def test_get_search_expressions_slice_by_feature_name_h5(test_client):
"""
get_search_expressions
"""
context = test_client[3]
with context:
# feature name list (200)
result, code = operations.get_search_expressions(
featureNameList=['TSPAN6', 'TNMD'], format='h5')
assert len(result) == 1
assert code == 200
def test_get_search_expressions_filter_project(test_client):
"""
get_search_expressions
"""
sample_project, sample_study, sample_expression, context = test_client
with context:
# search by projectID
result, code = operations.get_search_expressions(
projectID=sample_project['id'])
assert result[0]['id'] == uuid.UUID(sample_expression['id'])
assert code == 200
def test_get_search_expressions_slice_by_threshold_loom(test_client):
"""
get_search_expressions
"""
context = test_client[3]
with context:
# minExpression (200)
threshold_query = [{"featureName": "TSPAN6", "threshold": 0.1}, {"featureName": "TNMD", "threshold": 0.2}]
result, code = operations.get_search_expressions(
minExpression=json.dumps(threshold_query).split(","), format='loom')
assert len(result) == 1
assert result[0]['fileType'] == 'loom'
assert code == 200
# maxExpression (200)
threshold_query = [{"featureName": "TSPAN6", "threshold": 1.0}, {"featureName": "TNMD", "threshold": 2.0}]
result, code = operations.get_search_expressions(
maxExpression=json.dumps(threshold_query).split(","), format='loom')
assert len(result) == 1
assert result[0]['fileType'] == 'loom'
assert code == 200
def test_get_search_expressions_slice_by_feature_sample_loom(test_client):
"""
get_search_expressions
"""
context = test_client[3]
with context:
# feature name list (200)
result, code = operations.get_search_expressions(
featureNameList=['TSPAN6', 'TNMD'], sampleIDList=['DO221123'], format='loom')
assert len(result) == 1
assert result[0]['fileType'] == 'loom'
assert code == 200
def test_get_search_expressions_slice_by_feature_id_json(test_client):
"""
get_search_expressions
"""
context = test_client[3]
with context:
# feature ID list (200)
result, code = operations.get_search_expressions(
featureIDList=['ENSG00000000003', 'ENSG00000000005'], format='json')
assert len(result) == 1
assert result[0]['fileType'] == 'json'
assert code == 200
tmp_id = result[0]['id']
tmp_response = tmp_download(str(tmp_id))
assert tmp_response.status_code == 200