Python PandasPDB.get示例

示例#1

文件： test_read_pdb.py 项目： smopart/biopandas

def test_get_df():
    ppdb = PandasPDB()
    ppdb.read_pdb(TESTDATA_FILENAME)

    shape = ppdb.get('c-alpha').shape
    assert shape == (174, 21), shape

    shape = ppdb.get('hydrogen', invert=True).shape
    assert shape == (1330, 21), shape

    shape = ppdb.get('hydrogen').shape
    assert shape == (0, 21), shape

    shape = ppdb.get('main chain').shape
    assert shape == (696, 21), shape

示例#2

文件： test_read_pdb.py 项目： BenJamesbabala/biopandas

def test_get_df():
    ppdb = PandasPDB()
    ppdb.read_pdb(TESTDATA_FILENAME)

    shape = ppdb.get('c-alpha').shape
    assert shape == (174, 21), shape

    shape = ppdb.get('hydrogen', invert=True).shape
    assert shape == (1330, 21), shape

    shape = ppdb.get('hydrogen').shape
    assert shape == (0, 21), shape

    shape = ppdb.get('main chain').shape
    assert shape == (696, 21), shape

示例#3

文件： test_read_pdb.py 项目： smopart/biopandas

def test_get_all():
    ppdb = PandasPDB()
    ppdb.read_pdb(TESTDATA_FILENAME)
    for i in ['c-alpha', 'hydrogen', 'main chain']:
        ppdb.get(i)

示例#4

文件： test_read_pdb.py 项目： smopart/biopandas

def test_get_exceptions():
    ppdb = PandasPDB()
    ppdb.read_pdb(TESTDATA_FILENAME)
    ppdb.get('main-chai')

示例#5

文件： test_read_pdb.py 项目： rasbt/biopandas

def test_get_all():
    ppdb = PandasPDB()
    ppdb.read_pdb(TESTDATA_FILENAME)
    for i in ['c-alpha', 'hydrogen', 'main chain']:
        ppdb.get(i)

示例#6

文件： test_read_pdb.py 项目： rasbt/biopandas

def test_get_exceptions():
    ppdb = PandasPDB()
    ppdb.read_pdb(TESTDATA_FILENAME)
    ppdb.get('main-chai')