def choose_lab_post(self, *args, **kw):
u = kw.get('lab_choice', None)
configp = ConfigParser.RawConfigParser()
configp.read(path_conf_labs())
list_labs = (configp.get('LABS:main', 'keys')).split(',')
if u is not None and u in list_labs:
session['current_lab'] = u
session['first_passage'] = False
session.save()
principal = session["principal_tequila"]
tmp_user, tmp_lab = self.build_user(principal)
raise redirect('/login')
elif u is not None and u not in list_labs:
flash("Your lab is not registered into BioRepo, please contact the administrator", "error")
raise redirect('/login/out')
else:
print "--------------- Problem in choose_lab() --------"
flash('Something strange happen, contact your administrator', 'error')
raise redirect('/login/out')
def choose_lab_post(self, *args, **kw):
u = kw.get('lab_choice', None)
configp = ConfigParser.RawConfigParser()
configp.read(path_conf_labs())
list_labs = (configp.get('LABS:main', 'keys')).split(',')
if u is not None and u in list_labs:
session['current_lab'] = u
session['first_passage'] = False
session.save()
principal = session["principal_tequila"]
tmp_user, tmp_lab = self.build_user(principal)
raise redirect('/login')
elif u is not None and u not in list_labs:
flash(
"Your lab is not registered into BioRepo, please contact the administrator",
"error")
raise redirect('/login/out')
else:
print "--------------- Problem in choose_lab() --------"
flash('Something strange happen, contact your administrator',
'error')
raise redirect('/login/out')
def build_user(self, principal):
'''
Build an User and his/her Lab(s) from a principal hash from Tequila
@param principal: the hash from Tequila
@return: an User, his/her Lab(s)
'''
hash = dict(item.split('=') for item in principal.split('\n') if len(item.split('=')) > 1)
user = User()
lab = Labs()
#initialize the configparser
configp = ConfigParser.RawConfigParser()
print "################# NEW CONNEXION ###############"
print hash, "--- connexion"
now2 = datetime.datetime.now()
print "############## TIME #############"
print now2.ctime()
if(hash.has_key('firstname')):
user.firstname = hash.get('firstname').decode("utf-8")
if(hash.has_key('name')):
user.name = hash.get('name').decode("utf-8")
if(hash.has_key('email')):
user.email = hash.get('email')
#testing unit
tmp_u = hash['allunits'].lower()
list_units = tmp_u.split(',')
print list_units, "list_units"
#possibility to add one or several external lab(s) to a collaborator without Shibboleth agreement
test_user = DBSession.query(User).filter(User._email == user.email).first()
#if it is not the first connexion for the user
if test_user is not None:
#get his/her lab(s) registered
test_labs = test_user.labs
#check if we get a Shibboleth bypass for this one
if len(test_labs) > 0:
for l in test_labs:
if str(l.name) not in list_units:
print "Shibboleth bypass for : " + str(l.name)
list_units.append(str(l.name))
#parsing conf file labs.ini
configp.read(path_conf_labs())
list_labs = (configp.get('LABS:main', 'keys')).split(',')
print list_labs, "list_labs in labs.ini"
valid = False
# try:
# test = session['current_lab']
# exist = True
# except:
# exist = False
if len(list_units) > 1 and session['first_passage'] == True:
cpt_labs = len(list_units)
cpt = 0
for u in list_units:
if u in list_labs:
raise redirect('choose_lab', {'list_units': list_units})
else:
cpt += 1
pass
if cpt == cpt_labs:
flash("Sorry, your lab is not registered in BioRepo, please contact the administrator", 'error')
raise redirect('/')
elif len(list_units) > 1 and session['first_passage'] == False:
valid = True
u = session["current_lab"]
lab.name = u
lab.path_raw = path_raw(u)
lab.path_processed = path_processed(u)
lab.path_tmp = path_tmp(u)
session["tmp_user"] = user
session["tmp_lab"] = lab
session.save()
#the user is affiliated to one lab
elif len(list_units) < 2 and list_units != ['unsupported']:
for u in list_units:
if u in list_labs:
#creating the Labs keys
valid = True
lab.name = u
lab.path_raw = path_raw(u)
lab.path_processed = path_processed(u)
lab.path_tmp = path_tmp(u)
session['current_lab'] = u
session.save()
else:
flash("Sorry, your lab is not registered in BioRepo, please contact the administrator to do it", 'error')
raise redirect('/')
#the user is an external collaborator, not from EPFL
elif len(list_units) == 1 and list_units == ['unsupported']:
print "---- OUTSIDE USER DETECTED ----"
valid = True
mail = user.email
user_tocheck = DBSession.query(User).filter(User._email == mail).first()
if user_tocheck is None or len(user_tocheck.labs) == 0 or len(user_tocheck.labs) > 2:
valid = False
#ext_users have only one lab
else:
for l in user_tocheck.labs:
lab_name = str(l.name)
lab.name = lab_name
lab.path_raw = path_raw(lab_name)
lab.path_processed = path_processed(lab_name)
lab.path_tmp = path_tmp(lab_name)
session['current_lab'] = lab_name
session.save()
#IMPORTANT : where you have to put your name if you are a super admin
if valid == True or hash['user'] == 'mouscaz' or hash['user'] == 'fdavid':
return user, lab
else:
flash("Sorry, your lab is not registered in BioRepo", 'error')
raise redirect('/')
def build_user(self, principal):
'''
Build an User and his/her Lab(s) from a principal hash from Tequila
@param principal: the hash from Tequila
@return: an User, his/her Lab(s)
'''
hash = dict(
item.split('=') for item in principal.split('\n')
if len(item.split('=')) > 1)
user = User()
lab = Labs()
#initialize the configparser
configp = ConfigParser.RawConfigParser()
print "################# NEW CONNEXION ###############"
print hash, "--- connexion"
now2 = datetime.datetime.now()
print "############## TIME #############"
print now2.ctime()
if (hash.has_key('firstname')):
user.firstname = hash.get('firstname').decode("utf-8")
if (hash.has_key('name')):
user.name = hash.get('name').decode("utf-8")
if (hash.has_key('email')):
user.email = hash.get('email')
#testing unit
tmp_u = hash['allunits'].lower()
list_units = tmp_u.split(',')
print list_units, "list_units"
#possibility to add one or several external lab(s) to a collaborator without Shibboleth agreement
test_user = DBSession.query(User).filter(
User._email == user.email).first()
#if it is not the first connexion for the user
if test_user is not None:
#get his/her lab(s) registered
test_labs = test_user.labs
#check if we get a Shibboleth bypass for this one
if len(test_labs) > 0:
for l in test_labs:
if str(l.name) not in list_units:
print "Shibboleth bypass for : " + str(l.name)
list_units.append(str(l.name))
#parsing conf file labs.ini
configp.read(path_conf_labs())
list_labs = (configp.get('LABS:main', 'keys')).split(',')
print list_labs, "list_labs in labs.ini"
valid = False
# try:
# test = session['current_lab']
# exist = True
# except:
# exist = False
if len(list_units) > 1 and session['first_passage'] == True:
cpt_labs = len(list_units)
cpt = 0
for u in list_units:
if u in list_labs:
raise redirect('choose_lab', {'list_units': list_units})
else:
cpt += 1
pass
if cpt == cpt_labs:
flash(
"Sorry, your lab is not registered in BioRepo, please contact the administrator",
'error')
raise redirect('/')
elif len(list_units) > 1 and session['first_passage'] == False:
valid = True
u = session["current_lab"]
lab.name = u
lab.path_raw = path_raw(u)
lab.path_processed = path_processed(u)
lab.path_tmp = path_tmp(u)
session["tmp_user"] = user
session["tmp_lab"] = lab
session.save()
#the user is affiliated to one lab
elif len(list_units) < 2 and list_units != ['unsupported']:
for u in list_units:
if u in list_labs:
#creating the Labs keys
valid = True
lab.name = u
lab.path_raw = path_raw(u)
lab.path_processed = path_processed(u)
lab.path_tmp = path_tmp(u)
session['current_lab'] = u
session.save()
else:
flash(
"Sorry, your lab is not registered in BioRepo, please contact the administrator to do it",
'error')
raise redirect('/')
#the user is an external collaborator, not from EPFL
elif len(list_units) == 1 and list_units == ['unsupported']:
print "---- OUTSIDE USER DETECTED ----"
valid = True
mail = user.email
user_tocheck = DBSession.query(User).filter(
User._email == mail).first()
if user_tocheck is None or len(
user_tocheck.labs) == 0 or len(user_tocheck.labs) > 2:
valid = False
#ext_users have only one lab
else:
for l in user_tocheck.labs:
lab_name = str(l.name)
lab.name = lab_name
lab.path_raw = path_raw(lab_name)
lab.path_processed = path_processed(lab_name)
lab.path_tmp = path_tmp(lab_name)
session['current_lab'] = lab_name
session.save()
#IMPORTANT : where you have to put your name if you are a super admin
if valid == True or hash['user'] == 'mouscaz' or hash[
'user'] == 'fdavid':
return user, lab
else:
flash("Sorry, your lab is not registered in BioRepo", 'error')
raise redirect('/')
