def test_get_deps(): r = Recipes( """ one: meta.yaml: | package: name: one version: 0.1 two: meta.yaml: | package: name: two version: 0.1 requirements: build: - one three: meta.yaml: | package: name: three version: 0.1 requirements: build: - one run: - two """, from_string=True) r.write_recipes() assert list(utils.get_deps(r.recipe_dirs['two'])) == ['one'] assert list(utils.get_deps(r.recipe_dirs['three'], build=True)) == ['one'] assert list(utils.get_deps(r.recipe_dirs['three'], build=False)) == ['two']
""" Returns the Bioconductor name (rather than the sanitized lowercase bioconda name) that can be provided to bioconda-scraper.py """ return MetaData(recipe).meta['source']['fn'].split('_')[0] if __name__ == "__main__": import argparse ap = argparse.ArgumentParser() ap.add_argument('--repository', default='recipes', help='Recipes directory') args = ap.parse_args() recipes = list(utils.get_recipes(args.repository, 'bioconductor-*')) deps = itertools.chain( itertools.chain(*(utils.get_deps(i, build=True) for i in recipes)), itertools.chain(*(utils.get_deps(i, build=False) for i in recipes)) ) deps = list(filter(lambda x: x.startswith(('r-', 'bioconductor-')), deps)) bioconda_deps = list( filter( lambda x: os.path.isdir(x), itertools.chain(*(utils.get_recipes(args.repository, i) for i in deps)) ) ) dag, name2recipe = utils.get_dag(bioconda_deps) def version_sort(x):
Returns the Bioconductor name (rather than the sanitized lowercase bioconda name) that can be provided to bioconda-scraper.py """ return MetaData(recipe).meta['source']['fn'].split('_')[0] if __name__ == "__main__": import argparse ap = argparse.ArgumentParser() ap.add_argument('--recipes', default='recipes', help='Recipes directory') ap.add_argument('--config', default='recipes', help='Config YAML') args = ap.parse_args() recipes = list(utils.get_recipes(args.recipes, 'bioconductor-*')) deps = itertools.chain( itertools.chain(*(utils.get_deps(i, build=True, config=args.config) for i in recipes)), itertools.chain(*(utils.get_deps(i, build=False, config=args.config) for i in recipes))) deps = list(filter(lambda x: x.startswith(('r-', 'bioconductor-')), deps)) bioconda_deps = list( filter( lambda x: os.path.isdir(x), itertools.chain(*(utils.get_recipes(args.recipes, i) for i in deps)))) dag, name2recipe = utils.get_dag(bioconda_deps, config=args.config) def version_sort(x):
name) that can be provided to bioconda-scraper.py """ return MetaData(recipe).meta['source']['fn'].split('_')[0] if __name__ == "__main__": import argparse ap = argparse.ArgumentParser() ap.add_argument('--repository', default='recipes', help='Recipes directory') args = ap.parse_args() recipes = list(utils.get_recipes(args.repository, 'bioconductor-*')) deps = itertools.chain( itertools.chain(*(utils.get_deps(i, build=True) for i in recipes)), itertools.chain(*(utils.get_deps(i, build=False) for i in recipes))) deps = list(filter(lambda x: x.startswith(('r-', 'bioconductor-')), deps)) bioconda_deps = list( filter( lambda x: os.path.isdir(x), itertools.chain(*(utils.get_recipes(args.repository, i) for i in deps)))) dag, name2recipe = utils.get_dag(bioconda_deps) def version_sort(x): return version.VersionOrder(MetaData(x).meta['package']['version'])