class ChannelCore(LoggerObject):
NAME = None
_rank = None
_is_virtual = False
def __init__(self,
strChannelId,
# either number of zsclice or projection type
oZSliceOrProjection=1,
channelRegistration=None,
registration_start=None,
new_image_size=None,
strImageOutCompression="80",
strPathOutDebug=None,
lstFeatureCategories=None,
dctFeatureParameters=None,
lstFeatureNames=None,
bFlatfieldCorrection=False,
strBackgroundImagePath="",
fBackgroundCorrection="",
fNormalizeMin="",
fNormalizeMax="",
fNormalizeRatio="",
fNormalizeOffset="",
check_for_plugins=True):
super(ChannelCore, self).__init__()
# remove all the hungarian bullshit as soon as possible!
self.strChannelId = strChannelId
# either number of zsclice or projection type
self.oZSliceOrProjection = oZSliceOrProjection
self.channelRegistration = channelRegistration
self.registration_start = registration_start
self.new_image_size = new_image_size
self.strImageOutCompression = strImageOutCompression
self.strPathOutDebug = strPathOutDebug
self.lstFeatureCategories = lstFeatureCategories
self.dctFeatureParameters = dctFeatureParameters
self.lstFeatureNames = lstFeatureNames
self.bFlatfieldCorrection = bFlatfieldCorrection
self.strBackgroundImagePath = strBackgroundImagePath
self.fBackgroundCorrection = fBackgroundCorrection
self.fNormalizeMin = fNormalizeMin
self.fNormalizeMax = fNormalizeMax
self.fNormalizeRatio = fNormalizeRatio
self.fNormalizeOffset = fNormalizeOffset
self._zslices = []
self.containers = {}
self._regions = {}
self.meta_image = None
self._features_calculated = False
try:
self.plugin_mgr = MetaPluginManager()[self.NAME.lower()]
if self.plugin_mgr.number_loaded_plugins() < 1:
if check_for_plugins:
raise RuntimeError(
("You need to load at least one segmentation"
" plugin for channel '%s'" %self.NAME))
except KeyError:
self.plugin_mgr = None
def __cmp__(self, channel):
return cmp(self._rank, channel._rank)
@classmethod
def is_virtual(cls):
return cls._is_virtual
def region_names(self):
return self._regions.keys()
def get_region(self, name):
return self._regions[name]
def has_region(self, name):
return self._regions.has_key(name)
def get_container(self, name):
return self.containers[name]
def append_zslice(self, meta_image):
self._zslices.append(meta_image)
def clear(self):
self._zslices = []
self._regions = {}
self.meta_image = None
self.containers = {}
class ChannelCore(LoggerObject):
NAME = None
_rank = None
_is_virtual = False
def __init__(
self,
strChannelId,
# either number of zsclice or projection type
oZSliceOrProjection=1,
channelRegistration=None,
registration_start=None,
new_image_size=None,
strImageOutCompression="80",
strPathOutDebug=None,
feature_groups=None,
lstFeatureNames=None,
bFlatfieldCorrection=False,
strBackgroundImagePath="",
fBackgroundCorrection="",
fNormalizeMin="",
fNormalizeMax="",
fNormalizeRatio="",
fNormalizeOffset="",
check_for_plugins=True):
super(ChannelCore, self).__init__()
# remove all the hungarian bullshit as soon as possible!
self.strChannelId = strChannelId
# either number of zsclice or projection type
self.oZSliceOrProjection = oZSliceOrProjection
self.channelRegistration = channelRegistration
self.registration_start = registration_start
self.new_image_size = new_image_size
self.strImageOutCompression = strImageOutCompression
self.strPathOutDebug = strPathOutDebug
self.feature_groups = feature_groups
self.lstFeatureNames = lstFeatureNames
self.bFlatfieldCorrection = bFlatfieldCorrection
self.strBackgroundImagePath = strBackgroundImagePath
self.fBackgroundCorrection = fBackgroundCorrection
self.fNormalizeMin = fNormalizeMin
self.fNormalizeMax = fNormalizeMax
self.fNormalizeRatio = fNormalizeRatio
self.fNormalizeOffset = fNormalizeOffset
self._zslices = []
self.containers = {}
self._regions = {}
self.meta_image = None
self._features_calculated = False
try:
self.plugin_mgr = MetaPluginManager()[self.NAME.lower()]
if self.plugin_mgr.number_loaded_plugins() < 1:
if check_for_plugins:
raise RuntimeError(
("You need to load at least one segmentation"
" plugin for channel '%s'" % self.NAME))
except KeyError:
self.plugin_mgr = None
def __cmp__(self, channel):
return cmp(self._rank, channel._rank)
@classmethod
def is_virtual(cls):
return cls._is_virtual
def region_names(self):
return self._regions.keys()
def get_region(self, name):
return self._regions[name]
def has_region(self, name):
return self._regions.has_key(name)
def get_container(self, name):
return self.containers[name]
def append_zslice(self, meta_image):
self._zslices.append(meta_image)
def clear(self):
self._zslices = []
self._regions = {}
self.meta_image = None
self.containers = {}
