'sec_id': 0,
'sec_x': 0.9
},
dtypes=[np.float, np.int32, np.float])
##########################################################################
############################### GAPJUNC ##################################
gap_list = []
if i2i_gap:
conn = net.add_gap_junctions(source={'pop_name': ['Bask']},
target={'pop_name': ['Bask']},
resistance=0.0001,
target_sections=['somatic'],
connection_rule=syn_percent,
connection_params={
'p': 0.08,
'track_list': gap_list
})
conn._edge_type_properties['sec_id'] = 0
conn._edge_type_properties['sec_x'] = 0.9
##########################################################################
############################### INT2INT ##################################
####################### Coupled Unidirectional Pair ######################
##########################################################################
############################### INT2INT ##################################
####################### Coupled Bidirectional Pair #######################
# conn.add_properties(names=['delay', 'sec_id', 'sec_x'],
# rule=syn_dist_delay_section,
# rule_params={'min_delay':syn[dynamics_file]['delay'],
# 'sec_id':0, 'sec_x':0.9},
# dtypes=[np.float, np.int32, np.float])
# else:
# conn.add_properties(names=['delay'], rule=syn_delay,
# rule_params={'min_delay':syn[dynamics_file]['delay']}, dtypes=[np.float])
add_delays.append(False)
min_delays.append(-1)#Want to append -1 if not adding delays.
net.add_gap_junctions(source={'pop_name': ['Bask']},
target={'pop_name': ['Bask']},
resistance = 0.0001, target_sections=['somatic'],
connection_rule=dist_conn_perc,
connection_params={'min_dist':0.0,
'max_dist':300.0,'min_syns':1,
'max_syns':2,'A':0.08,'B':0.0})
conn._edge_type_properties['sec_id'] = 0
conn._edge_type_properties['sec_x'] = 0.9
net.add_edges(source=thalamus.nodes(), target=net.nodes(pop_name='PyrA'),
connection_rule=one_to_one,
syn_weight=7.0e-03,
weight_function='lognormal',
weight_sigma=2.0e-03,
target_sections=['basal'],
delay=0.1,
distance_range=[0.0, 300.0],
dynamics_params='AMPA_ExcToExc.json',
