def importFullStarProjects(starFileName, projectName, inputDir='.', outputDir='.', guiRoot=None, allowPopups=0,minimalPrompts=1,verbose=1):
'''Returns a full CCPN project rooted in inputDir/projectName that will be created and saved.
Input will be from inputDir/starFileName
Returns False for error.
'''
if not os.path.exists(inputDir):
nTerror("Failed to find inputDir: %s" % inputDir)
return False
starFileNameFull = os.path.join(inputDir, starFileName)
if not os.path.exists(starFileNameFull):
nTerror("Failed to find starFileNameFull: %s" % starFileNameFull)
return False
if not os.path.exists(outputDir):
os.mkdir(outputDir)
os.chdir(outputDir)
ccpnProjectPath = os.path.join(outputDir, projectName)
if os.path.exists(ccpnProjectPath):
shutil.rmtree(ccpnProjectPath)
ccpnProject = Implementation.MemopsRoot(name=projectName)
# 'linkAtoms': (True,False,'If set to False (off), unrecognized coordinate atoms will not be linked.'),
keywds = {'minimalPrompts': minimalPrompts, 'allowPopups': allowPopups, 'linkAtoms':0}
formatNmrStarFormat = NmrStarFormat(ccpnProject, guiRoot, verbose=verbose, **keywds)
formatNmrStarFormat.version = '3.1'
entryTitle = 'Project from NMR-STAR for %s' % projectName
entryDetails = "Created by Wim Vranken's FormatConverter embedded in CING"
formatNmrStarFormat.getFullProject( starFileNameFull, title = entryTitle, details = entryDetails, **keywds)
# nmrConstraintStore = shiftList.nmrConstraintStore
# structureGeneration = nmrConstraintStore.findFirstStructureGeneration()
# formatNmrStarFormat.linkResonances(
# forceDefaultChainMapping=1, # may be overwritten by using forceChainMappings.
# globalStereoAssign=1,
# setSingleProchiral=1,
# setSinglePossEquiv=1,
## strucGen=structureGeneration,
# allowPopups=allowPopups, minimalPrompts=minimalPrompts, verbose=verbose, **keywds)
# Catch entries like mentioned in issue
try:
ccpnProject.checkAllValid()
except ApiError:
nTtracebackError()
nTerror("Failed ccpnProject.checkAllValid")
nTerror("See issue: %s%d" % (issueListUrl, 266))
return False
ccpnProject.saveModified()
if not os.path.exists(ccpnProjectPath):
nTerror("Failed to find new CCPN project directory: %s" % ccpnProjectPath)
return False
tgzFileName = projectName + ".tgz"
cmd = "tar -czf %s %s" % (tgzFileName, projectName)
do_cmd(cmd)
return ccpnProject
def importFullStarProjects(starFileName,
projectName,
inputDir='.',
outputDir='.',
guiRoot=None,
allowPopups=0,
minimalPrompts=1,
verbose=1):
'''Returns a full CCPN project rooted in inputDir/projectName that will be created and saved.
Input will be from inputDir/starFileName
Returns False for error.
'''
if not os.path.exists(inputDir):
nTerror("Failed to find inputDir: %s" % inputDir)
return False
starFileNameFull = os.path.join(inputDir, starFileName)
if not os.path.exists(starFileNameFull):
nTerror("Failed to find starFileNameFull: %s" % starFileNameFull)
return False
if not os.path.exists(outputDir):
os.mkdir(outputDir)
os.chdir(outputDir)
ccpnProjectPath = os.path.join(outputDir, projectName)
if os.path.exists(ccpnProjectPath):
shutil.rmtree(ccpnProjectPath)
ccpnProject = Implementation.MemopsRoot(name=projectName)
# 'linkAtoms': (True,False,'If set to False (off), unrecognized coordinate atoms will not be linked.'),
keywds = {
'minimalPrompts': minimalPrompts,
'allowPopups': allowPopups,
'linkAtoms': 0
}
formatNmrStarFormat = NmrStarFormat(ccpnProject,
guiRoot,
verbose=verbose,
**keywds)
formatNmrStarFormat.version = '3.1'
entryTitle = 'Project from NMR-STAR for %s' % projectName
entryDetails = "Created by Wim Vranken's FormatConverter embedded in CING"
formatNmrStarFormat.getFullProject(starFileNameFull,
title=entryTitle,
details=entryDetails,
**keywds)
# nmrConstraintStore = shiftList.nmrConstraintStore
# structureGeneration = nmrConstraintStore.findFirstStructureGeneration()
# formatNmrStarFormat.linkResonances(
# forceDefaultChainMapping=1, # may be overwritten by using forceChainMappings.
# globalStereoAssign=1,
# setSingleProchiral=1,
# setSinglePossEquiv=1,
## strucGen=structureGeneration,
# allowPopups=allowPopups, minimalPrompts=minimalPrompts, verbose=verbose, **keywds)
# Catch entries like mentioned in issue
try:
ccpnProject.checkAllValid()
except ApiError:
nTtracebackError()
nTerror("Failed ccpnProject.checkAllValid")
nTerror("See issue: %s%d" % (issueListUrl, 266))
return False
ccpnProject.saveModified()
if not os.path.exists(ccpnProjectPath):
nTerror("Failed to find new CCPN project directory: %s" %
ccpnProjectPath)
return False
tgzFileName = projectName + ".tgz"
cmd = "tar -czf %s %s" % (tgzFileName, projectName)
do_cmd(cmd)
return ccpnProject
