def get(self, id):
"""
Returns phenotypes associated with disease
"""
return search_associations('disease', 'phenotype', None, id,
**core_parser.parse_args())
def get(self, subject_category='gene', object_category='gene'):
"""
Returns list of associations
"""
args = parser.parse_args()
return search_associations(subject_category, object_category, **args)
def get(self, id):
"""
Returns homologs for a gene
"""
rel = 'RO:0002434' # TODO
return search_associations('gene', 'gene', rel, id,
**core_parser.parse_args())
def get(self, id):
"""
TODO Returns expression events for a gene
"""
return search_associations('gene', 'anatomy', None, id,
**core_parser.parse_args())
def get(self, id):
"""
Returns genes associated with a variant
"""
# TODO: invert
return search_associations('variant', 'gene', None, id,
**core_parser.parse_args())
def get(self, id):
"""
Returns phenotypes associated with a genotype
"""
# TODO: invert
return search_associations('genotype', 'phenotypes', None, id,
**core_parser.parse_args())
def get(self, id):
"""
TODO Returns models associated with a disease
"""
# TODO: invert
return search_associations('model', 'disease', None, id,
**core_parser.parse_args())
def get(self, id):
"""
Returns phenotypes associated with gene
"""
args = core_parser.parse_args()
print(args)
return search_associations('gene', 'phenotype', None, id,
**core_parser.parse_args())
def get(self, id):
"""
Returns genes associated with a disease
"""
args = core_parser.parse_args()
print(args)
return search_associations('disease', 'gene', None, id,
**core_parser.parse_args())
def get(self, id):
"""
TODO Returns expression events for a gene
"""
# TODO: we don't store this directly
# could be retrieved by getting all associations and then extracting pubs
return search_associations('gene', 'publication', None, id,
**core_parser.parse_args())
def get(self, id):
"""
Returns interactions for a gene
"""
return search_associations('gene', 'gene', 'RO:0002434', id,
**core_parser.parse_args())