def test_post_search_expressions_name_threshold(test_client):
"""
post_search_expressions
"""
_, _, sample_expression, context = test_client
with context:
# min Expression feature ID h5 format
result, code = operations.post_search_expressions({
'version': Version,
'tags': ['test'],
'minExpression': [{'featureID': 'ENSG00000000003', 'threshold': 0.1},
{'featureID': 'ENSG00000000005', 'threshold': 0.2}]
})
assert len(result) == 1
assert result[0]['fileType'] == 'h5'
assert code == 200
# min Expression feature no threshold match
result, code = operations.post_search_expressions({
'version': Version,
'tags': ['test'],
'minExpression': [{'featureID': 'ENSG00000000003', 'threshold': 1000},
{'featureID': 'ENSG00000000005', 'threshold': 1000}]
})
assert not result
assert code == 200
def test_post_search_expressions_error_threshold(test_client):
"""
post_search_expressions
"""
_, _, sample_expression, context = test_client
with context:
# threshold error
result, code = operations.post_search_expressions({
'format':
'json',
'minExpression': [{
'featureName': 'TSPAN6',
'threshold': 0.1
}, {
'featureID': 'ENSG00000000005',
'threshold': 0.2
}]
})
assert (code == 400)
# threshold error
result, code = operations.post_search_expressions({
'format':
'json',
'minExpression': [{
'invalid': 'TSPAN6'
}, {
'invalid': 'ENSG00000000005',
'threshold': 2.0
}]
})
assert (code == 400)
def test_post_search_expressions_error_uuid(test_client):
"""
post_search_expressions
"""
_, _, sample_expression, context = test_client
with context:
# uuid error (400)
result, code = operations.post_search_expressions({
'studyID': 'not a uuid',
})
assert len(result) == 0
assert code == 200
def test_post_search_expressions_id_threshold(test_client):
"""
post_search_expressions
"""
_, _, sample_expression, context = test_client
with context:
# max Expression feature name json format
result, code = operations.post_search_expressions({
'format': 'json',
'minExpression': [{'featureName': 'TSPAN6', 'threshold': 0.1},
{'featureName': 'TNMD', 'threshold': 0.2}]
})
assert len(result) == 1
assert result[0]['fileType'] == 'json'
assert code == 200