def Import(context, request):
"""
This function handles requests when user uploads a file and submits. Gets
requests parameters, and creates a Parser object. Then based on that
parser object, creates an Importer object and calls its importer.
"""
infile = request.form['tx1800i_file']
fileformat = request.form['format']
artoapply = request.form['artoapply']
override = request.form['override']
instrument = request.form.get('instrument', None)
errors = []
logs = []
warns = []
status_mapping = {
'received': ['sample_received'],
'received_tobeverified': ['sample_received', 'attachment_due', 'to_be_verified']
}
override_mapping = {
'nooverride': [False, False],
'override': [True, False],
'overrideempty': [True, True]
}
# Load the most suitable parser according to file extension/options/etc...
parser = None
if not hasattr(infile, 'filename'):
errors.append(_("No file selected"))
if fileformat == 'txt':
parser = TX1800iParser(infile)
else:
errors.append(t(_("Unrecognized file format ${fileformat}",
mapping={"fileformat": fileformat})))
if parser:
# Load the importer
status = status_mapping.get(artoapply, ['sample_received', 'attachment_due', 'to_be_verified'])
over = override_mapping.get(override, [False, False])
importer = SysmexXTImporter(parser=parser,
context=context,
allowed_ar_states=status,
allowed_analysis_states=None,
override=over,
instrument_uid=instrument)
tbex = ''
try:
importer.process()
except:
tbex = traceback.format_exc()
errors = importer.errors
logs = importer.logs
warns = importer.warns
if tbex:
errors.append(tbex)
results = {'errors': errors, 'log': logs, 'warns': warns}
return json.dumps(results)
def Import(context, request):
"""
This function handles requests when user uploads a file and submits. Gets
requests parameters, and creates a Parser object. Then based on that
parser object, creates an Importer object and calls its importer.
"""
infile = request.form['tx1800i_file']
fileformat = request.form['format']
artoapply = request.form['artoapply']
override = request.form['override']
sample = request.form.get('sample', 'requestid')
instrument = request.form.get('instrument', None)
errors = []
logs = []
warns = []
status_mapping = {
'received': ['sample_received'],
'received_tobeverified': ['sample_received', 'attachment_due', 'to_be_verified']
}
override_mapping = {
'nooverride': [False, False],
'override': [True, False],
'overrideempty': [True, True]
}
sample_mapping = {
'requestid': ['getId'],
'sampleid': ['getSampleID'],
'clientsid': ['getClientSampleID'],
'sample_clientsid': ['getSampleID', 'getClientSampleID']
}
# Load the most suitable parser according to file extension/options/etc...
parser = None
if not hasattr(infile, 'filename'):
errors.append(_("No file selected"))
if fileformat == 'txt':
parser = TX1800iParser(infile)
else:
errors.append(t(_("Unrecognized file format ${fileformat}",
mapping={"fileformat": fileformat})))
if parser:
# Load the importer
status = status_mapping.get(artoapply, ['sample_received', 'attachment_due', 'to_be_verified'])
over = override_mapping.get(override, [False, False])
sam = sample_mapping.get(sample, ['getId', 'getSampleID', 'getClientSampleID'])
importer = SysmexXTImporter(parser=parser,
context=context,
idsearchcriteria=sam,
allowed_ar_states=status,
allowed_analysis_states=None,
override=over,
instrument_uid=instrument)
tbex = ''
try:
importer.process()
except:
tbex = traceback.format_exc()
errors = importer.errors
logs = importer.logs
warns = importer.warns
if tbex:
errors.append(tbex)
results = {'errors': errors, 'log': logs, 'warns': warns}
return json.dumps(results)
def Import(context, request):
"""
This function handles requests when user uploads a file and submits. Gets
requests parameters, and creates a Parser object. Then based on that
parser object, creates an Importer object and calls its importer.
"""
infile = request.form['tx4000i_file']
fileformat = request.form['format']
artoapply = request.form['artoapply']
override = request.form['override']
sample = request.form.get('sample', 'requestid')
instrument = request.form.get('instrument', None)
errors = []
logs = []
warns = []
status_mapping = {
'received': ['sample_received'],
'received_tobeverified': ['sample_received', 'attachment_due', 'to_be_verified']
}
override_mapping = {
'nooverride': [False, False],
'override': [True, False],
'overrideempty': [True, True]
}
sample_mapping = {
'requestid': ['getId'],
'sampleid': ['getSampleID'],
'clientsid': ['getClientSampleID'],
'sample_clientsid': ['getSampleID', 'getClientSampleID']
}
# Load the most suitable parser according to file extension/options/etc...
parser = None
if not hasattr(infile, 'filename'):
errors.append(_("No file selected"))
if fileformat == 'txt':
# So far, both Instruments from Sysmex TX Series use the same format for result files.
# In both case 'ASTM' protocol is used with the same order of columns. So,
# we are going to use TXT Parser from 'TX1800i' Interface.
parser = TX1800iParser(infile)
else:
errors.append(t(_("Unrecognized file format ${fileformat}",
mapping={"fileformat": fileformat})))
if parser:
# Load the importer
status = status_mapping.get(artoapply, ['sample_received', 'attachment_due', 'to_be_verified'])
over = override_mapping.get(override, [False, False])
sam = sample_mapping.get(sample, ['getId', 'getSampleID', 'getClientSampleID'])
importer = SysmexXTImporter(parser=parser,
context=context,
idsearchcriteria=sam,
allowed_ar_states=status,
allowed_analysis_states=None,
override=over,
instrument_uid=instrument)
tbex = ''
try:
importer.process()
except:
tbex = traceback.format_exc()
errors = importer.errors
logs = importer.logs
warns = importer.warns
if tbex:
errors.append(tbex)
results = {'errors': errors, 'log': logs, 'warns': warns}
return json.dumps(results)