spans all other table rows in this position.
for pos, pos_items in slot_items.items():
actual_table_position += 1
x = pos_items[0]
if pos in empties:
continue
# set Pos column for this row, to have a rowspan
# Analysis Remarks only allowed for Analysis types
# Needs to look inside all slot analyses, cause some of them can
# have remarks entered and can have different analysis statuses
rowspan = len(pos_items)
remarksenabled = self.context.bika_setup.getEnableAnalysisRemarks()
for pos_subitem in pos_items:
subitem = items[pos_subitem]
isanalysis = subitem['obj'].portal_type == 'Analysis'
hasremarks = True if subitem.get('Remarks', '') else False
remarksedit = remarksenabled and 'Remarks' in subitem.get(
'allow_edit', [])
if isanalysis and (hasremarks or remarksedit):
rowspan += 1
items[x]['rowspan'] = {'Pos': rowspan}
# TODO-performance: getting the object here...
obj = items[x]['obj'].getObject()
# fill the rowspan with a little table
# parent is either an AR, a Worksheet, or a
# ReferenceSample (analysis parent).
parent = obj.aq_parent
if parent.aq_parent.portal_type == "WorksheetFolder":
# we're a duplicate; get original object's client
client = obj.getAnalysis().aq_parent.aq_parent
elif parent.aq_parent.portal_type == "Supplier":
# we're a reference sample; get reference definition
client = obj.getReferenceDefinition()
else:
client = parent.aq_parent
pos_text = "<table class='worksheet-position' width='100%%' cellpadding='0' cellspacing='0' style='padding-bottom:5px;'><tr>" + \
"<td class='pos' rowspan='3'>%s</td>" % pos
if obj.portal_type == 'ReferenceAnalysis':
pos_text += "<td class='pos_top'>%s</td>" % obj.getReferenceAnalysesGroupID(
)
elif obj.portal_type == 'DuplicateAnalysis' and \
obj.getAnalysis().portal_type == 'ReferenceAnalysis':
pos_text += "<td class='pos_top'><a href='%s'>%s</a></td>" % \
(obj.aq_parent.absolute_url(), obj.aq_parent.id)
elif client:
pos_text += "<td class='pos_top'><a href='%s'>%s</a></td>" % \
(client.absolute_url(), client.Title())
else:
pos_text += "<td class='pos_top'> </td>"
pos_text += "<td class='pos_top_icons' rowspan='3'>"
if obj.portal_type == 'DuplicateAnalysis':
pos_text += "<img title='%s' src='%s/++resource++bika.lims.images/duplicate.png'/>" % (
_("Duplicate").encode('utf-8'),
self.context.absolute_url())
pos_text += "<br/>"
elif obj.portal_type == 'ReferenceAnalysis' and obj.ReferenceType == 'b':
pos_text += "<a href='%s'><img title='%s' src='++resource++bika.lims.images/blank.png'></a>" % (
parent.absolute_url(), parent.Title())
pos_text += "<br/>"
elif obj.portal_type == 'ReferenceAnalysis' and obj.ReferenceType == 'c':
pos_text += "<a href='%s'><img title='%s' src='++resource++bika.lims.images/control.png'></a>" % (
parent.absolute_url(), parent.Title())
pos_text += "<br/>"
if parent.portal_type == 'AnalysisRequest':
sample = parent.getSample()
pos_text += "<a href='%s'><img title='%s' src='++resource++bika.lims.images/sample.png'></a>" % (
sample.absolute_url(), sample.Title())
pos_text += "</td></tr>"
pos_text += "<tr><td>"
if parent.portal_type == 'AnalysisRequest':
pos_text += "<a href='%s'>%s</a>" % (parent.absolute_url(),
parent.Title())
elif parent.portal_type == 'ReferenceSample':
pos_text += "<a href='%s'>%s</a>" % (parent.absolute_url(),
parent.Title())
elif obj.portal_type == 'DuplicateAnalysis':
pos_text += "<a style='white-space:nowrap' href='%s'>%s</a>" % (
obj.getAnalysis().aq_parent.absolute_url(),
obj.getReferenceAnalysesGroupID())
elif parent.portal_type == 'Worksheet':
parent = obj.getAnalysis().aq_parent
pos_text += "<a href='%s'>(%s)</a>" % (parent.absolute_url(),
parent.Title())
pos_text += "</td></tr>"
# sampletype
pos_text += "<tr><td>"
if obj.portal_type == 'Analysis':
pos_text += obj.aq_parent.getSample().getSampleType().Title()
elif obj.portal_type == 'ReferenceAnalysis' or \
(obj.portal_type == 'DuplicateAnalysis' and \
obj.getAnalysis().portal_type == 'ReferenceAnalysis'):
pos_text += "" #obj.aq_parent.getReferenceDefinition().Title()
elif obj.portal_type == 'DuplicateAnalysis':
pos_text += obj.getAnalysis().aq_parent.getSample(
).getSampleType().Title()
pos_text += "</td></tr>"
# samplingdeviation
if obj.portal_type == 'Analysis':
deviation = obj.aq_parent.getSample().getSamplingDeviation()
if deviation:
pos_text += "<tr><td> </td>"
pos_text += "<td colspan='2'>"
pos_text += deviation.Title()
pos_text += "</td></tr>"
## # barcode
## barcode = parent.id.replace("-", "")
## if obj.portal_type == 'DuplicateAnalysis':
## barcode += "D"
## pos_text += "<tr><td class='barcode' colspan='3'><div id='barcode_%s'></div>" % barcode + \
## "<script type='text/javascript'>$('#barcode_%s').barcode('%s', 'code128', {'barHeight':15, addQuietZone:false, showHRI: false })</script>" % (barcode, barcode) + \
## "</td></tr>"
pos_text += "</table>"
items[x]['replace']['Pos'] = pos_text
for k, v in self.columns.items():
self.columns[k]['sortable'] = False
return items
def folderitems(self):
self.analyst = self.context.getAnalyst().strip()
self.instrument = self.context.getInstrument()
self.contentsMethod = self.context.getFolderContents
items = BaseView.folderitems(self)
layout = self.context.getLayout()
highest_position = 0
new_items = []
for x, item in enumerate(items):
obj = item['obj']
pos = [slot['position'] for slot in layout if
slot['analysis_uid'] == obj.UID()][0]
# compensate for possible bad data (dbw#104)
if type(pos) in (list, tuple):
pos = pos[0]
if pos == 'new':
continue
pos = int(pos)
highest_position = max(highest_position, pos)
items[x]['Pos'] = pos
items[x]['colspan'] = {'Pos':1}
service = obj.getService()
method = service.getMethod()
items[x]['Service'] = service.Title()
items[x]['Priority'] = ''
#items[x]['Method'] = method and method.Title() or ''
items[x]['class']['Service'] = 'service_title'
items[x]['Category'] = service.getCategory() and service.getCategory().Title() or ''
if obj.portal_type == "ReferenceAnalysis":
items[x]['DueDate'] = self.ulocalized_time(obj.aq_parent.getExpiryDate(), long_format=0)
else:
items[x]['DueDate'] = self.ulocalized_time(obj.getDueDate())
items[x]['Order'] = ''
instrument = obj.getInstrument()
#items[x]['Instrument'] = instrument and instrument.Title() or ''
new_items.append(item)
items = new_items
# insert placeholder row items in the gaps
# This is done badly to compensate for possible bad data (dbw#104)
empties = []
used = []
for slot in layout:
position = slot['position']
if type(position) in (list, tuple):
position = position[0]
if position == 'new':
continue
position = int(position)
used.append(position)
for pos in range(1, highest_position + 1):
if pos not in used:
empties.append(pos)
item = {}
item.update({
'obj': self.context,
'id': self.context.id,
'uid': self.context.UID(),
'title': self.context.Title(),
'type_class': 'blank-worksheet-row',
'url': self.context.absolute_url(),
'relative_url': self.context.absolute_url(),
'view_url': self.context.absolute_url(),
'path': "/".join(self.context.getPhysicalPath()),
'before': {},
'after': {},
'choices': {},
'class': {},
'state_class': 'state-empty',
'allow_edit': [],
'colspan': {'Pos':len(self.columns) + len(self.interim_fields)},
'rowspan': {'Pos':1},
'Pos': pos,
'Service': '',
'Attachments': '',
'state_title': 's',})
item['replace'] = {
'Pos': "<table width='100%' cellpadding='0' cellspacing='0'>" + \
"<tr><td class='pos'>%s</td>" % pos + \
"<td align='right'> </td></tr></table>",
'select_column': '',
}
items.append(item)
items = sorted(items, key = itemgetter('Service'))
try:
items = sorted(items, key = itemgetter('Pos'))
except:
pass
slot_items = {} # pos:[item_nrs]
for x in range(len(items)):
p = items[x]['Pos']
if p in slot_items:
slot_items[p].append(x)
else:
slot_items[p] = [x, ]
actual_table_position = -1
# The first item in items[this position] gets a rowspan for it's
# "Position" column, which spans all other table rows in this position.
for pos, pos_items in slot_items.items():
actual_table_position += 1
x = pos_items[0]
if pos in empties:
continue
# set Pos column for this row, to have a rowspan
# Analysis Remarks only allowed for Analysis types
# Needs to look inside all slot analyses, cause some of them can
# have remarks entered and can have different analysis statuses
rowspan = len(pos_items)
remarksenabled = self.context.bika_setup.getEnableAnalysisRemarks()
for pos_subitem in pos_items:
subitem = items[pos_subitem]
isanalysis = subitem['obj'].portal_type == 'Analysis'
hasremarks = True if subitem.get('Remarks', '') else False
remarksedit = remarksenabled and 'Remarks' in subitem.get('allow_edit', [])
if isanalysis and (hasremarks or remarksedit):
rowspan += 1
items[x]['rowspan'] = {'Pos': rowspan}
obj = items[x]['obj']
# fill the rowspan with a little table
# parent is either an AR, a Worksheet, or a
# ReferenceSample (analysis parent).
parent = obj.aq_parent
if parent.aq_parent.portal_type == "WorksheetFolder":
# we're a duplicate; get original object's client
client = obj.getAnalysis().aq_parent.aq_parent
elif parent.aq_parent.portal_type == "Supplier":
# we're a reference sample; get reference definition
client = obj.getReferenceDefinition()
else:
client = parent.aq_parent
pos_text = "<table class='worksheet-position' width='100%%' cellpadding='0' cellspacing='0' style='padding-bottom:5px;'><tr>" + \
"<td class='pos' rowspan='3'>%s</td>" % pos
if obj.portal_type == 'ReferenceAnalysis':
pos_text += "<td class='pos_top'>%s</td>" % obj.getReferenceAnalysesGroupID()
elif obj.portal_type == 'DuplicateAnalysis' and \
obj.getAnalysis().portal_type == 'ReferenceAnalysis':
pos_text += "<td class='pos_top'><a href='%s'>%s</a></td>" % \
(obj.aq_parent.absolute_url(), obj.aq_parent.id)
elif client:
pos_text += "<td class='pos_top'><a href='%s'>%s</a></td>" % \
(client.absolute_url(), client.Title())
else:
pos_text += "<td class='pos_top'> </td>"
pos_text += "<td class='pos_top_icons' rowspan='3'>"
if obj.portal_type == 'DuplicateAnalysis':
pos_text += "<img title='%s' src='%s/++resource++bika.lims.images/duplicate.png'/>" % (_("Duplicate").encode('utf-8'), self.context.absolute_url())
pos_text += "<br/>"
elif obj.portal_type == 'ReferenceAnalysis' and obj.ReferenceType == 'b':
pos_text += "<a href='%s'><img title='%s' src='++resource++bika.lims.images/blank.png'></a>" % (parent.absolute_url(), parent.Title())
pos_text += "<br/>"
elif obj.portal_type == 'ReferenceAnalysis' and obj.ReferenceType == 'c':
pos_text += "<a href='%s'><img title='%s' src='++resource++bika.lims.images/control.png'></a>" % (parent.absolute_url(), parent.Title())
pos_text += "<br/>"
if parent.portal_type == 'AnalysisRequest':
sample = parent.getSample()
pos_text += "<a href='%s'><img title='%s' src='++resource++bika.lims.images/sample.png'></a>" % (sample.absolute_url(), sample.Title())
pos_text += "</td></tr>"
pos_text += "<tr><td>"
if parent.portal_type == 'AnalysisRequest':
pos_text += "<a href='%s'>%s</a>" % (parent.absolute_url(), parent.Title())
elif parent.portal_type == 'ReferenceSample':
pos_text += "<a href='%s'>%s</a>" % (parent.absolute_url(), parent.Title())
elif obj.portal_type == 'DuplicateAnalysis':
pos_text += "<a style='white-space:nowrap' href='%s'>%s</a>" % (obj.getAnalysis().aq_parent.absolute_url(), obj.getReferenceAnalysesGroupID())
elif parent.portal_type == 'Worksheet':
parent = obj.getAnalysis().aq_parent
pos_text += "<a href='%s'>(%s)</a>" % (parent.absolute_url(), parent.Title())
pos_text += "</td></tr>"
# sampletype
pos_text += "<tr><td>"
if obj.portal_type == 'Analysis':
pos_text += obj.aq_parent.getSample().getSampleType().Title()
elif obj.portal_type == 'ReferenceAnalysis' or \
(obj.portal_type == 'DuplicateAnalysis' and \
obj.getAnalysis().portal_type == 'ReferenceAnalysis'):
pos_text += "" #obj.aq_parent.getReferenceDefinition().Title()
elif obj.portal_type == 'DuplicateAnalysis':
pos_text += obj.getAnalysis().aq_parent.getSample().getSampleType().Title()
pos_text += "</td></tr>"
# samplingdeviation
if obj.portal_type == 'Analysis':
deviation = obj.aq_parent.getSample().getSamplingDeviation()
if deviation:
pos_text += "<tr><td> </td>"
pos_text += "<td colspan='2'>"
pos_text += deviation.Title()
pos_text += "</td></tr>"
## # barcode
## barcode = parent.id.replace("-", "")
## if obj.portal_type == 'DuplicateAnalysis':
## barcode += "D"
## pos_text += "<tr><td class='barcode' colspan='3'><div id='barcode_%s'></div>" % barcode + \
## "<script type='text/javascript'>$('#barcode_%s').barcode('%s', 'code128', {'barHeight':15, addQuietZone:false, showHRI: false })</script>" % (barcode, barcode) + \
## "</td></tr>"
pos_text += "</table>"
items[x]['replace']['Pos'] = pos_text
items[x]['getPriority'] = '' #Icon get added by adapter
for k,v in self.columns.items():
self.columns[k]['sortable'] = False
return items
def createAnalysesView(self, context, request, **kwargs):
return AnalysesView(context, request, **kwargs)
def folderitems(self):
items = AnalysesView.folderitems(self)
items = sorted(items, key = itemgetter('getReferenceAnalysesGroupID'))
items.reverse()
return items
