Python bioconvert_script示例

示例#1

 def _method_python_external(self, *args, **kwargs):
     pycmd = "python {}".format(bioconvert_script("fastqToFasta.py"))
     cmd = "{} {} {}".format(pycmd, self.infile, self.outfile)
     self.execute(cmd)

示例#2

 def _method_perl(self, *args, **kwargs):
     perlcmd = "perl {}".format(bioconvert_script("fastqToFasta.pl"))
     cmd = "{} {} {}".format(perlcmd, self.infile, self.outfile)
     self.execute(cmd)