Python ekb_from_agent示例

示例#1

文件： mra_test.py 项目： kkaris/bioagents

def test_respond_model_get_upstream():
    mm = MRA_Module(testing=True)
    egfr = sts.Agent('EGFR', db_refs={'HGNC': '3236', 'TEXT': 'EGFR'})
    kras = sts.Agent('KRAS', db_refs={'HGNC': '6407', 'TEXT': 'KRAS'})
    stmts = [sts.Activation(egfr, kras)]
    model_id = mm.mra.new_model(stmts)
    kras_term = ekb_from_agent(kras)
    msg = KQMLList('MODEL-GET-UPSTREAM')
    msg.sets('target', kras_term)
    msg.set('model-id', str(model_id))
    reply = mm.respond_model_get_upstream(msg)
    ups = reply.get('upstream')
    assert(len(ups) == 1)

示例#2

文件： mra_test.py 项目： pvtodorov/bioagents

def test_agent_to_ekb():
    egfr = Agent('EGFR', db_refs={'HGNC': '3236', 'TEXT': 'EGFR'})
    term = ekb_from_agent(egfr)
    egfr_out = get_target(term)
    assert (isinstance(egfr_out, Agent))
    assert (egfr_out.name == 'EGFR')