def removeAll(self, force=False):
'''
Remove all bank releases and database records
:param force: force removal even if some production dirs are freezed
:type force: bool
:return: bool
'''
if not force:
has_freeze = False
for prod in self.bank['production']:
if 'freeze' in prod and prod['freeze']:
has_freeze = True
break
if has_freeze:
logging.error('Cannot remove bank, some production directories are freezed, use force if needed')
return False
self.banks.remove({'name': self.name})
BmajIndex.delete_all_bank(self.name)
bank_data_dir = self.get_data_dir()
logging.warn('DELETE ' + bank_data_dir)
if os.path.exists(bank_data_dir):
shutil.rmtree(bank_data_dir)
bank_offline_dir = os.path.join(self.config.get('data.dir'), self.config.get('offline.dir.name'))
if os.path.exists(bank_offline_dir):
shutil.rmtree(bank_offline_dir)
bank_log_dir = os.path.join(self.config.get('log.dir'), self.name)
if os.path.exists(bank_log_dir) and self.no_log:
shutil.rmtree(bank_log_dir)
return True
def tearDown(self):
data_dir = self.config.get('data.dir')
lock_file = os.path.join(data_dir, 'local.lock')
if os.path.exists(lock_file):
os.remove(lock_file)
self.utils.clean()
BmajIndex.delete_all_bank('test')
def tearDown(self):
data_dir = self.config.get('data.dir')
lock_file = os.path.join(data_dir,'local.lock')
if os.path.exists(lock_file):
os.remove(lock_file)
self.utils.clean()
BmajIndex.delete_all_bank('test')
def removeAll(self, force=False):
'''
Remove all bank releases and database records
:param force: force removal even if some production dirs are freezed
:type force: bool
:return: bool
'''
if not force:
has_freeze = False
for prod in self.bank['production']:
if 'freeze' in prod and prod['freeze']:
has_freeze = True
break
if has_freeze:
logging.error(
'Cannot remove bank, some production directories are freezed, use force if needed'
)
return False
self.banks.remove({'name': self.name})
BmajIndex.delete_all_bank(self.name)
bank_data_dir = self.get_data_dir()
logging.warn('DELETE ' + bank_data_dir)
if os.path.exists(bank_data_dir):
shutil.rmtree(bank_data_dir)
bank_offline_dir = os.path.join(self.config.get('data.dir'),
self.config.get('offline.dir.name'))
if os.path.exists(bank_offline_dir):
shutil.rmtree(bank_offline_dir)
bank_log_dir = os.path.join(self.config.get('log.dir'), self.name)
if os.path.exists(bank_log_dir) and self.no_log:
shutil.rmtree(bank_log_dir)
return True
def test_remove_all(self):
self.test_index()
query = {
'query' : {
'match' : {'bank': 'test'}
}
}
BmajIndex.delete_all_bank('test')
res = BmajIndex.search(query)
self.assertTrue(len(res)==0)
def setUp(self):
BmajIndex.es = None
self.utils = UtilsForTest()
curdir = os.path.dirname(os.path.realpath(__file__))
BiomajConfig.load_config(self.utils.global_properties, allow_user_config=False)
if BmajIndex.do_index == False:
self.skipTest("Skipping indexing tests due to elasticsearch not available")
# Delete all banks
b = Bank('local')
b.banks.remove({})
BmajIndex.delete_all_bank('local')
self.config = BiomajConfig('local')
data_dir = self.config.get('data.dir')
lock_file = os.path.join(data_dir,'local.lock')
if os.path.exists(lock_file):
os.remove(lock_file)
def setUp(self):
BmajIndex.es = None
self.utils = UtilsForTest()
curdir = os.path.dirname(os.path.realpath(__file__))
BiomajConfig.load_config(self.utils.global_properties,
allow_user_config=False)
if BmajIndex.do_index == False:
self.skipTest(
"Skipping indexing tests due to elasticsearch not available")
# Delete all banks
b = Bank('local')
b.banks.remove({})
BmajIndex.delete_all_bank('local')
self.config = BiomajConfig('local')
data_dir = self.config.get('data.dir')
lock_file = os.path.join(data_dir, 'local.lock')
if os.path.exists(lock_file):
os.remove(lock_file)
def test_remove_all(self):
self.test_index()
query = {'query': {'match': {'bank': 'test'}}}
BmajIndex.delete_all_bank('test')
res = BmajIndex.search(query)
self.assertTrue(len(res) == 0)
