def setUp(self):
args = []
opts = {'dumpfile': 'test_db_dump.xml', 'verbosity': 0}
cmd = 'migrate_db'
call_command(cmd, *args, **opts)
blast_type = 'local'
voucher_code = 'CP100-10'
gene_code = 'COI'
self.blast = BLAST(blast_type, voucher_code, gene_code)
self.seq_file = ''
def test_create_blast_db_unmasked(self):
blast_type = 'local'
voucher_code = 'CP100-10'
gene_code = 'COI'
blast = BLAST(blast_type, voucher_code, gene_code, mask=False)
blast.save_seqs_to_file()
blast.create_blast_db()
files = glob.glob(
os.path.join(settings.BASE_DIR, '..', 'blast_local', 'db',
'COI_seqs.fas.n*'))
self.assertTrue(len(files) > 0)
self.remove_blast_data_files()
