def test_all(timer=False):
for file in generate_paths():
from iotbx.detectors.pilatus_minicbf import PilatusImage
if timer: print os.path.basename(file)
P = PilatusImage(file)
if timer: G = Profiler("cbflib no-opt read")
P.read(algorithm="cbflib")
read1 = P.linearintdata
if timer: G = Profiler("cbflib optimized read")
P.linearintdata = None #won't read again without resetting first
P.read(algorithm="cbflib_optimized")
read2 = P.linearintdata
if timer: G = Profiler("buffer-based read")
P.linearintdata = None #won't read again without resetting first
P.read(algorithm="buffer_based")
read3 = P.linearintdata
if timer: del G
expected_image_size = {"Pilatus-6M":(2527,2463),
"Pilatus-2M":(1679,1475),
"Pilatus-300K":(619,487)}[P.vendortype]
assert read1.accessor().focus() == read2.accessor().focus() == expected_image_size
from cbflib_adaptbx import assert_equal
#print "Equality of arrays from two decompress methods", assert_equal(read1,read2), "\n"
assert assert_equal(read1,read2)
assert assert_equal(read1,read3)
def test_all(dirpath, timer=False):
for file in generate_paths(dirpath):
from iotbx.detectors.pilatus_minicbf import PilatusImage
if timer: print(os.path.basename(file))
P = PilatusImage(file)
if timer: G = Profiler("cbflib no-opt read")
P.read(algorithm="cbflib")
read1 = P.linearintdata
if timer: G = Profiler("cbflib optimized read")
P.linearintdata = None #won't read again without resetting first
P.read(algorithm="cbflib_optimized")
read2 = P.linearintdata
if timer: G = Profiler("buffer-based read")
P.linearintdata = None #won't read again without resetting first
P.read(algorithm="buffer_based")
read3 = P.linearintdata
if timer: del G
expected_image_size = {
"Pilatus-6M": (2527, 2463),
"Pilatus-2M": (1679, 1475),
"Pilatus-300K": (619, 487)
}[P.vendortype]
assert read1.accessor().focus() == read2.accessor().focus(
) == expected_image_size
from cbflib_adaptbx import assert_equal
#print "Equality of arrays from two decompress methods", assert_equal(read1,read2), "\n"
assert assert_equal(read1, read2)
assert assert_equal(read1, read3)
def run(file_name):
from libtbx.test_utils import approx_equal
py_image_obj = pyCBFImage(file_name)
py_image_obj.read()
c_image_obj = CBFImage(file_name)
c_image_obj.read()
assert_equal(py_image_obj.linearintdata, c_image_obj.linearintdata)
assert py_image_obj.size1 == c_image_obj.size1
assert py_image_obj.size2 == c_image_obj.size2
assert approx_equal(py_image_obj.saturation, c_image_obj.saturation)
assert approx_equal(py_image_obj.pixel_size, c_image_obj.pixel_size)
assert approx_equal(py_image_obj.osc_start, c_image_obj.osc_start)
assert approx_equal(py_image_obj.deltaphi, c_image_obj.deltaphi)
assert approx_equal(py_image_obj.wavelength, c_image_obj.wavelength)
assert approx_equal(py_image_obj.distance, c_image_obj.distance)
assert approx_equal(py_image_obj.beamx, c_image_obj.beamx)
assert approx_equal(py_image_obj.beamy, c_image_obj.beamy)
def run(file_name): from libtbx.test_utils import approx_equal py_image_obj = pyCBFImage(file_name) py_image_obj.read() c_image_obj = CBFImage(file_name) c_image_obj.read() assert_equal(py_image_obj.linearintdata, c_image_obj.linearintdata) assert py_image_obj.size1 == c_image_obj.size1 assert py_image_obj.size2 == c_image_obj.size2 assert approx_equal(py_image_obj.saturation, c_image_obj.saturation) assert approx_equal(py_image_obj.pixel_size, c_image_obj.pixel_size) assert approx_equal(py_image_obj.osc_start, c_image_obj.osc_start) assert approx_equal(py_image_obj.deltaphi, c_image_obj.deltaphi) assert approx_equal(py_image_obj.wavelength, c_image_obj.wavelength) assert approx_equal(py_image_obj.distance, c_image_obj.distance) assert approx_equal(py_image_obj.beamx, c_image_obj.beamx) assert approx_equal(py_image_obj.beamy, c_image_obj.beamy)
def basic_tests(verbose=True):
initial_intdata = create_random_data_with_gaussian_distribution(0.0,100.0)
#special deltas to test the compression algorithm
addresses = [3,6,9,12,15,18]
deltas = [-127,128,-32767,32768,-2147483647,2147483647]
for x in xrange(6):
initial_intdata[addresses[x]-1]=0
initial_intdata[addresses[x]]=deltas[x]
if verbose: P=Profiler("compress")
array_shape = initial_intdata.focus()
if verbose: print array_shape
compressed = compress(initial_intdata)
if verbose: print len(compressed)
if verbose: P=Profiler("uncompress")
decompressed_dat = uncompress(packed=compressed, fast=array_shape[1], slow=array_shape[0])
if verbose: del P
assert assert_equal(initial_intdata, decompressed_dat)
def basic_tests(verbose=True):
initial_intdata = create_random_data_with_gaussian_distribution(0.0, 100.0)
#special deltas to test the compression algorithm
addresses = [3, 6, 9, 12, 15, 18]
deltas = [-127, 128, -32767, 32768, -2147483647, 2147483647]
for x in range(6):
initial_intdata[addresses[x] - 1] = 0
initial_intdata[addresses[x]] = deltas[x]
if verbose: P = Profiler("compress")
array_shape = initial_intdata.focus()
if verbose: print(array_shape)
compressed = compress(initial_intdata)
if verbose: print(len(compressed))
if verbose: P = Profiler("uncompress")
decompressed_dat = uncompress(packed=compressed,
fast=array_shape[1],
slow=array_shape[0])
if verbose: del P
assert assert_equal(initial_intdata, decompressed_dat)